Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006829

Physical Location & Seq

Genomic Coordinates Forward (+)

65530459 .. 65531367

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTGCCGCCTTGATCTCTCGCAGATTCAGACCCTCTCACTGTTCTTCATCATTCTCCTCCATATCCTCCACATACTTCATCGCCCAAAAGCTCCAAAACCCTACTCCTAAACCATTCACTCACCTGTCCAATTCCACTTTCTCACAAACACCCTCAAACCCTTTCACATCTACTTCAAACCCCAACTCCATTTTCAAAGACTACAAAAGAACAGCACCAAATCCAAAACCCTTCAATGAAAAATCCACTAAAGCCTTAGCCTTTGATCCATCTTTGTCTTCTTCGATGCACCAAAGGGTTCTTCATCCAAAGCCCAATAATTTCAATCTTGGTTTTACCGAATTGAACACTCCCAGATTTAAATGGCCGTCGGGTAATAGACCCAGATTTCTTTCAACCTCCGGTTCATCAGAACCTGAGAAACCCCAAAACCCAAGACAGTACCCAAGTCAAAACCCAAATTTCAAGCACCAAGAAATCGAAGGACCGACTGTGGAGCGAGACCTCTCTGATTTGGGCAATGAGACCCGAACAGTCCTTGAAGTGATGGCCAAGAACATGTATAGTCTGAGCAGGACTGTGGCTGTTCTGGGTTTGGTTCAGCTCGGCCTTGGAGCTTACATTTCATACATGACTCGGTCTTCGCCAATACCCGAAGTATCAATTCAGAGCTTTTTGGCATTCGGGTTTCCCTTCTCTTTGGCGTTCATGTTGAGGCAGTCTCTGAAGCCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGTAGGCTGCAAATTCTGACTCTTGCTCTTCAGGTTACTAAGAATTTAAATGTTTTCTTCATTCGGGTTCGTGGGGTGTCTGTCTTGTGTATTGCTGGTTTGTCTGCTGGAGTTTTGTTCGAACTTGCTTACAAGTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.86

Weight (kDa)

