Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006829

Physical Location & Seq

Genomic Coordinates Reverse (-)

944096 .. 945221

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTGCCGCCTTGATCTCTCGCAGATTCAGCTCAAAGCTCGTAAGACCCTCTCACTCTTGTTCATCATTCTCCTCCATATCCTTCACCTACTTCATCACCCAAAATCTCCAAAACCCTACCCCTAAACCCTTCACTCACTTGTCCAATTCCACTTTCTCACAACCACCTTCAAACCCTTTCACATCTACTTCAAACCCCAACTCCATTTTCATAGACTACAAAAGAACAGCACCAAATCCAAAACCCTTCAATGATAAATCCACTAAAGGCTTGGCCTTTGATCCATCTTTGTCTTCTTTGATGCACCAAAGGGTTCTTGATCCAAAACCCAACAATTTCAATCTTGGTTTTACCGAATTGAACACTCCCAGATTTAAATGGCCGTCGGGTAATAGACCCAGATTTCTTTCAACCTCCGGTTCATCAGAACCTGAGAAACCCCAAAACCCAAGTCAGTACCCAAGTCAAAACCCAAATTTCAAGCACCAAGAAATCGAAGGACCGACTGTGGAGCGAGACCTCTCTGATTTGGGCAATGAGACCCGAACAGTCCTTGAAGTGATGGCCAAGAACATGTATAGTCTGAGCAGGACTGTGGCTGTTCTGGGTTTGGTTCAACTCGGCCTTGGAGCTTACATTTCATACATGAGTCGGTCTTCGCCAATACCCGAAGTATCAATTCAGAGCTTTTTGGCATTCGGGTTTCCCTTCTCTTTGGCGTTCATGTTGAGGCAGTCTCTGAAGCCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGTAGGCTGCAGATTCTGACTCTTGCTCTTCAAGTTGCTAAGAATTTGAATGTTTTCTTCATTCGGGTTCGTGGGGTTTCTGTCTTGTGTATTGCTGGTTTGTCAGCTGGAGTTTTGTTCCAACTTGCTTACAAGTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

34.3

Weight (kDa)

