AT3G14110

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003675
Physical Location & Seq
Reverse (-)
4676118 .. 4677689
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14110.2

Sequence Viewer

Length: 951 bp
ATGGCGGCGCTTATCCGGTGTTGCTCCTCCTTCTCTCATACTTCCGGTGGCCAACCACCGCCGCGTGACAAGTCTCGAGCTCCAGAGATTGGAAAATTTGCTACATCTATTGGCTACTCAGTAGTCAGAAAACCTGGGGATCATCCTCCTTTCTCCAAAATTATACATTCGTCTTCACAGCCTAAGGAGCGACAAGGAAAGGGAATCTTACAAACGCCATTTGCCAGTGTGGGATCTCTTGACAAGTTTTCAGCTTTTGAGGGAATTGGGAGGCTCAAATTACCGGTGATGGCAGTGTTGTTGACAAACTCCCTTCAGATGGCTACACCTCTTGAAGCTTTGGCTGCTGAGATATGTGAGCCTGAGAGCTCCATGTTCAGCATGCCTATTTTGTTGCTTGTTGCTCTTATTGGAGCCACCGTTGGAGGGTTGCTTGCTCGGCAGAGGAAAGGGGAGTTACAGAGGTTGAATGAACAACTACGACAGATTAACGCAGCTCTTAGGAGACAAGCCAAAATCGAGTCTTATGCACCAAGCTTGAGTTATGCTCCAGTGGGAGCAAGAATCCCAGATAGTGAAATCATTGTGGAACCAAAGAAACAAGAGTTGATTTCCAAGTTGAAAACAGGAAAAACCTTTCTTAGGAACCAAGAACCAGAGAAAGCTTATACAGAGTTCAAGATAGCTTTGGAACTTGCCCAGAGTCTCAAAGACCCCACCGAAGAAAAGAAGGCTGCAAGAGGCCTAGGCGCCTCGCTGCAGCGCCAAGGGAAGTATAGGGAAGCCATACAGTATCACTCCATGGTTCTAGCCATCTCAAAGAGGGAAAGTGAAGATTCTGGAATCACTGAAGCATATGGAGCTATTGCAGACTGTTATACCGAGCTGGGAGATCTCGAGAAAGCTGGAAAGTTCTATGATACGTACATTGCTCGGTTAGAGACTGACTGA

Protein Analysis

316

Amino Acids

34.59

Weight (kDa)

