Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006829

Physical Location & Seq

Genomic Coordinates Reverse (-)

36953000 .. 36953950

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1314200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCCGCCATGATCACACGCAGATTCAGCTCCAAGCTTTCACGACTCTATCATCATCATCATTCATCCTTGTCTGCATCCTCCACCTACCTCGCCGCCCAAAACCTCCAAAACCCTAAAATCCCAGACCACTTCACTCACTCCTCCTATTCCACTCTCTCCCCAAATCCTTTCAAATCTTCATCAAACCCCACCACCATTATCGATCATTACATAAAATCATCAAATCCAAAACCCATAAACCATAATCTAACTTGGGTACTCAATTCAAAATCCATTACTCAAAACCCTGAATTCAAAAAAACCAATCTTGGTCTTACTTTTACACAATCGTGTTCAAGGTTCAGTACCAATTTGTACAATCCTAGGTTTAATGGGTCATCAGATCAAAAACCCAGATTTTTTTCAACTTCTTCTAGTTCACCGTCACCGGATCCAGAATCTGAAAAATCCCAAAACCCAGAATCTGAAAAGCCCCAAAACCCAAATGAATACCCTAGTCAAAACCCTAACTTCAAGCACCAAGAAATCGAAGGACCGACGGTGGAGCGAGACCTTTCGACTTTGGCCAATGAGACCAGAGAAGTTCTGGAATCGATGGCCAAAAACATGTATAGTCTGAGCAGGGCATTGGCTCTTCTGGGTTTGGCTCAACTCGGCGTCGGAGCTTGGATTTCGTACATTACCATATCGACCCCAATGCCGGAGGTTTCAGTTCAGAGCATTTTGGCTTTCGGGTTACCCTTTACGCTGGCGTTCATGTTGAGGCAGAGTTTGAAGTCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGCAGGCTGCAGATTCTGACTCTCACCCTTCAGGTTGGTAAGAATTTGAATGTCTTCTTCGTTCGTGTTCGCGGCGTTTCATTCTTGTGCATTGCTGGCTTGTCAGTCGGAGTGTTGTTCGCTGCGCTTACGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.35

Weight (kDa)