10.0

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12650
fragaria_vesca	FvH4_7g00860 FvH4_7g00860 FvH4_7g00860
malus_domestica	MD02G1314200.v1.1 MD07G1007900.v1.1
prunus_persica	Prupe.2G010600_v2.0.a1
pyrus_communis	pycom02g26340 pycom07g00650
rosa_chinensis	RchiOBHm_Chr1g0315011 RchiOBHm_Chr1g0315191 RchiOBHm_Chr1g0315371 RchiOBHm_Chr1g0315521 RchiOBHm_Chr1g0315651
rosa_laevigata	RLG00000030740
rosa_multiflora	Rmu_sc0000576.1_g000014 Rmu_sc0000576.1_g000024 Rmu_sc0004180.1_g000014 Rmu_sc0004180.1_g000036
rosa_roxburghii	Rroxscaffold_4G00331550
rosa_rugosa	Rorug01G0004600
rosa_samantha	Rh1AG014900 Rh1AG015800 Rh1BG007700 Rh1BG008100
rosa_wichuraiana	Rw1G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	278, 317
AcoI	YGGCCR	2 cut(s)	383, 567
AcsI	RAATTY	2 cut(s)	478, 823
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	576
AjuI	GAANNNNNNNTTGG	4 cut(s)	140, 172, 194, 226
AluBI	AGCT	5 cut(s)	33, 40, 635, 690, 887
AluI	AGCT	5 cut(s)	33, 40, 635, 690, 887
Alw26I	GTCTC	3 cut(s)	513, 536, 744
AlwI	GGATC	2 cut(s)	278, 317
AlwNI	CAGNNNCTG	3 cut(s)	434, 742, 796
AoxI	GGCC	4 cut(s)	276, 383, 567, 625
ApeKI	GCWGC	2 cut(s)	5, 787
ApoI	RAATTY	2 cut(s)	478, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
Asp700I	GAANNNNTTC	1 cut(s)	833
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	79, 91
AvaII	GGWCC	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	569
BarI	GAAGNNNNNNTAC	2 cut(s)	737, 769
BbsI	GAAGAC	2 cut(s)	288, 651
BbvI	GCAGC	1 cut(s)	774
BccI	CCATC	3 cut(s)	295, 559, 763
BceAI	ACGGC	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	513, 536, 744
BfmI	CTRYAG	1 cut(s)	788
BisI	GCNGC	3 cut(s)	6, 9, 788
BlsI	GCNGC	3 cut(s)	7, 10, 789
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	288, 651
BplI	GAGNNNNNCTC	2 cut(s)	724, 756
BpmI	CTGGAG	1 cut(s)	909
BsaI	GGTCTC	2 cut(s)	513, 536
BsaJI	CCNNGG	1 cut(s)	628
BsaWI	WCCGGW	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse3DI	GCAATG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	2 cut(s)	426, 578
BseRI	GAGGAG	2 cut(s)	64, 788
BseXI	GCAGC	1 cut(s)	774
BshFI	GGCC	4 cut(s)	278, 385, 569, 627
BsiSI	CCGG	1 cut(s)	420
BsmAI	GTCTC	3 cut(s)	513, 536, 744
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	4 cut(s)	278, 385, 569, 627
Bso31I	GGTCTC	2 cut(s)	513, 536
Bsp143I	GATC	3 cut(s)	15, 283, 322
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	4 cut(s)	278, 385, 569, 627
BspCNI	CTCAG	2 cut(s)	427, 579
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	2 cut(s)	278, 317
BspQI	GCTCTTC	1 cut(s)	813
BspTNI	GGTCTC	2 cut(s)	513, 536
BsrDI	GCAATG	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	3 cut(s)	15, 283, 322
BssT1I	CCWWGG	1 cut(s)	628
Bst4CI	ACNGT	3 cut(s)	511, 553, 598
Bst6I	CTCTTC	1 cut(s)	813
BstDEI	CTNAG	3 cut(s)	435, 587, 819
BstKTI	GATC	3 cut(s)	18, 286, 325
BstMAI	GTCTC	3 cut(s)	513, 536, 744
BstMBI	GATC	3 cut(s)	15, 283, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 784
BstNSI	RCATGY	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	788
BstV1I	GCAGC	1 cut(s)	774
BstV2I	GAAGAC	2 cut(s)	288, 651
BsuRI	GGCC	4 cut(s)	278, 385, 569, 627
CaiI	CAGNNNCTG	3 cut(s)	434, 742, 796
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	3 cut(s)	577, 649, 727
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	435, 587, 819
DpnI	GATC	3 cut(s)	17, 285, 324
DpnII	GATC	3 cut(s)	15, 283, 322
DraI	TTTAAA	1 cut(s)	379
EaeI	YGGCCR	2 cut(s)	383, 567
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	628
Eco31I	GGTCTC	2 cut(s)	513, 536
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	3 cut(s)	580, 652, 730
FaiI	YATR	7 cut(s)	80, 215, 578, 582, 646, 650, 728
FatI	CATG	3 cut(s)	576, 648, 726
Fnu4HI	GCNGC	3 cut(s)	6, 9, 788
Fsp4HI	GCNGC	3 cut(s)	6, 9, 788
GluI	GCNGC	3 cut(s)	6, 9, 788
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	4 cut(s)	278, 385, 569, 627
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	3 cut(s)	580, 652, 730
HincII	GTYRAC	1 cut(s)	918
HindII	GTYRAC	1 cut(s)	918
HinfI	GANTC	4 cut(s)	27, 652, 793, 799
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	2 cut(s)	79, 91
Hpy166II	GTNNAC	1 cut(s)	918
Hpy188I	TCNGA	6 cut(s)	430, 529, 588, 687, 744, 798
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	918
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	6 cut(s)	94, 142, 180, 259, 494, 721
HpyCH4III	ACNGT	3 cut(s)	511, 553, 598
HpyCH4V	TGCA	2 cut(s)	307, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 784
HpyF3I	CTNAG	3 cut(s)	435, 587, 819
Hsp92II	CATG	3 cut(s)	580, 652, 730
Kzo9I	GATC	3 cut(s)	15, 283, 322
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	3 cut(s)	514, 632, 775
LpnPI	CCDG	8 cut(s)	385, 415, 433, 447, 577, 593, 861, 873
Lsp1109I	GCAGC	1 cut(s)	774
LweI	GCATC	1 cut(s)	294
MalI	GATC	3 cut(s)	17, 285, 324
MboI	GATC	3 cut(s)	15, 283, 322
MboII	GAAGA	5 cut(s)	288, 651, 778, 800, 829
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	6 cut(s)	148, 337, 359, 478, 681, 823
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	2 cut(s)	661, 793
MnlI	CCTC	6 cut(s)	61, 85, 427, 533, 726, 766
Mox20I	TGGCCA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	833
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	2 cut(s)	378, 762
Msp20I	TGGCCA	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	698
MwoI	GCNNNNNNNGC	2 cut(s)	30, 784
NdeII	GATC	3 cut(s)	15, 283, 322
NlaIII	CATG	3 cut(s)	580, 652, 730
NmeAIII	GCCGAG	1 cut(s)	603
NspI	RCATGY	1 cut(s)	580
PciI	ACATGT	1 cut(s)	576
PciSI	GCTCTTC	1 cut(s)	813
PctI	GAATGC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	2 cut(s)	27, 793
PkrI	GCNGC	3 cut(s)	7, 10, 789
PleI	GAGTC	2 cut(s)	660, 793
PpsI	GAGTC	2 cut(s)	660, 793
PscI	ACATGT	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	792
PstNI	CAGNNNCTG	3 cut(s)	434, 742, 796
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	2 cut(s)	378, 762
SatI	GCNGC	3 cut(s)	6, 9, 788
Sau3AI	GATC	3 cut(s)	15, 283, 322
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	2 cut(s)	661, 793
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	788
SinI	GGWCC	1 cut(s)	503
SmiI	ATTTAAAT	1 cut(s)	379
Sse9I	AATT	6 cut(s)	148, 337, 359, 478, 681, 823
SsiI	CCGC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	628
SwaI	ATTTAAAT	1 cut(s)	379
TaaI	ACNGT	3 cut(s)	511, 553, 598
TaqI	TCGA	1 cut(s)	498
TaqII	GACCGA	2 cut(s)	520, 645
TasI	AATT	6 cut(s)	148, 337, 359, 478, 681, 823
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	27, 793
Tru1I	TTAA	2 cut(s)	378, 762
Tru9I	TTAA	2 cut(s)	378, 762
TseI	GCWGC	2 cut(s)	5, 787
TspDTI	ATGAA	7 cut(s)	54, 85, 202, 414, 633, 715, 829
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	2 cut(s)	478, 823
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.