RchiOBHm_Chr1g0315521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006829
Physical Location & Seq
Reverse (-)
2630423 .. 2631437
1015 bp
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UTR
Exon/CDS
Intron
PRQ54603

Sequence Viewer

Length: 360 bp
ATGGCCAAGAACATGTATAGTCTGAGCAGGACTGTGGCTGTTCTGGGTTTGGTTCAGCTCGGCCTTGGAGCTTACATTTCATACATGACTCGGTCTTCTTCAATACCCGAAGTATCAATTCAGAGCTTTTTGGCATTCGGGTTTCCCTTCTCTTTGGCGTTCATGTTGAGGCAGTCTCTGAAGCCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGTAGGCTGCAGATTCTGACTCTTGCTCTTCAGGTTGCGAAGAATTTAAATGTTTTCTTCATTCGGGTTCGTGGGGTGTCTGTCTTGTGTATTGCTGGTTTGTCTGCTGGAGTTTTGTTCCAGCTTGCTTACAAGTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

10.24

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 200, 230
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 102
AluBI AGCT 4 cut(s) 58, 71, 126, 340
AluI AGCT 4 cut(s) 58, 71, 126, 340
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 2 cut(s) 178, 232
AoxI GGCC 2 cut(s) 3, 61
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 259
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 2 cut(s) 5, 63
BsmAI GTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 5, 63
BspANI GGCC 2 cut(s) 5, 63
BspCNI CTCAG 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 228
BspQI GCTCTTC 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 5, 63
Cac8I GCNNGC 1 cut(s) 342
CaiI CAGNNNCTG 2 cut(s) 178, 232
CviAII CATG 3 cut(s) 13, 85, 163
CviJI RGCY 9 cut(s) 5, 38, 58, 63, 71, 126, 184, 223, 340
CviKI_1 RGCY 9 cut(s) 5, 38, 58, 63, 71, 126, 184, 223, 340
DdeI CTNAG 1 cut(s) 23
DraI TTTAAA 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 200, 230
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 3 cut(s) 16, 88, 166
FaiI YATR 5 cut(s) 14, 18, 82, 86, 164
FatI CATG 3 cut(s) 12, 84, 162
Fnu4HI GCNGC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 2 cut(s) 5, 63
Hin1II CATG 3 cut(s) 16, 88, 166
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 3 cut(s) 88, 229, 235
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 4 cut(s) 24, 123, 180, 234
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 16, 88, 166
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 68, 211
LpnPI CCDG 6 cut(s) 13, 29, 233, 297, 309, 350
Lsp1109I GCAGC 1 cut(s) 210
MboII GAAGA 6 cut(s) 87, 90, 214, 236, 265, 268
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 117, 259
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 82, 229
MnlI CCTC 2 cut(s) 162, 202
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 198, 263
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 220
NlaIII CATG 3 cut(s) 16, 88, 166
NmeAIII GCCGAG 1 cut(s) 39
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 249
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 2 cut(s) 82, 229
PpsI GAGTC 2 cut(s) 82, 229
PscI ACATGT 1 cut(s) 12
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 2 cut(s) 178, 232
PsyI GACNNNGTC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 198, 263
SatI GCNGC 1 cut(s) 224
SchI GAGTC 2 cut(s) 82, 229
SetI ASST 6 cut(s) 60, 73, 128, 220, 252, 342
SfcI CTRYAG 1 cut(s) 224
SmiI ATTTAAAT 1 cut(s) 264
Sse9I AATT 2 cut(s) 117, 259
StyI CCWWGG 1 cut(s) 64
SwaI ATTTAAAT 1 cut(s) 264
TaaI ACNGT 1 cut(s) 34
TaqII GACCGA 1 cut(s) 81
TasI AATT 2 cut(s) 117, 259
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 198, 263
Tru9I TTAA 2 cut(s) 198, 263
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 69, 151, 265
Tth111I GACNNNGTC 1 cut(s) 91
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.