Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006829

Physical Location & Seq

Genomic Coordinates Reverse (-)

4017830 .. 4018631

Gene Structure 802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATGATCTCTCGTCGATTGGTTTCAAAATTCCTTAAACCCTTGTCTTCTCCATCTTTCCACGTCTCTCGCCGTCATCTCCAATCTTCCTCATCTCTCATAAGAAACCATCTGATCCACGGATCAGTAACTAAGGAGCTTGGTCTCTTAAGATCCTTTTCTGTTTTCAATATCGACAAACTTAGATCTGAAACATGGTCACCGAGGTATTTCTCGACACCAAGCGGAGAGACCGAGCCGAAGAAGCCAGAGGAATCGAAGGAAGAGGAGCTGCAGAAGATGAAGCACCAGGAGATCGAAGGACCAACTGTGGAACGCGATTTGTCAGCGTTAGGAAATGAGACGAGACAAGTGTTGGAAGGGATGATGAAGAATATGTATAGTCTAAGTGGAGCTATGGGTGCTTTGGGTTTAACTCAATTGATTCTTGGAGCGGCGATTTTATACGCCACTCGAGCAGATCCGATGAAGGAAATGACAATTCAGAGCTGTATAGCTTTCGGATTCCCGTTTGCGATGGCGTTGATGGTGAGAAGATCGTTGAAGCCAATGTACTTCTTCAAGAAGATGGAAGAGTTAGGTAGGCTGCAGATTCTTACTTTGACACTTCAAGTTGCTAAGAATCTCAATCTGTTGTTCGTTAGAGCTCGTGTTGTTTCCATCTTGTGCGTTGTTGCCTTGTGTTTCGGTAACTTGTTCCTCTTGTTATCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.89

Weight (kDa)

9.8

Isoelectric Point (pI)

