pycom03g01260

Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
992173 .. 993336
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01260.1

Sequence Viewer

Length: 1164 bp
ATGGGAGCTGGGGGGAACATGGTTACCAAAACCAAGTCTAAAAAGCTAAAAACCACCCACCAAAAAAGGGTGCCAGTCTCAAAACCTCCATTCACTCTAAGCCAAATCAAGAAAGCTATCCCTCCCCACTGCTTCAACCGCTCTCTCCTCCGCTCCTTCTCCTATCTCCTCTACGACCTCGCCTTATCCTTCCTCTTCTACCACATCGCCACCTCATACTTCCACCTCCTCCCTCTCCCCCTCCTCTCCTACATCTCCTGGCCTCTCTATTGGATCCTCCAAGGCTGCACACTCACCGGCGTGTGGGTTATCGCACACGAGTGCGGCCACCACGCCTTCAGTGACTACCAAGTAGTTGATGACATTGTCGGCTTTACCCTTCACTCATTTCTCCTAGTCCCTTACTTCCCGTGGAAATACAGCCACCGCCGCCACCACTCCAACACGGCGTCCCTCGAACGGGACGAAGTATTTGTTCCAAAACCTAAATCCAAAATTCCGTTTTACAGCAAGCACTTCAACAACCCTCCAGGCAGGCTCTTGAGTATTTTGGTAACACTCACACTCGGTTGGCCTTTGTACTTGGCCTTCAACGTCTCTGGCCGGGAATACGACCGGTTTGCGTGCCACTACGATCCCAAAAGTCCAATATTTTCGACCCGCGAAAGTCTTCAAATTTACATTTCTGACCTTGCGATTGTGGCCGTAACTTATGTGCTCTACCGCATTGCAATGGCCAAAGGGTTTGTTTGGCTTACTTGTATTTATGGAGTCCCATTGGTTGTAGTTAACGGGTTTCTTGTGTTGATCACGTACTTGCAGCACACACACTCCTCGCTGCCGCATTACGGCTCGTCGGAATGGGACTGGTTGCGAGGGGCTTTGTCGACGGTGGACAGAGACTTTGGGGTGCTTAATAAGGTTTTCCACAATATCACAGATTCGCATGTGGTTCACCATCTTTTCTCTACAATGCCACATTACCATGCAGTGGAGGCAACAGAAGCAGTGAAGCCTTTCTTGGGAGAGTACTATAGTTTCGATGGGACTCCGGTTTACAAGGCCTTGTGGAGGGAGGCTAAAGAGTGCCTTTATGTTGAGCCGGATGATGAGGATAATGGTGGAGCTAAAAACGGTGTTTTTTGGTACAAGAACAAGTTTTAA

Protein Analysis

388

Amino Acids

44.54

Weight (kDa)

