Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006829

Physical Location & Seq

Genomic Coordinates Reverse (-)

717924 .. 719097

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1007900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGGCCATGATCACACGCAGATTCAGCTCCAAGCTTTCAAGACTCTCTCATCCTCACTCATCACTGTCTGCTTCCTCCACCTACCTCACCGCCCAAAAGTTCCAAACCCCTGAAACCCCTAACTGCTTCACTCACTCCTCCAGTTCCACTTTCTCCCCAAATCCTTTCAAATCTTCATCAAACCCCACCATCACTATCGAACGCTACATAAAATCATCAAATCCAAAACCCATAAACCCTAATCTCATTTGGGTACCTAATTCAAAATCCATTACTCAAAACCCTGAATTCAAAAAAACAAATCTTGGTCTTACTTTTACGCAATCGTGTTTAAGTTTCAGTACCAATTTGTACAACCCTAGGTTTAATGGGTTATCAGATCAAAAGCCCAGATTTTTTTCAACCTCCTCTAGTTCATCGTCATCGGATACAGAATCTGAAAAACCCCAAAACCCTAGTGAATACCCTAGTCAAAACCCTAATTTCAAGCACCAAGAAATCGAAGGACCGACGGTGGAGCGAGACCTTTCGACTTTGGCCAATGAGACCAGAGAAGTTCTGGAATCGATGGCGAAAAACATGAATAGTCTGAGCAGGGCATTGGCTCTTCTGGGTTTGGCCCAACTCGGCGTCGGAGCTTGGATTTCGTACATTACCAAATCGACCCCAATGCCGGAGGTTTCAATTCAGAGCATTTTGGCTTTCGGGTTGCCGTTTACATTGGCCTTCATGTTGAGGCAGAGTTTGAAGCCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGCAGGCTGCAGATTCTGACTCTCACTCTTCAGATCGCTAAGAATTTGAATGTGTTCTTCGTTCGGGTTCGCGGCGTTTCGTTCTTGTGCATCGCCGGTTTGTCCGTTGGAGTCTTGTTTGCTGCCCTTACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.12

Weight (kDa)

