Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Forward (+)

15146819 .. 15147430

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0178100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTGAAGCTTTCGATCCAAACCTTACCTTACAACTGTGTTGAATTGTTTGTTATGAGTTACTACGGATTGCCATTTGTTAATCCAAACAGCATTTTAGTTGTCACCAATATTGAAATTGGGGTAATTATAGAGCTCATATATCCTGGCATATTCTTATATCATGATTCAGCAAAAGAACGAAAGAGAATTGCTACATACTTTGTATGTAAACTTGTTTTCTTTTGGGTTGTTGTGGCTAGAACTATGTTGGCAATACCCGAGCATAAGATGAAGATGAATCGACATTTGAAGGCTGTCGTAGTTGGTTTTGTCAGTAATTTTTTTAGTGTCCTTATGTACAGCTCTTCTCTGTTCATCGTGAGTGACATTAAAACAAAGAGTGTGAAATATATGCCATTATGGCTCTCAGTTGCTAACTTTCTGAATGGTTGTTGCTGGACTTCCTATGCTCTTCTTGGAAAAGTGGACTACTCTGTTAGCAATGGTCTCGATGCAATTGTTGGAGCAGTTCAATTGATAGTCTATGCAATATATTACAGTACTTCACCAAACGATGAAGACCCTTATAACAAACCTACTAATGAAGTGCAACTTTCAACCATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

203

Amino Acids

23.03

Weight (kDa)

8.57

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	101 - 181	2.8e-14	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AclWI	GGATC	1 cut(s)	10
AfaI	GTAC	2 cut(s)	341, 544
AgsI	TTSAA	6 cut(s)	7, 44, 116, 292, 515, 600
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	10, 136, 345
AluI	AGCT	3 cut(s)	10, 136, 345
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	97, 540
AvaI	CYCGRG	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	403
BmcAI	AGTACT	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	603
BspCNI	CTCAG	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	163
BspPI	GGATC	1 cut(s)	10
BspQI	GCTCTTC	2 cut(s)	352, 459
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	490
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	38, 542
Bst6I	CTCTTC	2 cut(s)	352, 459
BstAUI	TGTACA	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	1 cut(s)	603
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	603
CciI	TCATGA	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	340, 543
CviAII	CATG	2 cut(s)	164, 604
CviJI	RGCY	6 cut(s)	10, 136, 239, 296, 345, 406
CviKI_1	RGCY	6 cut(s)	10, 136, 239, 296, 345, 406
CviQI	GTAC	2 cut(s)	340, 543
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	352, 459
EarI	CTCTTC	2 cut(s)	352, 459
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	2 cut(s)	167, 607
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	2 cut(s)	163, 603
FriOI	GRGCYC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	240
Hin1II	CATG	2 cut(s)	167, 607
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	167, 280
HphI	GGTGA	2 cut(s)	97, 540
Hpy166II	GTNNAC	2 cut(s)	212, 469
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	3 cut(s)	164, 361, 491
Hpy8I	GTNNAC	2 cut(s)	212, 469
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	2 cut(s)	38, 542
HpyCH4V	TGCA	3 cut(s)	497, 530, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	1 cut(s)	409
Hsp92II	CATG	2 cut(s)	167, 607
Kzo9I	GATC	1 cut(s)	15
LguI	GCTCTTC	2 cut(s)	352, 459
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	3 cut(s)	132, 159, 424
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	59, 103, 365
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	4 cut(s)	286, 339, 446, 572
MfeI	CAATTG	2 cut(s)	498, 515
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	7 cut(s)	44, 117, 126, 189, 319, 498, 515
MmeI	TCCRAC	1 cut(s)	484
MseI	TTAA	2 cut(s)	81, 372
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	2 cut(s)	498, 515
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	2 cut(s)	167, 607
NmuCI	GTSAC	2 cut(s)	103, 365
PagI	TCATGA	1 cut(s)	163
PciSI	GCTCTTC	2 cut(s)	352, 459
PfeI	GAWTC	2 cut(s)	167, 280
PsiI	TTATAA	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	341, 544
RsaNI	GTAC	2 cut(s)	340, 543
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	2 cut(s)	352, 459
SaqAI	TTAA	2 cut(s)	81, 372
Sau3AI	GATC	1 cut(s)	15
ScaI	AGTACT	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	6 cut(s)	12, 26, 31, 138, 347, 580
SfaNI	GCATC	1 cut(s)	484
Sse9I	AATT	7 cut(s)	44, 117, 126, 189, 319, 498, 515
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	2 cut(s)	38, 542
TaqI	TCGA	3 cut(s)	14, 283, 492
TasI	AATT	7 cut(s)	44, 117, 126, 189, 319, 498, 515
TatI	WGTACW	2 cut(s)	339, 542
TfiI	GAWTC	2 cut(s)	167, 280
Tru1I	TTAA	2 cut(s)	81, 372
Tru9I	TTAA	2 cut(s)	81, 372
TseFI	GTSAC	2 cut(s)	103, 365
Tsp45I	GTSAC	2 cut(s)	103, 365
TspDTI	ATGAA	5 cut(s)	287, 293, 346, 573, 600
TspGWI	ACGGA	1 cut(s)	81
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.