Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006829

Physical Location & Seq

Genomic Coordinates Reverse (-)

1314337 .. 1315466

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTGCCGCCTTGATCTCTCGCAGATTCAGACCCTCTCACTGTTCTTCATCATTCTCCTCCATATCCTCCACATACTTCATCGCCCAAAAGCTCCAAAACCCGACTCCTAAACCATTCACTCACCTGTCCAATTCCACTTTCTCACAAACACCCTCAAACCCTTTCACATCTACTTCAAACCCCAACTCCATTTTCAAAGACTACAAAAGAACAGCGCCAAATCCAAAACCCTTCAATGAAAAATCCACTAAAGCCTTAGCCTTTGATCCATCTTTGTCTTCGTCGATGCACCAAAGGGTTCTTGATCCAAAACCCAACAATTTCAATCTTGGTTTTACCCAATTGAACACTCCCAGATTTAAATGGCCGTCGGATAGTAGACCCAGATTTCTTTCAACCTCCGGTTCATCAGAACCTGAGAAACCCCAAAACCCAAGTCAGTACCCAAGTCAAAACCCAAATTTCAAGCACCAAGAAATCGAAGGACCGACTGTGGAGCGAGACCTCTCTGATTTGGGCAATGAGACCCGAACAGTCCTTGAAGTGATGGCCAAGAACATGTATAGTCTGAGCAGGACTGTGGCTGTTCTGGGTTTGGTTCAGCTCGGCCTTGGAGCTTACATTTCATACATGACTCGGTCTTCGCCAATACCCGAAGTATCAATTCAGAGCTTTTTGGCATTCGGGTTTCCCTTCTCTTTGGCGTTCATGTTGAGGCAGTCTCTGAAGCCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGTAGACTGCAGATTCTGACTCTTTCTCTTCAGGTTGCTAAGAATTTAAATGTTTTCTTCATTCGGGTTCGTGGGGTGTCTGTCTTGTGTATTGCTGGTTTGTCTGCTGGAGTTTTGTTCCAGCTTGCTTACAAGTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.79

Weight (kDa)

