FvH4_7g00860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006829
Physical Location & Seq
Reverse (-)
1323507 .. 1326992
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00860.t2

Sequence Viewer

Length: 798 bp
ATGGCTGCCGCCTTCATCTCTCGCCGATTCAGCTCAAAACTTGTAAGACCCTCTAAGTCTTGCTCGTCATTCTCCTCCAACTTCTTCACCCAAAACCTCCAAAACCCTACGCCTAAACCCTTGACTCACTTTTCCAATTCCACTTTCTCACAAACCCCCTCAAACCCTTTCACCTCTTCCTCAAACCCCAACTCCTTTTTCCAAGACTACAAAACAACACCACCAAATCCAAAACCTTTCAATCGAAATTCCACTAAAGGCTTGGCCTTTGATCCATCTTTGTCTTCTTCGATTCACCAAAGGGTTTTTGATCCAAAACTCAGCAATTTCAATCTTGGTACTTTTACCCAATTGAACACTACTCCCAGATTCAAATGGCCTTCGGATAATAGACCCAGATTTCTTTCAACCTCGGGCTCATCAGAGCCTGAGAAACCCCAAAACCCAAGTGAGTACCCAAGTCAAAACCCTAATTTCAAGCACCAAGAAATCGAAGGACCCACTGTGGAGCGAGACCTCTCTGATTTGGGAAATGAAACCCGAACAGTTCTTGAAACGATGGCCAAGAACATGTACAATCTGAGCAGGACTGTAGCTCTTCTGGGTTTGGTTCAACTCGCTCTTGGAGCTTACATTTCATACATGACTCGGTCTTCACCAATACCCGAAGTCTCGATTCAGAGCTTCTTGGCATTCGGGTTTCCGTTTTCTTTGGCATTCATGTTGAGGCAGTCTCTGAAGCCAATCTACTTCTTTAAGAAAATGGAGGAGCAAGGTAAGAGACAAACTCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.0

Weight (kDa)