65.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12650
fragaria_vesca	FvH4_7g00860 FvH4_7g00860 FvH4_7g00860
malus_domestica	MD02G1314200.v1.1 MD07G1007900.v1.1
prunus_persica	Prupe.2G010600_v2.0.a1
pyrus_communis	pycom02g26340 pycom07g00650
rosa_chinensis	RchiOBHm_Chr1g0315011 RchiOBHm_Chr1g0315191 RchiOBHm_Chr1g0315371 RchiOBHm_Chr1g0315521 RchiOBHm_Chr1g0315651
rosa_laevigata	RLG00000030740
rosa_multiflora	Rmu_sc0000576.1_g000014 Rmu_sc0000576.1_g000024 Rmu_sc0004180.1_g000014 Rmu_sc0004180.1_g000036
rosa_roxburghii	Rroxscaffold_4G00331550
rosa_rugosa	Rorug01G0004600
rosa_samantha	Rh1AG014900 Rh1AG015800 Rh1BG007700 Rh1BG008100
rosa_wichuraiana	Rw1G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	434
AccII	CGCG	1 cut(s)	318
AciI	CCGC	2 cut(s)	225, 434
AclWI	GGATC	4 cut(s)	109, 130, 147, 455
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	554
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	5 cut(s)	27, 169, 544, 562, 611
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	6 cut(s)	139, 271, 395, 489, 497, 647
AluI	AGCT	6 cut(s)	139, 271, 395, 489, 497, 647
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	5 cut(s)	70, 149, 224, 335, 340
AlwI	GGATC	4 cut(s)	109, 130, 147, 455
Ama87I	CYCGRG	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	271, 586
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	192, 541, 702
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	649
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	258, 573
BccI	CCATC	6 cut(s)	61, 117, 511, 520, 562, 668
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	5 cut(s)	70, 149, 224, 335, 340
BfmI	CTRYAG	2 cut(s)	272, 587
BfrI	CTTAAG	1 cut(s)	148
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	3 cut(s)	272, 435, 587
BlsI	GCNGC	3 cut(s)	273, 436, 588
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	149, 224
BsaJI	CCNNGG	2 cut(s)	118, 203
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	118, 203
BseGI	GGATG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	258, 573
Bsh1236I	CGCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	453
BsmAI	GTCTC	5 cut(s)	70, 149, 224, 335, 340
BsmBI	CGTCTC	2 cut(s)	70, 335
Bso31I	GGTCTC	2 cut(s)	149, 224
BsoBI	CYCGRG	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
BspACI	CCGC	2 cut(s)	225, 434
BspFNI	CGCG	1 cut(s)	318
BspMAI	CTGCAG	2 cut(s)	276, 591
BspPI	GGATC	4 cut(s)	109, 130, 147, 455
BspTI	CTTAAG	1 cut(s)	148
BspTNI	GGTCTC	2 cut(s)	149, 224
BsrBI	CCGCTC	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	118, 203
BssMI	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	258, 567
BstAFI	CTTAAG	1 cut(s)	148
BstDEI	CTNAG	4 cut(s)	132, 182, 386, 618
BstDSI	CCRYGG	1 cut(s)	118
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	318
BstKTI	GATC	8 cut(s)	9, 117, 125, 155, 188, 297, 463, 539
BstMAI	GTCTC	5 cut(s)	70, 149, 224, 335, 340
BstMBI	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 401, 455
BstNI	CCWGG	1 cut(s)	290
BstPI	GGTNACC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	2 cut(s)	272, 587
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	258, 573
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	3 cut(s)	152, 185, 460
BstYI	RGATCY	3 cut(s)	152, 185, 460
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	530
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	2 cut(s)	195, 714
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	4 cut(s)	132, 182, 386, 618
DpnI	GATC	8 cut(s)	8, 116, 124, 154, 187, 296, 462, 538
DpnII	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
Eam1104I	CTCTTC	2 cut(s)	258, 567
EarI	CTCTTC	2 cut(s)	258, 567
Ecl136II	GAGCTC	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	649
Eco31I	GGTCTC	2 cut(s)	149, 224
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	649
Esp3I	CGTCTC	2 cut(s)	70, 335
FaeI	CATG	2 cut(s)	198, 717
FaiI	YATR	8 cut(s)	101, 196, 377, 381, 398, 445, 494, 715
FatI	CATG	2 cut(s)	194, 713
Fnu4HI	GCNGC	3 cut(s)	272, 435, 587
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	3 cut(s)	272, 435, 587
GluI	GCNGC	3 cut(s)	272, 435, 587
Hin1II	CATG	2 cut(s)	198, 717
HinfI	GANTC	5 cut(s)	254, 424, 504, 592, 622
HphI	GGTGA	3 cut(s)	192, 541, 702
Hpy188I	TCNGA	5 cut(s)	114, 190, 465, 486, 503
Hpy188III	TCNNGA	2 cut(s)	214, 562
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	4 cut(s)	253, 293, 353, 463
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	274, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 401, 455
HpyF3I	CTNAG	4 cut(s)	132, 182, 386, 618
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	198, 717
Kzo9I	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
LmnI	GCTCC	4 cut(s)	136, 268, 392, 431
LpnPI	CCDG	3 cut(s)	261, 275, 302
Lsp1109I	GCAGC	2 cut(s)	258, 573
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	127, 198, 689
MalI	GATC	8 cut(s)	8, 116, 124, 154, 187, 296, 462, 538
MbiI	CCGCTC	1 cut(s)	434
MboI	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	3 cut(s)	152, 185, 460
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	3 cut(s)	29, 419, 480
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	100, 198, 244, 259, 710
MseI	TTAA	3 cut(s)	36, 149, 413
MspCI	CTTAAG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	244, 401, 455
NdeII	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
NlaIII	CATG	2 cut(s)	198, 717
NmuCI	GTSAC	1 cut(s)	198
PaeR7I	CTCGAG	1 cut(s)	453
PfeI	GAWTC	5 cut(s)	254, 424, 504, 592, 622
PkrI	GCNGC	3 cut(s)	273, 436, 588
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	288
PspEI	GGTNACC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	302
PspXI	VCTCGAGB	1 cut(s)	453
PstI	CTGCAG	2 cut(s)	276, 591
PsuI	RGATCY	3 cut(s)	152, 185, 460
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	36, 149, 413
SatI	GCNGC	3 cut(s)	272, 435, 587
Sau3AI	GATC	8 cut(s)	6, 114, 122, 152, 185, 294, 460, 536
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	649
SetI	ASST	9 cut(s)	66, 141, 209, 273, 397, 491, 499, 583, 649
SfcI	CTRYAG	2 cut(s)	272, 587
Sfr274I	CTCGAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	148, 453
SmoI	CTYRAG	2 cut(s)	148, 453
Sse9I	AATT	3 cut(s)	29, 419, 480
SsiI	CCGC	2 cut(s)	225, 434
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	6 cut(s)	16, 174, 215, 257, 297, 454
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	29, 419, 480
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	5 cut(s)	254, 424, 504, 592, 622
Tru1I	TTAA	3 cut(s)	36, 149, 413
Tru9I	TTAA	3 cut(s)	36, 149, 413
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	2 cut(s)	271, 586
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	296, 383, 482
TspGWI	ACGGA	1 cut(s)	135
Vha464I	CTTAAG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.