8.97

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 14 - 64 1.6e-07 Domain of unknown function (DUF3474)
FA_desaturase PF00487 86 - 345 9.8e-31 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 991
AccBSI CCGCTC 2 cut(s) 141, 153
AccI GTMKAC 1 cut(s) 887
AccII CGCG 1 cut(s) 663
AciI CCGC 8 cut(s) 139, 151, 324, 427, 430, 661, 724, 842
AclWI GGATC 3 cut(s) 268, 281, 629
AcoI YGGCCR 4 cut(s) 325, 601, 702, 735
AcsI RAATTY 2 cut(s) 495, 675
AcuI CTGAAG 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 4 cut(s) 581, 815, 1031, 1148
AfiI CCNNNNNNNGG 8 cut(s) 67, 303, 459, 460, 848, 991, 1022, 1071
AgeI ACCGGT 1 cut(s) 615
AgsI TTSAA 4 cut(s) 136, 520, 592, 674
AjnI CCWGG 2 cut(s) 257, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AleI CACNNNNGTG 2 cut(s) 299, 319
AluBI AGCT 4 cut(s) 8, 46, 116, 1127
AluI AGCT 4 cut(s) 8, 46, 116, 1127
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 3 cut(s) 82, 601, 894
AlwI GGATC 3 cut(s) 268, 281, 629
AoxI GGCC 8 cut(s) 260, 325, 572, 585, 601, 702, 735, 1062
ApeKI GCWGC 3 cut(s) 285, 820, 838
ApoI RAATTY 2 cut(s) 495, 675
ArsI GACNNNNNNTTYG 4 cut(s) 455, 487, 887, 919
AsiGI ACCGGT 1 cut(s) 615
Asp700I GAANNNNTTC 2 cut(s) 669, 1016
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 286, 947
BalI TGGCCA 1 cut(s) 737
BamHI GGATCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 572, 604
BauI CACGAG 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 3 cut(s) 272, 825, 832
BccI CCATC 2 cut(s) 966, 1037
BceAI ACGGC 3 cut(s) 462, 689, 865
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 2 cut(s) 259, 531
BclI TGATCA 1 cut(s) 807
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 3 cut(s) 82, 601, 894
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 1033
BisI GCNGC 6 cut(s) 286, 325, 430, 821, 839, 842
BlsI GCNGC 6 cut(s) 287, 326, 431, 822, 840, 843
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 3 cut(s) 259, 531, 605
BmiI GGNNCC 2 cut(s) 72, 275
BmrFI CCNGG 3 cut(s) 259, 531, 605
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 562
BpuMI CCSGG 1 cut(s) 605
BsaAI YACGTR 1 cut(s) 813
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 280, 410
BsaWI WCCGGW 2 cut(s) 615, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 8 cut(s) 67, 303, 459, 460, 848, 991, 1022, 1071
Bse118I RCCGGY 2 cut(s) 296, 615
Bse1I ACTGG 2 cut(s) 74, 872
Bse3DI GCAATG 2 cut(s) 726, 738
BseBI CCWGG 2 cut(s) 259, 531
BseDI CCNNGG 2 cut(s) 280, 410
BseGI GGATG 1 cut(s) 1111
BseLI CCNNNNNNNGG 8 cut(s) 67, 303, 459, 460, 848, 991, 1022, 1071
BseMI GCAATG 2 cut(s) 726, 738
BseNI ACTGG 2 cut(s) 74, 872
BseRI GAGGAG 5 cut(s) 137, 158, 218, 233, 823
BseXI GCAGC 3 cut(s) 272, 825, 832
BseYI CCCAGC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 663
Bsh1285I CGRYCG 1 cut(s) 616
BshFI GGCC 8 cut(s) 262, 327, 574, 587, 603, 704, 737, 1064
BshNI GGYRCC 1 cut(s) 70
BshTI ACCGGT 1 cut(s) 615
BsiEI CGRYCG 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 5 cut(s) 297, 604, 616, 1052, 1103
BslFI GGGAC 6 cut(s) 383, 436, 476, 758, 878, 1060
BslI CCNNNNNNNGG 8 cut(s) 67, 303, 459, 460, 848, 991, 1022, 1071
BsmAI GTCTC 3 cut(s) 82, 601, 894
BsmBI CGTCTC 1 cut(s) 601
BsmFI GGGAC 6 cut(s) 383, 436, 476, 758, 878, 1060
BsnI GGCC 8 cut(s) 262, 327, 574, 587, 603, 704, 737, 1064
Bsp1286I GDGCHC 1 cut(s) 720
Bsp143I GATC 3 cut(s) 273, 634, 807
BspACI CCGC 8 cut(s) 139, 151, 324, 427, 430, 661, 724, 842
BspANI GGCC 8 cut(s) 262, 327, 574, 587, 603, 704, 737, 1064