9.92

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 266, 305
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 3 cut(s) 340, 455, 575
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 8 cut(s) 241, 331, 355, 373, 408, 478, 554, 614
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 182, 214
AluBI AGCT 4 cut(s) 33, 596, 629, 684
AluI AGCT 4 cut(s) 33, 596, 629, 684
Alw26I GTCTC 4 cut(s) 507, 676, 738, 775
AlwI GGATC 2 cut(s) 266, 305
AlwNI CAGNNNCTG 2 cut(s) 428, 736
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 3 cut(s) 264, 377, 561
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 4 cut(s) 79, 163, 287, 648
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 563
BanII GRGCYC 1 cut(s) 419
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BbsI GAAGAC 2 cut(s) 276, 645
BccI CCATC 2 cut(s) 283, 553
BcoDI GTCTC 4 cut(s) 507, 676, 738, 775
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme18I GGWCC 1 cut(s) 497
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 499
BpiI GAAGAC 2 cut(s) 276, 645
BplI GAGNNNNNCTC 3 cut(s) 718, 750, 772
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
BseDI CCNNGG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 334, 420, 572
BseRI GAGGAG 2 cut(s) 64, 782
BshFI GGCC 3 cut(s) 266, 379, 563
BsiHKCI CYCGRG 1 cut(s) 412
BsmAI GTCTC 4 cut(s) 507, 676, 738, 775
BsmI GAATGC 2 cut(s) 692, 716
BsnI GGCC 3 cut(s) 266, 379, 563
Bso31I GGTCTC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 419
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 2 cut(s) 271, 310
BspACI CCGC 1 cut(s) 9
BspANI GGCC 3 cut(s) 266, 379, 563
BspCNI CTCAG 3 cut(s) 333, 421, 573
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 2 cut(s) 266, 305
BspQI GCTCTTC 1 cut(s) 603
BspTNI GGTCTC 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 573
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 2 cut(s) 271, 310
Bst4CI ACNGT 3 cut(s) 505, 547, 592
Bst6I CTCTTC 2 cut(s) 181, 603
BstAUI TGTACA 1 cut(s) 573
BstDEI CTNAG 4 cut(s) 54, 320, 429, 581
BstKTI GATC 2 cut(s) 274, 313
BstMAI GTCTC 4 cut(s) 507, 676, 738, 775
BstMBI GATC 2 cut(s) 271, 310
BstMWI GCNNNNNNNGC 2 cut(s) 30, 626
BstNSI RCATGY 1 cut(s) 574
BstSFI CTRYAG 1 cut(s) 591
BstV2I GAAGAC 2 cut(s) 276, 645
BsuRI GGCC 3 cut(s) 266, 379, 563
BtsIMutI CAGTG 1 cut(s) 501
CaiI CAGNNNCTG 2 cut(s) 428, 736
Cfr13I GGNCC 1 cut(s) 497
Csp6I GTAC 3 cut(s) 339, 454, 574
CviAII CATG 3 cut(s) 571, 643, 721
CviQI GTAC 3 cut(s) 339, 454, 574
DdeI CTNAG 4 cut(s) 54, 320, 429, 581
DpnI GATC 2 cut(s) 273, 312
DpnII GATC 2 cut(s) 271, 310
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 181, 603
EarI CTCTTC 2 cut(s) 181, 603
Eco24I GRGCYC 1 cut(s) 419
Eco31I GGTCTC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 419
FaeI CATG 3 cut(s) 574, 646, 724
FaiI YATR 4 cut(s) 572, 640, 644, 722
FatI CATG 3 cut(s) 570, 642, 720
Fnu4HI GCNGC 2 cut(s) 6, 9
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
HaeIII GGCC 3 cut(s) 266, 379, 563
Hin1II CATG 3 cut(s) 574, 646, 724
HinfI GANTC 6 cut(s) 27, 124, 292, 369, 646, 676
HphI GGTGA 4 cut(s) 79, 163, 287, 648
Hpy188I TCNGA 6 cut(s) 385, 424, 523, 582, 681, 738
Hpy188III TCNNGA 2 cut(s) 551, 673
HpyAV CCTTC 3 cut(s) 22, 390, 488
HpyCH4III ACNGT 3 cut(s) 505, 547, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 626
HpyF3I CTNAG 4 cut(s) 54, 320, 429, 581
Hsp92II CATG 3 cut(s) 574, 646, 724
Kzo9I GATC 2 cut(s) 271, 310
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 3 cut(s) 508, 626, 769
LpnPI CCDG 5 cut(s) 379, 409, 441, 571, 587
MalI GATC 2 cut(s) 273, 312
MboI GATC 2 cut(s) 271, 310
MboII GAAGA 6 cut(s) 76, 168, 276, 279, 590, 645
MfeI CAATTG 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 419
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 5 cut(s) 136, 247, 325, 350, 472
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 2 cut(s) 118, 640
MmeI TCCRAC 1 cut(s) 102
Mox20I TGGCCA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 563
MseI TTAA 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 563
MunI CAATTG 1 cut(s) 350
Mva1269I GAATGC 2 cut(s) 692, 716
MwoI GCNNNNNNNGC 2 cut(s) 30, 626
NdeII GATC 2 cut(s) 271, 310
NlaIII CATG 3 cut(s) 574, 646, 724
NlaIV GGNNCC 1 cut(s) 499
NspI RCATGY 1 cut(s) 574
PciI ACATGT 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 603
PctI GAATGC 2 cut(s) 692, 716
PfeI GAWTC 4 cut(s) 27, 292, 369, 676
PflFI GACNNNGTC 1 cut(s) 649
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 2 cut(s) 118, 640
PpsI GAGTC 2 cut(s) 118, 640
PpuMI RGGWCCY 1 cut(s) 497
PscI ACATGT 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 497
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 497
PspPPI RGGWCCY 1 cut(s) 497
PstNI CAGNNNCTG 2 cut(s) 428, 736
PsyI GACNNNGTC 1 cut(s) 649
RsaI GTAC 3 cut(s) 340, 455, 575
RsaNI GTAC 3 cut(s) 339, 454, 574
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 271, 310
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 2 cut(s) 118, 640
SduI GDGCHC 1 cut(s) 419
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 1 cut(s) 497
Sse9I AATT 5 cut(s) 136, 247, 325, 350, 472
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 794
TaaI ACNGT 3 cut(s) 505, 547, 592
TaqI TCGA 4 cut(s) 244, 290, 492, 674
TaqII GACCGA 1 cut(s) 639
TasI AATT 5 cut(s) 136, 247, 325, 350, 472
TatI WGTACW 1 cut(s) 573
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 4 cut(s) 27, 292, 369, 676
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 1 cut(s) 508
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 4, 549, 627, 709
TspGWI ACGGA 1 cut(s) 693
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 649
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.