9.83

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12650
fragaria_vesca	FvH4_7g00860 FvH4_7g00860 FvH4_7g00860
malus_domestica	MD02G1314200.v1.1 MD07G1007900.v1.1
prunus_persica	Prupe.2G010600_v2.0.a1
pyrus_communis	pycom02g26340 pycom07g00650
rosa_chinensis	RchiOBHm_Chr1g0315011 RchiOBHm_Chr1g0315191 RchiOBHm_Chr1g0315371 RchiOBHm_Chr1g0315521 RchiOBHm_Chr1g0315651
rosa_laevigata	RLG00000030740
rosa_multiflora	Rmu_sc0000576.1_g000014 Rmu_sc0000576.1_g000024 Rmu_sc0004180.1_g000014 Rmu_sc0004180.1_g000036
rosa_roxburghii	Rroxscaffold_4G00331550
rosa_rugosa	Rorug01G0004600
rosa_samantha	Rh1AG014900 Rh1AG015800 Rh1BG007700 Rh1BG008100
rosa_wichuraiana	Rw1G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	256
AccII	CGCG	1 cut(s)	858
AciI	CCGC	3 cut(s)	5, 93, 858
AcoI	YGGCCR	2 cut(s)	6, 540
AcsI	RAATTY	2 cut(s)	290, 829
AcuI	CTGAAG	1 cut(s)	800
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	4 cut(s)	258, 346, 356, 653
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	9 cut(s)	42, 172, 267, 295, 405, 490, 687, 751, 835
AluBI	AGCT	3 cut(s)	30, 37, 641
AluI	AGCT	3 cut(s)	30, 37, 641
Alw26I	GTCTC	2 cut(s)	519, 542
AlwNI	CAGNNNCTG	2 cut(s)	440, 802
AoxI	GGCC	4 cut(s)	6, 540, 621, 726
ApeKI	GCWGC	2 cut(s)	793, 908
ApoI	RAATTY	2 cut(s)	290, 829
Asp700I	GAANNNNTTC	1 cut(s)	839
Asp718I	GGTACC	1 cut(s)	256
AspA2I	CCTAGG	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	509, 622
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	509
AvrII	CCTAGG	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BbvI	GCAGC	2 cut(s)	780, 895
BccI	CCATC	3 cut(s)	200, 565, 769
BceAI	ACGGC	1 cut(s)	700
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	519, 542
BfaI	CTAG	4 cut(s)	363, 414, 459, 471
BfmI	CTRYAG	1 cut(s)	794
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	4 cut(s)	6, 794, 859, 909
BlnI	CCTAGG	1 cut(s)	362
BlsI	GCNGC	4 cut(s)	7, 795, 860, 910
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	509, 622
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	633
BsaI	GGTCTC	2 cut(s)	519, 542
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse118I	RCCGGY	1 cut(s)	881
Bse1I	ACTGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	3 cut(s)	130, 400, 794
BseXI	GCAGC	2 cut(s)	780, 895
Bsh1236I	CGCG	1 cut(s)	858
BshFI	GGCC	4 cut(s)	8, 542, 623, 728
BshNI	GGYRCC	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	677, 882
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	519, 542
BsnI	GGCC	4 cut(s)	8, 542, 623, 728
Bso31I	GGTCTC	2 cut(s)	519, 542
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	12, 382, 819
BspACI	CCGC	3 cut(s)	5, 93, 858
BspANI	GGCC	4 cut(s)	8, 542, 623, 728
BspCNI	CTCAG	1 cut(s)	585
BspDI	ATCGAT	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	858
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	798
BspQI	GCTCTTC	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	2 cut(s)	519, 542
BsrFI	RCCGGY	1 cut(s)	881
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	881
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	3 cut(s)	12, 382, 819
BssNI	GRCGYC	1 cut(s)	633
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	69, 517
Bst6I	CTCTTC	2 cut(s)	615, 819
BstACI	GRCGYC	1 cut(s)	633
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	791
BstDEI	CTNAG	2 cut(s)	593, 825
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	858
BstKTI	GATC	3 cut(s)	15, 385, 822
BstMAI	GTCTC	2 cut(s)	519, 542
BstMBI	GATC	3 cut(s)	12, 382, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 790
BstSFI	CTRYAG	1 cut(s)	794
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	2 cut(s)	780, 895
Bsu15I	ATCGAT	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	4 cut(s)	8, 542, 623, 728
BsuTUI	ATCGAT	1 cut(s)	569
BtgZI	GCGATG	1 cut(s)	862
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	791
CaiI	CAGNNNCTG	2 cut(s)	440, 802
Cfr10I	RCCGGY	1 cut(s)	881
Cfr13I	GGNCC	2 cut(s)	509, 622
ClaI	ATCGAT	1 cut(s)	569
CseI	GACGC	1 cut(s)	622
Csp6I	GTAC	4 cut(s)	257, 345, 355, 652
CviAII	CATG	3 cut(s)	10, 583, 733