9.67

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12650
fragaria_vesca	FvH4_7g00860 FvH4_7g00860 FvH4_7g00860
malus_domestica	MD02G1314200.v1.1 MD07G1007900.v1.1
prunus_persica	Prupe.2G010600_v2.0.a1
pyrus_communis	pycom02g26340 pycom07g00650
rosa_chinensis	RchiOBHm_Chr1g0315011 RchiOBHm_Chr1g0315191 RchiOBHm_Chr1g0315371 RchiOBHm_Chr1g0315521 RchiOBHm_Chr1g0315651
rosa_laevigata	RLG00000030740
rosa_multiflora	Rmu_sc0000576.1_g000014 Rmu_sc0000576.1_g000024 Rmu_sc0004180.1_g000014 Rmu_sc0004180.1_g000036
rosa_roxburghii	Rroxscaffold_4G00331550
rosa_rugosa	Rorug01G0004600
rosa_samantha	Rh1AG014900 Rh1AG015800 Rh1BG007700 Rh1BG008100
rosa_wichuraiana	Rw1G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	885
AciI	CCGC	3 cut(s)	6, 96, 885
AclWI	GGATC	2 cut(s)	428, 441
AcoI	YGGCCR	3 cut(s)	3, 567, 600
AcsI	RAATTY	2 cut(s)	293, 856
AcuI	CTGAAG	1 cut(s)	827
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	4 cut(s)	261, 349, 359, 680
AfiI	CCNNNNNNNGG	1 cut(s)	703
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	8 cut(s)	175, 270, 298, 339, 408, 517, 778, 862
AleI	CACNNNNGTG	1 cut(s)	331
AluBI	AGCT	3 cut(s)	30, 37, 668
AluI	AGCT	3 cut(s)	30, 37, 668
Alw26I	GTCTC	2 cut(s)	546, 569
AlwI	GGATC	2 cut(s)	428, 441
AlwNI	CAGNNNCTG	3 cut(s)	443, 467, 829
AoxI	GGCC	3 cut(s)	3, 567, 600
ApeKI	GCWGC	2 cut(s)	820, 935
ApoI	RAATTY	2 cut(s)	293, 856
Asp700I	GAANNNNTTC	1 cut(s)	866
AspA2I	CCTAGG	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	940
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	3 cut(s)	414, 420, 829
AvaII	GGWCC	1 cut(s)	536
AvrII	CCTAGG	1 cut(s)	365
BalI	TGGCCA	2 cut(s)	569, 602
BamHI	GGATCC	1 cut(s)	433
BarI	GAAGNNNNNNTAC	2 cut(s)	770, 802
BbsI	GAAGAC	1 cut(s)	859
BbvI	GCAGC	2 cut(s)	807, 922
BccI	CCATC	2 cut(s)	592, 796
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	546, 569
BfaI	CTAG	3 cut(s)	366, 417, 498
BfmI	CTRYAG	1 cut(s)	821
BisI	GCNGC	5 cut(s)	6, 96, 821, 886, 936
BlnI	CCTAGG	1 cut(s)	365
BlsI	GCNGC	5 cut(s)	7, 97, 822, 887, 937
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	859
Bsa29I	ATCGAT	2 cut(s)	204, 596
BsaHI	GRCGYC	1 cut(s)	660
BsaI	GGTCTC	2 cut(s)	546, 569
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse3DI	GCAATG	1 cut(s)	903
BseCI	ATCGAT	2 cut(s)	204, 596
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	65, 77
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	1 cut(s)	611
BseRI	GAGGAG	2 cut(s)	133, 821
BseXI	GCAGC	2 cut(s)	807, 922
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	3 cut(s)	5, 569, 602
BshVI	ATCGAT	2 cut(s)	204, 596
BsiSI	CCGG	2 cut(s)	431, 704
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	2 cut(s)	546, 569
BsnI	GGCC	3 cut(s)	5, 569, 602
Bso31I	GGTCTC	2 cut(s)	546, 569
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	12, 205, 385, 433
BspACI	CCGC	3 cut(s)	6, 96, 885
BspANI	GGCC	3 cut(s)	5, 569, 602
BspCNI	CTCAG	1 cut(s)	612
BspDI	ATCGAT	2 cut(s)	204, 596
BspFNI	CGCG	1 cut(s)	885
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	2 cut(s)	428, 441
BspQI	GCTCTTC	1 cut(s)	642
BspTNI	GGTCTC	2 cut(s)	546, 569
BsrDI	GCAATG	1 cut(s)	903
BsrGI	TGTACA	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	4 cut(s)	12, 205, 385, 433
BssNI	GRCGYC	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	426, 544
Bst6I	CTCTTC	1 cut(s)	642
BstACI	GRCGYC	1 cut(s)	660
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	753, 818, 910
BstDEI	CTNAG	1 cut(s)	620
BstEII	GGTNACC	1 cut(s)	738
BstF5I	GGATG	2 cut(s)	65, 77
BstFNI	CGCG	1 cut(s)	885
BstHHI	GCGC	1 cut(s)	940
BstKTI	GATC	4 cut(s)	15, 208, 388, 436
BstMAI	GTCTC	2 cut(s)	546, 569
BstMBI	GATC	4 cut(s)	12, 205, 385, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 817, 909
BstNSI	RCATGY	1 cut(s)	613
BstPI	GGTNACC	1 cut(s)	738
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	2 cut(s)	807, 922
BstV2I	GAAGAC	1 cut(s)	859
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	2 cut(s)	204, 596
BsuRI	GGCC	3 cut(s)	5, 569, 602
BsuTUI	ATCGAT	2 cut(s)	204, 596
BtsCI	GGATG	2 cut(s)	65, 77
Cac8I	GCNNGC	3 cut(s)	753, 818, 910
CaiI	CAGNNNCTG	3 cut(s)	443, 467, 829
CfoI	GCGC	1 cut(s)	940
Cfr13I	GGNCC	1 cut(s)	536
ClaI	ATCGAT	2 cut(s)	204, 596
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	4 cut(s)	260, 348, 358, 679
CviAII	CATG	3 cut(s)	10, 610, 760
CviQI	GTAC	4 cut(s)	260, 348, 358, 679
DdeI	CTNAG	1 cut(s)	620
DpnI	GATC	4 cut(s)	14, 207, 387, 435
DpnII	GATC	4 cut(s)	12, 205, 385, 433
