Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006829

Physical Location & Seq

Genomic Coordinates Reverse (-)

961854 .. 963112

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G010600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCCGCCATGATCTCACGCAGATTCAGCTCCAAGTTTGCAAGGCTCTCTCATCCTTATTCATCATGGTCTGTATCCTCCGCCTACCTCGCCACCCAAAATCTCCAAGACTCTACGCCTAAACCCTTCACCCACTCCTCCAATTCCACTTTCTCACAAACACCCTCAAACCCCACCACCATTGTCAAAGACTACAAAACAGCACCAAATCCAAAACCCATAAACCTCAATGTCAGTTGGGTACCAACTAGAAAATCCAGTACTCAAAACCCTGAATTTATGCACCAAAGGGTTTTTGATCCACAACCCAAAAAACCCAATTTTGGTTTTACACAGTCATGTTCAAGTTTCGGTACCAATTTATGGTTATCAGATCAAAGACCCAGATTTCTTTCAACCTCTAGTTCACCACCATCAGAATCTGAAAAGCCCCAAAACCCAAGTGAATACCCTAGTCAAAACCCTGATTTCAAGCACCAAGAAATTGAAGGACCGACCGTGGAGCGAGATCTATCATCCTTGGCCAATGAGACCAGAGAAGTTCTTGAAGGGATGGCAAAGAACATGTATAATCTGAGCAGGGCATTTGCTCTTCTGGGGTTGGTCCAGCTTGGTGTTGGAGCTTGGATTTCATACATAACCAAGTCCACGCCAATTCCAGAGGTCTCAATTCAGAGCATTTTGGCATTTGGGTTGCCGATCTCATTGGCATTCATGTTGAGGCAGAGTTTGAAGCCGATCTACTTCTTTAAGAAGATGGAGGAGCAAGGTCGGTTGCAGATTTTGACACTCACTCTTCAGGTTGCTAAGAATTTGAATGTCTTCTTTGTTCGGGTTCGCGGGGTTTCTTTCTTGTGTATTGCTGGTTTGTCAGTTGGAGTCTTGTTTGCTGTGCTTACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.67

Weight (kDa)

