RchiOBHm_Chr1g0315011

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
2286366 .. 2286722
357 bp
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UTR
Exon/CDS
Intron
PRQ54556

Sequence Viewer

Length: 357 bp
ATGACCAAGAACATGTATAGTCTGAGCAGGACTGTGGCTGTTCTGGGTTTGGTTCAGCTCGGCCTTGGAGTTTACATTTCATACATGACTCGGTCTTCGCCAATACCCGAAGTATCAATTCAGAGCTTTTTGGCATTCGGGTTTCCCTTCTCTTTGGCGTTCATGTTGAGGCAGTCTCTGAAGCCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGTAGGCTGCAGATTCTGACTCTTCTTCAGGTTGCAAAGGATTTGAATGTTTTTTTCATTCGGGTTCGTGGGGTTTCTGTCTTGTGTATTGCTGGTTTGTCAGCTGGAGTTTTGTTCCAACTTGCTTACAAGTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

10.08

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 200, 227
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 3 cut(s) 58, 126, 320
AluI AGCT 3 cut(s) 58, 126, 320
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 2 cut(s) 178, 232
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 1 cut(s) 63
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 63
CaiI CAGNNNCTG 2 cut(s) 178, 232
CviAII CATG 3 cut(s) 13, 85, 163
CviJI RGCY 7 cut(s) 38, 58, 63, 126, 184, 223, 320
CviKI_1 RGCY 7 cut(s) 38, 58, 63, 126, 184, 223, 320
DdeI CTNAG 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 200, 227
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 3 cut(s) 16, 88, 166
FaiI YATR 5 cut(s) 14, 18, 82, 86, 164
FatI CATG 3 cut(s) 12, 84, 162
Fnu4HI GCNGC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 63
Hin1II CATG 3 cut(s) 16, 88, 166
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 3 cut(s) 88, 229, 235
Hpy166II GTNNAC 2 cut(s) 73, 351
Hpy188I TCNGA 4 cut(s) 24, 123, 180, 234
Hpy8I GTNNAC 2 cut(s) 73, 351
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 226, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 16, 88, 166
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 13, 29, 230, 294, 306
Lsp1109I GCAGC 1 cut(s) 210
MboII GAAGA 4 cut(s) 87, 214, 230, 233
MluCI AATT 1 cut(s) 117
MlyI GAGTC 2 cut(s) 82, 229
MnlI CCTC 2 cut(s) 162, 202
MseI TTAA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 220
NlaIII CATG 3 cut(s) 16, 88, 166
NmeAIII GCCGAG 1 cut(s) 39
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 2 cut(s) 82, 229
PpsI GAGTC 2 cut(s) 82, 229
PscI ACATGT 1 cut(s) 12
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 2 cut(s) 178, 232
PsyI GACNNNGTC 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 224
SchI GAGTC 2 cut(s) 82, 229
SetI ASST 5 cut(s) 60, 128, 220, 249, 322
SfcI CTRYAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 117
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 34
TaqII GACCGA 1 cut(s) 81
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 69, 151, 262
Tth111I GACNNNGTC 1 cut(s) 91
XceI RCATGY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.