10.1

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12650
fragaria_vesca	FvH4_7g00860 FvH4_7g00860 FvH4_7g00860
malus_domestica	MD02G1314200.v1.1 MD07G1007900.v1.1
prunus_persica	Prupe.2G010600_v2.0.a1
pyrus_communis	pycom02g26340 pycom07g00650
rosa_chinensis	RchiOBHm_Chr1g0315011 RchiOBHm_Chr1g0315191 RchiOBHm_Chr1g0315371 RchiOBHm_Chr1g0315521 RchiOBHm_Chr1g0315651
rosa_laevigata	RLG00000030740
rosa_multiflora	Rmu_sc0000576.1_g000014 Rmu_sc0000576.1_g000024 Rmu_sc0004180.1_g000014 Rmu_sc0004180.1_g000036
rosa_roxburghii	Rroxscaffold_4G00331550
rosa_rugosa	Rorug01G0004600
rosa_samantha	Rh1AG014900 Rh1AG015800 Rh1BG007700 Rh1BG008100
rosa_wichuraiana	Rw1G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	2 cut(s)	368, 552
AcsI	RAATTY	3 cut(s)	463, 777, 808
AcuI	CTGAAG	2 cut(s)	749, 779
AfaI	GTAC	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	8 cut(s)	180, 199, 238, 328, 349, 399, 469, 545
AjuI	GAANNNNNNNTTGG	6 cut(s)	125, 157, 179, 211, 288, 320
AluBI	AGCT	4 cut(s)	94, 607, 620, 675
AluI	AGCT	4 cut(s)	94, 607, 620, 675
Alw26I	GTCTC	3 cut(s)	498, 521, 729
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	2 cut(s)	419, 727
AoxI	GGCC	3 cut(s)	368, 552, 610
ApeKI	GCWGC	2 cut(s)	5, 772
ApoI	RAATTY	3 cut(s)	463, 777, 808
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	885
AvaII	GGWCC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	554
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BbsI	GAAGAC	2 cut(s)	273, 636
BbvI	GCAGC	1 cut(s)	759
BccI	CCATC	3 cut(s)	280, 544, 748
BceAI	ACGGC	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	498, 521, 729
BisI	GCNGC	3 cut(s)	6, 9, 773
BlsI	GCNGC	3 cut(s)	7, 10, 774
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	273, 636
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpmI	CTGGAG	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	885
BsaI	GGTCTC	2 cut(s)	498, 521
BsaJI	CCNNGG	1 cut(s)	613
BsaWI	WCCGGW	1 cut(s)	404
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bse3DI	GCAATG	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	411, 563
BseRI	GAGGAG	2 cut(s)	49, 773
BseXI	GCAGC	1 cut(s)	759
BshFI	GGCC	3 cut(s)	370, 554, 612
BsiSI	CCGG	1 cut(s)	405
BsmAI	GTCTC	3 cut(s)	498, 521, 729
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	370, 554, 612
Bso31I	GGTCTC	2 cut(s)	498, 521
Bsp119I	TTCGAA	1 cut(s)	885
Bsp143I	GATC	2 cut(s)	15, 268
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	3 cut(s)	370, 554, 612
BspCNI	CTCAG	2 cut(s)	412, 564
BspPI	GGATC	1 cut(s)	263
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	885
BspTNI	GGTCTC	2 cut(s)	498, 521
BsrDI	GCAATG	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	2 cut(s)	15, 268
BssT1I	CCWWGG	1 cut(s)	613
Bst4CI	ACNGT	5 cut(s)	44, 444, 496, 538, 583
Bst6I	CTCTTC	1 cut(s)	798
BstBI	TTCGAA	1 cut(s)	885
BstDEI	CTNAG	4 cut(s)	259, 420, 572, 804
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	18, 271
BstMAI	GTCTC	3 cut(s)	498, 521, 729
BstMBI	GATC	2 cut(s)	15, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	769
BstNSI	RCATGY	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	759
BstV2I	GAAGAC	2 cut(s)	273, 636
BsuRI	GGCC	3 cut(s)	370, 554, 612
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	40
CaiI	CAGNNNCTG	2 cut(s)	419, 727
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	3 cut(s)	562, 634, 712
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	4 cut(s)	259, 420, 572, 804
DpnI	GATC	2 cut(s)	17, 270
DpnII	GATC	2 cut(s)	15, 268
DraI	TTTAAA	2 cut(s)	364, 813
EaeI	YGGCCR	2 cut(s)	368, 552
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	613
Eco31I	GGTCTC	2 cut(s)	498, 521
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	2 cut(s)	749, 779
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	3 cut(s)	565, 637, 715
FaiI	YATR	7 cut(s)	65, 76, 563, 567, 631, 635, 713
FatI	CATG	3 cut(s)	561, 633, 711
Fnu4HI	GCNGC	3 cut(s)	6, 9, 773
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	6, 9, 773
GluI	GCNGC	3 cut(s)	6, 9, 773
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	3 cut(s)	370, 554, 612
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	3 cut(s)	565, 637, 715
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HinfI	GANTC	3 cut(s)	27, 637, 784
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	903
Hpy188I	TCNGA	7 cut(s)	32, 415, 514, 573, 672, 729, 783
Hpy8I	GTNNAC	1 cut(s)	903
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	244, 479, 706
HpyCH4III	ACNGT	5 cut(s)	44, 444, 496, 538, 583
HpyCH4V	TGCA	2 cut(s)	292, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	769
HpyF3I	CTNAG	4 cut(s)	259, 420, 572, 804
Hsp92II	CATG	3 cut(s)	565, 637, 715
Kzo9I	GATC	2 cut(s)	15, 268
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	4 cut(s)	99, 499, 617, 760
Lsp1109I	GCAGC	1 cut(s)	759
LweI	GCATC	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	2 cut(s)	17, 270
MboI	GATC	2 cut(s)	15, 268
MboII	GAAGA	8 cut(s)	39, 273, 276, 296, 636, 763, 785, 814
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	7 cut(s)	133, 322, 344, 463, 666, 777, 808
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	631, 778
MnlI	CCTC	8 cut(s)	46, 70, 79, 166, 412, 518, 711, 751
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	3 cut(s)	363, 747, 812
Msp20I	TGGCCA	1 cut(s)	554
MspI	CCGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	683
MwoI	GCNNNNNNNGC	1 cut(s)	769
NdeII	GATC	2 cut(s)	15, 268
NlaIII	CATG	3 cut(s)	565, 637, 715
NmeAIII	GCCGAG	1 cut(s)	588
NspI	RCATGY	1 cut(s)	565
NspV	TTCGAA	1 cut(s)	885
PciI	ACATGT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	798
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	640
PkrI	GCNGC	3 cut(s)	7, 10, 774
PleI	GAGTC	2 cut(s)	631, 778
PpsI	GAGTC	2 cut(s)	631, 778
PscI	ACATGT	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	488
PstNI	CAGNNNCTG	2 cut(s)	419, 727
PsyI	GACNNNGTC	1 cut(s)	640
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	363, 747, 812
SatI	GCNGC	3 cut(s)	6, 9, 773
Sau3AI	GATC	2 cut(s)	15, 268
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	2 cut(s)	631, 778
SfaNI	GCATC	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	885
SinI	GGWCC	1 cut(s)	488
SmiI	ATTTAAAT	2 cut(s)	364, 813
Sse9I	AATT	7 cut(s)	133, 322, 344, 463, 666, 777, 808
SsiI	CCGC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	613
SwaI	ATTTAAAT	2 cut(s)	364, 813
TaaI	ACNGT	5 cut(s)	44, 444, 496, 538, 583
TaqI	TCGA	3 cut(s)	287, 483, 885
TaqII	GACCGA	2 cut(s)	505, 630
TasI	AATT	7 cut(s)	133, 322, 344, 463, 666, 777, 808
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	3 cut(s)	363, 747, 812
Tru9I	TTAA	3 cut(s)	363, 747, 812
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	2 cut(s)	5, 772
TspDTI	ATGAA	8 cut(s)	39, 70, 255, 296, 399, 618, 700, 814
TspRI	CASTG	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	3 cut(s)	463, 777, 808
XceI	RCATGY	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.