BspFNI CGCG 1 cut(s) 663
BspLI GGNNCC 2 cut(s) 72, 275
BspPI GGATC 3 cut(s) 268, 281, 629
BspT107I GGYRCC 1 cut(s) 70
BsrBI CCGCTC 2 cut(s) 141, 153
BsrDI GCAATG 2 cut(s) 726, 738
BsrFI RCCGGY 2 cut(s) 296, 615
BsrI ACTGG 2 cut(s) 74, 872
BssAI RCCGGY 2 cut(s) 296, 615
BssECI CCNNGG 2 cut(s) 280, 410
BssMI GATC 3 cut(s) 273, 634, 807
BssNI GRCGYC 1 cut(s) 449
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 259, 531
Bst4CI ACNGT 2 cut(s) 892, 1136
Bst6I CTCTTC 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 813
BstC8I GCNNGC 3 cut(s) 512, 536, 625
BstDEI CTNAG 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 410
BstEII GGTNACC 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 1069
BstF5I GGATG 1 cut(s) 1111
BstFNI CGCG 1 cut(s) 663
BstKTI GATC 3 cut(s) 276, 637, 810
BstMAI GTCTC 3 cut(s) 82, 601, 894
BstMBI GATC 3 cut(s) 273, 634, 807
BstMCI CGRYCG 1 cut(s) 616
BstMWI GCNNNNNNNGC 5 cut(s) 138, 429, 701, 995, 1004
BstNI CCWGG 2 cut(s) 259, 531
BstNSI RCATGY 1 cut(s) 950
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 3 cut(s) 257, 529, 603
BstSFI CTRYAG 1 cut(s) 1033
BstUI CGCG 1 cut(s) 663
BstV1I GCAGC 3 cut(s) 272, 825, 832
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 8 cut(s) 262, 327, 574, 587, 603, 704, 737, 1064
BtgI CCRYGG 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 1111
BtsI GCAGTG 3 cut(s) 127, 996, 1014
BtsIMutI CAGTG 4 cut(s) 127, 346, 996, 1014
Cac8I GCNNGC 3 cut(s) 512, 536, 625
Cfr10I RCCGGY 2 cut(s) 296, 615
CseI GACGC 1 cut(s) 438
Csp6I GTAC 4 cut(s) 580, 814, 1030, 1147
CspAI ACCGGT 1 cut(s) 615
CviAII CATG 3 cut(s) 19, 947, 986
CviQI GTAC 4 cut(s) 580, 814, 1030, 1147
DdeI CTNAG 1 cut(s) 98
DpnI GATC 3 cut(s) 275, 636, 809
DpnII GATC 3 cut(s) 273, 634, 807
EaeI YGGCCR 4 cut(s) 325, 601, 702, 735
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 1064
Eco57I CTGAAG 1 cut(s) 322
Eco91I GGTNACC 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 1069
EcoO65I GGTNACC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 257, 529
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 3 cut(s) 22, 950, 989
FaiI YATR 8 cut(s) 20, 217, 714, 768, 948, 987, 1035, 1095
FalI AAGNNNNNCTT 4 cut(s) 1004, 1036, 1074, 1106
FaqI GGGAC 6 cut(s) 383, 436, 476, 758, 878, 1060
FatI CATG 3 cut(s) 18, 946, 985
FauI CCCGC 1 cut(s) 668
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 1 cut(s) 887
Fnu4HI GCNGC 6 cut(s) 286, 325, 430, 821, 839, 842
FokI GGATG 1 cut(s) 1118
Fsp4HI GCNGC 6 cut(s) 286, 325, 430, 821, 839, 842
FspBI CTAG 1 cut(s) 395
GluI GCNGC 6 cut(s) 286, 325, 430, 821, 839, 842
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 8 cut(s) 262, 327, 574, 587, 603, 704, 737, 1064
HapII CCGG 5 cut(s) 297, 604, 616, 1052, 1103
HgaI GACGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 3 cut(s) 22, 950, 989
HincII GTYRAC 2 cut(s) 790, 888
HindII GTYRAC 2 cut(s) 790, 888
HinfI GANTC 3 cut(s) 771, 941, 1048
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 5 cut(s) 297, 604, 616, 1052, 1103
HphI GGTGA 2 cut(s) 286, 947
Hpy166II GTNNAC 5 cut(s) 790, 888, 895, 955, 1057
Hpy188I TCNGA 2 cut(s) 688, 859
Hpy188III TCNNGA 2 cut(s) 109, 541
Hpy8I GTNNAC 5 cut(s) 790, 888, 895, 955, 1057
Hpy99I CGWCG 2 cut(s) 859, 892
HpyAV CCTTC 5 cut(s) 166, 199, 346, 389, 598
HpyCH4III ACNGT 2 cut(s) 892, 1136
HpyCH4IV ACGT 2 cut(s) 594, 812
HpyCH4V TGCA 4 cut(s) 288, 731, 820, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 429, 701, 995, 1004