EaeI	YGGCCR	3 cut(s)	3, 567, 600
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	365
Eco31I	GGTCTC	2 cut(s)	546, 569
Eco47I	GGWCC	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	827
Eco91I	GGTNACC	1 cut(s)	738
EcoO65I	GGTNACC	1 cut(s)	738
EcoRI	GAATTC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	3 cut(s)	13, 613, 763
FaiI	YATR	8 cut(s)	11, 215, 239, 246, 611, 615, 689, 761
FatI	CATG	3 cut(s)	9, 609, 759
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	6, 96, 821, 886, 936
FokI	GGATG	2 cut(s)	52, 64
Fsp4HI	GCNGC	5 cut(s)	6, 96, 821, 886, 936
FspBI	CTAG	3 cut(s)	366, 417, 498
GlaI	GCGC	1 cut(s)	939
GluI	GCNGC	5 cut(s)	6, 96, 821, 886, 936
HaeIII	GGCC	3 cut(s)	5, 569, 602
HapII	CCGG	2 cut(s)	431, 704
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	1 cut(s)	940
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	3 cut(s)	13, 613, 763
Hin6I	GCGC	1 cut(s)	938
HinP1I	GCGC	1 cut(s)	938
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	7 cut(s)	24, 45, 440, 464, 593, 826, 832
HpaII	CCGG	2 cut(s)	431, 704
HphI	GGTGA	3 cut(s)	414, 420, 829
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	8 cut(s)	385, 445, 469, 621, 665, 720, 831, 923
Hpy188III	TCNNGA	3 cut(s)	42, 437, 590
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	2 cut(s)	544, 665
HpyAV	CCTTC	2 cut(s)	527, 851
HpyCH4III	ACNGT	2 cut(s)	426, 544
HpyCH4V	TGCA	3 cut(s)	77, 823, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 817, 909
HpyF3I	CTNAG	1 cut(s)	620
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	3 cut(s)	13, 613, 763
HspAI	GCGC	1 cut(s)	938
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	12, 205, 385, 433
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	4 cut(s)	35, 547, 665, 808
Lsp1109I	GCAGC	2 cut(s)	807, 922
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	3 cut(s)	366, 417, 498
MaeIII	GTNAC	2 cut(s)	426, 738
MalI	GATC	4 cut(s)	14, 207, 387, 435
MboI	GATC	4 cut(s)	12, 205, 385, 433
MboII	GAAGA	6 cut(s)	171, 405, 629, 811, 859, 862
MflI	RGATCY	1 cut(s)	433
MlsI	TGGCCA	2 cut(s)	569, 602
MluCI	AATT	4 cut(s)	265, 293, 352, 856
MluNI	TGGCCA	2 cut(s)	569, 602
MlyI	GAGTC	2 cut(s)	39, 826
MmeI	TCCRAC	2 cut(s)	643, 901
MnlI	CCTC	7 cut(s)	91, 101, 116, 154, 700, 759, 799
Mox20I	TGGCCA	2 cut(s)	569, 602
MroXI	GAANNNNTTC	1 cut(s)	866
MscI	TGGCCA	2 cut(s)	569, 602
MseI	TTAA	2 cut(s)	372, 795
MslI	CAYNNNNRTG	2 cut(s)	331, 898
Msp20I	TGGCCA	2 cut(s)	569, 602
MspI	CCGG	2 cut(s)	431, 704
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	3 cut(s)	27, 817, 909
NdeII	GATC	4 cut(s)	12, 205, 385, 433
NlaIII	CATG	3 cut(s)	13, 613, 763
NlaIV	GGNNCC	1 cut(s)	435
NmeAIII	GCCGAG	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	613
OliI	CACNNNNGTG	1 cut(s)	331
PciI	ACATGT	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	5 cut(s)	24, 440, 464, 593, 826
PkrI	GCNGC	5 cut(s)	7, 97, 822, 887, 937
PleI	GAGTC	2 cut(s)	39, 826
PpsI	GAGTC	2 cut(s)	39, 826
PscI	ACATGT	1 cut(s)	609
PspEI	GGTNACC	1 cut(s)	738
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	825
PstNI	CAGNNNCTG	3 cut(s)	443, 467, 829
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	4 cut(s)	261, 349, 359, 680
RsaNI	GTAC	4 cut(s)	260, 348, 358, 679
RseI	CAYNNNNRTG	2 cut(s)	331, 898
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	372, 795
SatI	GCNGC	5 cut(s)	6, 96, 821, 886, 936
Sau3AI	GATC	4 cut(s)	12, 205, 385, 433
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	2 cut(s)	39, 826
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	821
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	2 cut(s)	331, 898
Sse9I	AATT	4 cut(s)	265, 293, 352, 856
SsiI	CCGC	3 cut(s)	6, 96, 885
SspMI	CTAG	3 cut(s)	366, 417, 498
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	426, 544
TaqI	TCGA	5 cut(s)	204, 531, 560, 596, 692
TaqII	GACCGA	1 cut(s)	553
TasI	AATT	4 cut(s)	265, 293, 352, 856
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	3 cut(s)	8, 98, 888
TfiI	GAWTC	5 cut(s)	24, 440, 464, 593, 826
Tru1I	TTAA	2 cut(s)	372, 795
Tru9I	TTAA	2 cut(s)	372, 795
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	2 cut(s)	820, 935
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	5 cut(s)	54, 171, 504, 748, 882
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	293, 856
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmaJI	CCTAGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	3 cut(s)	366, 417, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.