CviQI	GTAC	4 cut(s)	257, 345, 355, 652
DdeI	CTNAG	2 cut(s)	593, 825
DpnI	GATC	3 cut(s)	14, 384, 821
DpnII	GATC	3 cut(s)	12, 382, 819
EaeI	YGGCCR	2 cut(s)	6, 540
Eam1104I	CTCTTC	2 cut(s)	615, 819
EarI	CTCTTC	2 cut(s)	615, 819
Eco130I	CCWWGG	1 cut(s)	362
Eco31I	GGTCTC	2 cut(s)	519, 542
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	800
EcoRI	GAATTC	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	3 cut(s)	13, 586, 736
FaiI	YATR	5 cut(s)	11, 212, 236, 584, 734
FatI	CATG	3 cut(s)	9, 582, 732
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	6, 794, 859, 909
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	6, 794, 859, 909
FspBI	CTAG	4 cut(s)	363, 414, 459, 471
GluI	GCNGC	4 cut(s)	6, 794, 859, 909
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	4 cut(s)	8, 542, 623, 728
HapII	CCGG	2 cut(s)	677, 882
HgaI	GACGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	3 cut(s)	13, 586, 736
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	7 cut(s)	24, 45, 437, 566, 799, 805, 897
HpaII	CCGG	2 cut(s)	677, 882
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	8 cut(s)	382, 430, 442, 594, 638, 693, 804, 819
Hpy188III	TCNNGA	2 cut(s)	42, 563
Hpy8I	GTNNAC	1 cut(s)	720
Hpy99I	CGWCG	2 cut(s)	517, 638
HpyAV	CCTTC	2 cut(s)	500, 739
HpyCH4III	ACNGT	2 cut(s)	69, 517
HpyCH4V	TGCA	2 cut(s)	796, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 790
HpyF3I	CTNAG	2 cut(s)	593, 825
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	3 cut(s)	13, 586, 736
KpnI	GGTACC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 382, 819
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	4 cut(s)	35, 520, 638, 781
Lsp1109I	GCAGC	2 cut(s)	780, 895
LweI	GCATC	1 cut(s)	885
MaeI	CTAG	4 cut(s)	363, 414, 459, 471
MalI	GATC	3 cut(s)	14, 384, 821
MboI	GATC	3 cut(s)	12, 382, 819
MboII	GAAGA	5 cut(s)	168, 602, 784, 806, 835
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	6 cut(s)	262, 290, 349, 484, 687, 829
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	3 cut(s)	39, 799, 906
MmeI	TCCRAC	2 cut(s)	616, 874
MnlI	CCTC	9 cut(s)	66, 88, 98, 151, 418, 421, 673, 732, 772
Mox20I	TGGCCA	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	839
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	3 cut(s)	335, 369, 768
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	2 cut(s)	677, 882
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	2 cut(s)	27, 790
NdeII	GATC	3 cut(s)	12, 382, 819
NlaIII	CATG	3 cut(s)	13, 586, 736
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	4 cut(s)	24, 437, 566, 799
PkrI	GCNGC	4 cut(s)	7, 795, 860, 910
PleI	GAGTC	3 cut(s)	39, 799, 905
PpsI	GAGTC	3 cut(s)	39, 799, 905
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	509, 622
PstI	CTGCAG	1 cut(s)	798
PstNI	CAGNNNCTG	2 cut(s)	440, 802
RsaI	GTAC	4 cut(s)	258, 346, 356, 653
RsaNI	GTAC	4 cut(s)	257, 345, 355, 652
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	335, 369, 768
SatI	GCNGC	4 cut(s)	6, 794, 859, 909
Sau3AI	GATC	3 cut(s)	12, 382, 819
Sau96I	GGNCC	2 cut(s)	509, 622
SchI	GAGTC	3 cut(s)	39, 799, 906
SfaNI	GCATC	1 cut(s)	885
SfcI	CTRYAG	1 cut(s)	794
SinI	GGWCC	1 cut(s)	509
Sse9I	AATT	6 cut(s)	262, 290, 349, 484, 687, 829
SsiI	CCGC	3 cut(s)	5, 93, 858
SspMI	CTAG	4 cut(s)	363, 414, 459, 471
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	69, 517
TaqI	TCGA	5 cut(s)	201, 504, 533, 569, 665
TaqII	GACCGA	1 cut(s)	526
TasI	AATT	6 cut(s)	262, 290, 349, 484, 687, 829
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	2 cut(s)	8, 861
TfiI	GAWTC	4 cut(s)	24, 437, 566, 799
Tru1I	TTAA	3 cut(s)	335, 369, 768
Tru9I	TTAA	3 cut(s)	335, 369, 768
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	2 cut(s)	793, 908
TspDTI	ATGAA	4 cut(s)	168, 408, 599, 721
TspGWI	ACGGA	1 cut(s)	880
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	2 cut(s)	290, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmaJI	CCTAGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	4 cut(s)	363, 414, 459, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.