10.03

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12650
fragaria_vesca	FvH4_7g00860 FvH4_7g00860 FvH4_7g00860
malus_domestica	MD02G1314200.v1.1 MD07G1007900.v1.1
prunus_persica	Prupe.2G010600_v2.0.a1
pyrus_communis	pycom02g26340 pycom07g00650
rosa_chinensis	RchiOBHm_Chr1g0315011 RchiOBHm_Chr1g0315191 RchiOBHm_Chr1g0315371 RchiOBHm_Chr1g0315521 RchiOBHm_Chr1g0315651
rosa_laevigata	RLG00000030740
rosa_multiflora	Rmu_sc0000576.1_g000014 Rmu_sc0000576.1_g000024 Rmu_sc0004180.1_g000014 Rmu_sc0004180.1_g000036
rosa_roxburghii	Rroxscaffold_4G00331550
rosa_rugosa	Rorug01G0004600
rosa_samantha	Rh1AG014900 Rh1AG015800 Rh1BG007700 Rh1BG008100
rosa_wichuraiana	Rw1G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	382, 769
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	263, 302
AcoI	YGGCCR	2 cut(s)	368, 552
AcsI	RAATTY	2 cut(s)	463, 808
AcuI	CTGAAG	2 cut(s)	749, 779
AfaI	GTAC	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	8 cut(s)	180, 199, 238, 328, 349, 399, 469, 545
AjuI	GAANNNNNNNTTGG	4 cut(s)	125, 157, 179, 211
AluBI	AGCT	5 cut(s)	94, 607, 620, 675, 889
AluI	AGCT	5 cut(s)	94, 607, 620, 675, 889
Alw26I	GTCTC	3 cut(s)	498, 521, 729
AlwI	GGATC	2 cut(s)	263, 302
AlwNI	CAGNNNCTG	3 cut(s)	419, 727, 781
AoxI	GGCC	3 cut(s)	368, 552, 610
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	463, 808
ArsI	GACNNNNNNTTYG	4 cut(s)	424, 456, 628, 660
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	554
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BbsI	GAAGAC	2 cut(s)	273, 636
BccI	CCATC	3 cut(s)	280, 544, 748
BceAI	ACGGC	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	498, 521, 729
BfmI	CTRYAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	273, 636
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpmI	CTGGAG	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	259
BsaI	GGTCTC	2 cut(s)	498, 521
BsaJI	CCNNGG	1 cut(s)	613
BsaWI	WCCGGW	1 cut(s)	404
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bse3DI	GCAATG	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	613
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	411, 563
BseRI	GAGGAG	2 cut(s)	49, 773
BshFI	GGCC	3 cut(s)	370, 554, 612
BsiSI	CCGG	1 cut(s)	405
BsmAI	GTCTC	3 cut(s)	498, 521, 729
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	370, 554, 612
Bso31I	GGTCTC	2 cut(s)	498, 521
Bsp143I	GATC	3 cut(s)	15, 268, 307
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	3 cut(s)	370, 554, 612
BspCNI	CTCAG	2 cut(s)	412, 564
BspMAI	CTGCAG	1 cut(s)	777
BspPI	GGATC	2 cut(s)	263, 302
BspTNI	GGTCTC	2 cut(s)	498, 521
BsrDI	GCAATG	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	3 cut(s)	15, 268, 307
BssT1I	CCWWGG	1 cut(s)	613
Bst4CI	ACNGT	4 cut(s)	44, 496, 538, 583
Bst6I	CTCTTC	1 cut(s)	798
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	4 cut(s)	259, 420, 572, 804
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	18, 271, 310
BstMAI	GTCTC	3 cut(s)	498, 521, 729
BstMBI	GATC	3 cut(s)	15, 268, 307
BstNSI	RCATGY	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	773
BstV2I	GAAGAC	2 cut(s)	273, 636
BsuRI	GGCC	3 cut(s)	370, 554, 612
BtgZI	GCGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	891
CaiI	CAGNNNCTG	3 cut(s)	419, 727, 781
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	3 cut(s)	562, 634, 712
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	4 cut(s)	259, 420, 572, 804
DpnI	GATC	3 cut(s)	17, 270, 309
DpnII	GATC	3 cut(s)	15, 268, 307
DraI	TTTAAA	2 cut(s)	364, 813
EaeI	YGGCCR	2 cut(s)	368, 552
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	613
Eco31I	GGTCTC	2 cut(s)	498, 521
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	2 cut(s)	749, 779
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	3 cut(s)	565, 637, 715
FaiI	YATR	7 cut(s)	65, 76, 563, 567, 631, 635, 713
FatI	CATG	3 cut(s)	561, 633, 711
FblI	GTMKAC	2 cut(s)	382, 769
Fnu4HI	GCNGC	2 cut(s)	6, 9
Fsp4HI	GCNGC	2 cut(s)	6, 9
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	894
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	370, 554, 612
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	565, 637, 715
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HinfI	GANTC	5 cut(s)	27, 106, 637, 778, 784
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	383, 770, 903
Hpy188I	TCNGA	8 cut(s)	32, 376, 415, 514, 573, 672, 729, 783
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	3 cut(s)	383, 770, 903
Hpy99I	CGWCG	2 cut(s)	289, 376
HpyAV	CCTTC	3 cut(s)	244, 479, 706
HpyCH4III	ACNGT	4 cut(s)	44, 496, 538, 583
HpyCH4V	TGCA	2 cut(s)	292, 775
HpyF3I	CTNAG	4 cut(s)	259, 420, 572, 804
Hsp92II	CATG	3 cut(s)	565, 637, 715
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	15, 268, 307
LmnI	GCTCC	4 cut(s)	99, 499, 617, 760
LweI	GCATC	1 cut(s)	279
MalI	GATC	3 cut(s)	17, 270, 309
MboI	GATC	3 cut(s)	15, 268, 307
MboII	GAAGA	6 cut(s)	39, 273, 636, 763, 785, 814
MfeI	CAATTG	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	6 cut(s)	133, 322, 344, 463, 666, 808
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	3 cut(s)	100, 631, 778
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	8 cut(s)	46, 70, 79, 166, 412, 518, 711, 751
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	3 cut(s)	363, 747, 812
Msp20I	TGGCCA	1 cut(s)	554
MspI	CCGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	683
NdeII	GATC	3 cut(s)	15, 268, 307
NlaIII	CATG	3 cut(s)	565, 637, 715
NmeAIII	GCCGAG	1 cut(s)	588
NspI	RCATGY	1 cut(s)	565
PciI	ACATGT	1 cut(s)	561
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	2 cut(s)	27, 778
PflFI	GACNNNGTC	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	3 cut(s)	100, 631, 778
PpsI	GAGTC	3 cut(s)	100, 631, 778
PscI	ACATGT	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	3 cut(s)	419, 727, 781
PsyI	GACNNNGTC	1 cut(s)	640
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SaqAI	TTAA	3 cut(s)	363, 747, 812
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	15, 268, 307
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	3 cut(s)	100, 631, 778
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	773
SinI	GGWCC	1 cut(s)	488
SmiI	ATTTAAAT	2 cut(s)	364, 813
Sse9I	AATT	6 cut(s)	133, 322, 344, 463, 666, 808
SsiI	CCGC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	613
SwaI	ATTTAAAT	2 cut(s)	364, 813
TaaI	ACNGT	4 cut(s)	44, 496, 538, 583
TaqI	TCGA	2 cut(s)	287, 483
TaqII	GACCGA	2 cut(s)	505, 630
TasI	AATT	6 cut(s)	133, 322, 344, 463, 666, 808
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	27, 778
Tru1I	TTAA	3 cut(s)	363, 747, 812
Tru9I	TTAA	3 cut(s)	363, 747, 812
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	7 cut(s)	39, 70, 255, 399, 618, 700, 814
TspRI	CASTG	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	2 cut(s)	463, 808
XceI	RCATGY	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	382, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.