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 2 cut(s) 594, 812
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 3 cut(s) 22, 950, 989
Ksp22I TGATCA 1 cut(s) 807
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 3 cut(s) 273, 634, 807
LmnI GCTCC 3 cut(s) 5, 158, 1124
Lsp1109I GCAGC 3 cut(s) 272, 825, 832
MaeI CTAG 1 cut(s) 395
MaeII ACGT 2 cut(s) 594, 812
MaeIII GTNAC 4 cut(s) 22, 341, 553, 706
MalI GATC 3 cut(s) 275, 636, 809
MbiI CCGCTC 2 cut(s) 141, 153
MboI GATC 3 cut(s) 273, 634, 807
MboII GAAGA 2 cut(s) 187, 662
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 720
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 2 cut(s) 495, 675
MluNI TGGCCA 1 cut(s) 737
MlyI GAGTC 2 cut(s) 780, 1042
MmeI TCCRAC 2 cut(s) 465, 837
Mox20I TGGCCA 1 cut(s) 737
MroXI GAANNNNTTC 2 cut(s) 669, 1016
MscI TGGCCA 1 cut(s) 737
MseI TTAA 3 cut(s) 789, 915, 1162
MslI CAYNNNNRTG 4 cut(s) 299, 319, 731, 984
Msp20I TGGCCA 1 cut(s) 737
MspI CCGG 5 cut(s) 297, 604, 616, 1052, 1103
MspR9I CCNGG 3 cut(s) 259, 531, 605
MvaI CCWGG 2 cut(s) 259, 531
MvnI CGCG 1 cut(s) 663
MwoI GCNNNNNNNGC 5 cut(s) 138, 429, 701, 995, 1004
NciI CCSGG 1 cut(s) 605
NdeII GATC 3 cut(s) 273, 634, 807
NlaIII CATG 3 cut(s) 22, 950, 989
NlaIV GGNNCC 2 cut(s) 72, 275
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 950
OliI CACNNNNGTG 2 cut(s) 299, 319
PceI AGGCCT 1 cut(s) 1064
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdmI GAANNNNTTC 2 cut(s) 669, 1016
PfeI GAWTC 1 cut(s) 941
PflFI GACNNNGTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 991
PinAI ACCGGT 1 cut(s) 615
PkrI GCNGC 6 cut(s) 287, 326, 431, 822, 840, 843
PleI GAGTC 2 cut(s) 779, 1042
PpsI GAGTC 2 cut(s) 779, 1042
Ppu21I YACGTR 1 cut(s) 813
Psp6I CCWGG 2 cut(s) 257, 529
PspEI GGTNACC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 2 cut(s) 257, 529
PspN4I GGNNCC 2 cut(s) 72, 275
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 4 cut(s) 581, 815, 1031, 1148
RsaNI GTAC 4 cut(s) 580, 814, 1030, 1147
RseI CAYNNNNRTG 4 cut(s) 299, 319, 731, 984
SalI GTCGAC 1 cut(s) 886
SaqAI TTAA 3 cut(s) 789, 915, 1162
SatI GCNGC 6 cut(s) 286, 325, 430, 821, 839, 842
Sau3AI GATC 3 cut(s) 273, 634, 807
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 2 cut(s) 780, 1042
ScrFI CCNGG 3 cut(s) 259, 531, 605
SduI GDGCHC 1 cut(s) 720
SfcI CTRYAG 1 cut(s) 1033
SgrAI CRCCGGYG 1 cut(s) 296
SmiMI CAYNNNNRTG 4 cut(s) 299, 319, 731, 984
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 2 cut(s) 495, 675
SseBI AGGCCT 1 cut(s) 1064
SsiI CCGC 8 cut(s) 139, 151, 324, 427, 430, 661, 724, 842
SspI AATATT 1 cut(s) 651
SspMI CTAG 1 cut(s) 395
StuI AGGCCT 1 cut(s) 1064
StyD4I CCNGG 3 cut(s) 257, 529, 603
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 892, 1136
TaiI ACGT 2 cut(s) 597, 815
TaqI TCGA 4 cut(s) 456, 656, 887, 1041
TasI AATT 2 cut(s) 495, 675
TatI WGTACW 2 cut(s) 579, 1029
TauI GCSGC 3 cut(s) 327, 432, 844
TfiI GAWTC 1 cut(s) 941
Tru1I TTAA 3 cut(s) 789, 915, 1162
Tru9I TTAA 3 cut(s) 789, 915, 1162
TscAI CASTG 4 cut(s) 134, 346, 996, 1014
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 3 cut(s) 285, 820, 838
Tsp45I GTSAC 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 4 cut(s) 134, 346, 996, 1014
Tth111I GACNNNGTC 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 991
XagI CCTNNNNNAGG 1 cut(s) 1069
XapI RAATTY 2 cut(s) 495, 675
XceI RCATGY 1 cut(s) 950
XmiI GTMKAC 1 cut(s) 887
XmnI GAANNNNTTC 2 cut(s) 669, 1016
XspI CTAG 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.