9.82

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12650
fragaria_vesca	FvH4_7g00860 FvH4_7g00860 FvH4_7g00860
malus_domestica	MD02G1314200.v1.1 MD07G1007900.v1.1
prunus_persica	Prupe.2G010600_v2.0.a1
pyrus_communis	pycom02g26340 pycom07g00650
rosa_chinensis	RchiOBHm_Chr1g0315011 RchiOBHm_Chr1g0315191 RchiOBHm_Chr1g0315371 RchiOBHm_Chr1g0315521 RchiOBHm_Chr1g0315651
rosa_laevigata	RLG00000030740
rosa_multiflora	Rmu_sc0000576.1_g000014 Rmu_sc0000576.1_g000024 Rmu_sc0004180.1_g000014 Rmu_sc0004180.1_g000036
rosa_roxburghii	Rroxscaffold_4G00331550
rosa_rugosa	Rorug01G0004600
rosa_samantha	Rh1AG014900 Rh1AG015800 Rh1BG007700 Rh1BG008100
rosa_wichuraiana	Rw1G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	241, 353
AccB1I	GGYRCC	2 cut(s)	241, 353
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccII	CGCG	1 cut(s)	840
AciI	CCGC	3 cut(s)	6, 81, 840
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	2 cut(s)	3, 522
AcsI	RAATTY	2 cut(s)	275, 811
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	3 cut(s)	243, 262, 355
AfiI	CCNNNNNNNGG	2 cut(s)	323, 363
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	7 cut(s)	345, 396, 472, 488, 548, 733, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	3 cut(s)	30, 610, 623
AluI	AGCT	3 cut(s)	30, 610, 623
Alw26I	GTCTC	2 cut(s)	524, 670
AlwI	GGATC	1 cut(s)	293
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	3, 522
ApoI	RAATTY	2 cut(s)	275, 811
Asp700I	GAANNNNTTC	1 cut(s)	821
Asp718I	GGTACC	2 cut(s)	241, 353
AspS9I	GGNCC	2 cut(s)	491, 604
AsuHPI	GGTGA	2 cut(s)	121, 399
AvaII	GGWCC	2 cut(s)	491, 604
BalI	TGGCCA	1 cut(s)	524
BanI	GGYRCC	2 cut(s)	241, 353
BarI	GAAGNNNNNNTAC	2 cut(s)	725, 757
BbsI	GAAGAC	1 cut(s)	814
BccI	CCATC	3 cut(s)	421, 547, 751
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	524, 670
BfaI	CTAG	3 cut(s)	249, 402, 453
BfuI	GTATCC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	262
Bme18I	GGWCC	2 cut(s)	491, 604
BmgT120I	GGNCC	2 cut(s)	491, 604
BmiI	GGNNCC	2 cut(s)	243, 355
BpiI	GAAGAC	1 cut(s)	814
BsaI	GGTCTC	2 cut(s)	524, 670
BsaJI	CCNNGG	2 cut(s)	498, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 363
Bse1I	ACTGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	498, 519
BseGI	GGATG	3 cut(s)	52, 515, 558
BseLI	CCNNNNNNNGG	2 cut(s)	323, 363
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	127, 776
Bsh1236I	CGCG	1 cut(s)	840
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	5, 524
BshNI	GGYRCC	2 cut(s)	241, 353
BsiEI	CGRYCG	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	323, 363
BsmAI	GTCTC	2 cut(s)	524, 670
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	2 cut(s)	5, 524
Bso31I	GGTCTC	2 cut(s)	524, 670
Bsp143I	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
BspACI	CCGC	3 cut(s)	6, 81, 840
BspANI	GGCC	2 cut(s)	5, 524
BspCNI	CTCAG	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	840
BspLI	GGNNCC	2 cut(s)	243, 355
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	2 cut(s)	241, 353
BspTNI	GGTCTC	2 cut(s)	524, 670
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	498, 519
BssMI	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
BssT1I	CCWWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	336, 499
Bst6I	CTCTTC	2 cut(s)	597, 801
BstDEI	CTNAG	2 cut(s)	575, 807
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	3 cut(s)	52, 515, 558
BstFNI	CGCG	1 cut(s)	840
BstKTI	GATC	6 cut(s)	15, 301, 376, 511, 702, 741
BstMAI	GTCTC	2 cut(s)	524, 670
BstMBI	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 89
BstNSI	RCATGY	1 cut(s)	568
BstUI	CGCG	1 cut(s)	840
BstV2I	GAAGAC	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	5, 524
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	52, 515, 558
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	491, 604
Csp6I	GTAC	3 cut(s)	242, 261, 354
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	5 cut(s)	10, 66, 339, 565, 715
CviJI	RGCY	8 cut(s)	5, 30, 46, 430, 524, 610, 623, 736
CviKI_1	RGCY	8 cut(s)	5, 30, 46, 430, 524, 610, 623, 736
CviQI	GTAC	3 cut(s)	242, 261, 354
DdeI	CTNAG	2 cut(s)	575, 807
DpnI	GATC	6 cut(s)	14, 300, 375, 510, 701, 740
DpnII	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
EaeI	YGGCCR	2 cut(s)	3, 522
Eam1104I	CTCTTC	2 cut(s)	597, 801
EarI	CTCTTC	2 cut(s)	597, 801
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	519
Eco31I	GGTCTC	2 cut(s)	524, 670
Eco47I	GGWCC	2 cut(s)	491, 604
Eco57I	CTGAAG	1 cut(s)	782
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	5 cut(s)	13, 69, 342, 568, 718
FatI	CATG	5 cut(s)	9, 65, 338, 564, 714
FauI	CCCGC	1 cut(s)	833
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	39, 502, 565
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	249, 402, 453
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	5, 524
Hin1II	CATG	5 cut(s)	13, 69, 342, 568, 718
HinfI	GANTC	4 cut(s)	24, 110, 419, 879
HphI	GGTGA	2 cut(s)	121, 399
Hpy166II	GTNNAC	2 cut(s)	407, 648
Hpy188I	TCNGA	5 cut(s)	373, 418, 424, 576, 675
Hpy188III	TCNNGA	2 cut(s)	545, 659
Hpy8I	GTNNAC	2 cut(s)	407, 648
HpyAV	CCTTC	3 cut(s)	136, 482, 542
HpyCH4III	ACNGT	2 cut(s)	336, 499
HpyCH4V	TGCA	3 cut(s)	41, 283, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 89
HpyF3I	CTNAG	2 cut(s)	575, 807
Hsp92II	CATG	5 cut(s)	13, 69, 342, 568, 718
KpnI	GGTACC	2 cut(s)	245, 357
Kzo9I	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	4 cut(s)	35, 502, 620, 763
MaeI	CTAG	3 cut(s)	249, 402, 453
MalI	GATC	6 cut(s)	14, 300, 375, 510, 701, 740
MboI	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
MboII	GAAGA	4 cut(s)	584, 766, 788, 814
MflI	RGATCY	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	8 cut(s)	142, 275, 319, 358, 483, 654, 669, 811
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	2 cut(s)	104, 888
MmeI	TCCRAC	2 cut(s)	598, 856
MnlI	CCTC	9 cut(s)	88, 98, 148, 175, 236, 409, 655, 714, 754
Mox20I	TGGCCA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	337
Msp20I	TGGCCA	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	710
MvnI	CGCG	1 cut(s)	840
MwoI	GCNNNNNNNGC	2 cut(s)	27, 89
NdeII	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
NlaIII	CATG	5 cut(s)	13, 69, 342, 568, 718
NlaIV	GGNNCC	2 cut(s)	243, 355
NspI	RCATGY	1 cut(s)	568
PciI	ACATGT	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	1 cut(s)	710
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	2 cut(s)	24, 419
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	104, 887
PpsI	GAGTC	2 cut(s)	104, 887
PscI	ACATGT	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	243, 355
PspPI	GGNCC	2 cut(s)	491, 604
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	3 cut(s)	243, 262, 355
RsaNI	GTAC	3 cut(s)	242, 261, 354
RseI	CAYNNNNRTG	1 cut(s)	337
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	6 cut(s)	12, 298, 373, 508, 699, 738
Sau96I	GGNCC	2 cut(s)	491, 604
ScaI	AGTACT	1 cut(s)	262
SchI	GAGTC	2 cut(s)	104, 888
SetI	ASST	9 cut(s)	32, 90, 228, 401, 612, 625, 666, 772, 804
SinI	GGWCC	2 cut(s)	491, 604
SmiMI	CAYNNNNRTG	1 cut(s)	337
Sse9I	AATT	8 cut(s)	142, 275, 319, 358, 483, 654, 669, 811
SsiI	CCGC	3 cut(s)	6, 81, 840
SspMI	CTAG	3 cut(s)	249, 402, 453
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	336, 499
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	8 cut(s)	142, 275, 319, 358, 483, 654, 669, 811
TatI	WGTACW	1 cut(s)	260
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	24, 419
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TspDTI	ATGAA	3 cut(s)	51, 621, 703
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	2 cut(s)	491, 604
XapI	RAATTY	2 cut(s)	275, 811
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	3 cut(s)	249, 402, 453
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.