9.1

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 162 - 229 4.7e-10 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 749
AccB7I CCANNNNNTGG 1 cut(s) 89
AccII CGCG 1 cut(s) 64
AciI CCGC 3 cut(s) 5, 59, 62
AclWI GGATC 2 cut(s) 147, 241
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 2 cut(s) 299, 870
AcyI GRCGYC 1 cut(s) 750
AfaI GTAC 1 cut(s) 926
AfiI CCNNNNNNNGG 4 cut(s) 89, 319, 426, 642
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 4 cut(s) 335, 469, 622, 679
AjnI CCWGG 1 cut(s) 133
Alw21I GWGCWC 2 cut(s) 82, 371
Alw26I GTCTC 4 cut(s) 78, 499, 710, 935
AlwI GGATC 2 cut(s) 147, 241
Ama87I CYCGRG 2 cut(s) 75, 896
AoxI GGCC 2 cut(s) 49, 742
ApeKI GCWGC 5 cut(s) 344, 494, 734, 757, 760
ApoI RAATTY 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 283
AspA2I CCTAGG 1 cut(s) 745
AspLEI GCGC 3 cut(s) 10, 752, 765
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 2 cut(s) 75, 896
AvrII CCTAGG 1 cut(s) 745
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 2 cut(s) 82, 371
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 82, 371
BbvI GCAGC 5 cut(s) 331, 506, 721, 744, 772
BccI CCATC 3 cut(s) 283, 313, 821
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 4 cut(s) 78, 499, 710, 935
BfaI CTAG 2 cut(s) 746, 809
BfmI CTRYAG 1 cut(s) 758
BfoI RGCGCY 3 cut(s) 11, 753, 766
BglII AGATCT 1 cut(s) 892
BisI GCNGC 7 cut(s) 6, 62, 345, 495, 735, 758, 761
BlnI CCTAGG 1 cut(s) 745
BlsI GCNGC 7 cut(s) 7, 63, 346, 496, 736, 759, 762
Bme1390I CCNGG 1 cut(s) 135
BmeT110I CYCGRG 2 cut(s) 75, 896
BmiI GGNNCC 4 cut(s) 415, 591, 647, 751
BmrFI CCNGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 2 cut(s) 66, 534
BpuEI CTTGAG 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 924
BsaHI GRCGYC 1 cut(s) 750
BsaJI CCNNGG 4 cut(s) 134, 745, 766, 801
BsaWI WCCGGW 3 cut(s) 15, 44, 283
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 319, 426, 642
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 225, 551
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 927
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 4 cut(s) 134, 745, 766, 801
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 4 cut(s) 89, 319, 426, 642
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 3 cut(s) 132, 339, 354
BseNI ACTGG 2 cut(s) 225, 551
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 5 cut(s) 331, 506, 721, 744, 772
BseYI CCCAGC 1 cut(s) 886
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 51, 744
BshNI GGYRCC 1 cut(s) 749
BshTI ACCGGT 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 82, 371
BsiHKCI CYCGRG 2 cut(s) 75, 896
BsiSI CCGG 3 cut(s) 16, 45, 284
BslI CCNNNNNNNGG 4 cut(s) 89, 319, 426, 642
BsmAI GTCTC 4 cut(s) 78, 499, 710, 935
BsnI GGCC 2 cut(s) 51, 744
BsoBI CYCGRG 2 cut(s) 75, 896
Bsp1286I GDGCHC 2 cut(s) 82, 371
Bsp143I GATC 3 cut(s) 139, 233, 892
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 3 cut(s) 5, 59, 62
BspANI GGCC 2 cut(s) 51, 744
BspCNI CTCAG 3 cut(s) 131, 340, 355
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 4 cut(s) 415, 591, 647, 751
BspMAI CTGCAG 1 cut(s) 762
BspPI GGATC 2 cut(s) 147, 241
BspT107I GGYRCC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 927
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 2 cut(s) 225, 551
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 4 cut(s) 134, 745, 766, 801
BssMI GATC 3 cut(s) 139, 233, 892
BssNI GRCGYC 1 cut(s) 750
BssT1I CCWWGG 3 cut(s) 745, 766, 801
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 3 cut(s) 421, 792, 875
BstACI GRCGYC 1 cut(s) 750
BstBAI YACGTR 1 cut(s) 924
BstC8I GCNNGC 2 cut(s) 383, 435
BstDEI CTNAG 6 cut(s) 118, 183, 348, 363, 500, 641
BstDSI CCRYGG 1 cut(s) 801
BstENI CCTNNNNNAGG 1 cut(s) 640
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 3 cut(s) 11, 753, 766
BstHHI GCGC 3 cut(s) 10, 752, 765
BstKTI GATC 3 cut(s) 142, 236, 895
BstMAI GTCTC 4 cut(s) 78, 499, 710, 935
BstMBI GATC 3 cut(s) 139, 233, 892
BstMWI GCNNNNNNNGC 4 cut(s) 187, 344, 439, 860
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 758
BstSNI TACGTA 1 cut(s) 924
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 5 cut(s) 331, 506, 721, 744, 772
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 233, 892
BstYI RGATCY 2 cut(s) 233, 892
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 51, 744
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 4 cut(s) 232, 300, 558, 846
Cac8I GCNNGC 2 cut(s) 383, 435
CfoI GCGC 3 cut(s) 10, 752, 765
Cfr10I RCCGGY 1 cut(s) 283
Csp6I GTAC 1 cut(s) 925
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 3 cut(s) 373, 382, 802
CviQI GTAC 1 cut(s) 925
DdeI CTNAG 6 cut(s) 118, 183, 348, 363, 500, 641
DinI GGCGCC 1 cut(s) 751
DpnI GATC 3 cut(s) 141, 235, 894
DpnII GATC 3 cut(s) 139, 233, 892
EaeI YGGCCR 1 cut(s) 49
Ecl136II GAGCTC 2 cut(s) 80, 369
Eco105I TACGTA 1 cut(s) 924
Eco130I CCWWGG 3 cut(s) 745, 766, 801
Eco147I AGGCCT 1 cut(s) 744
Eco24I GRGCYC 2 cut(s) 82, 371
Eco53kI GAGCTC 2 cut(s) 80, 369
Eco57I CTGAAG 2 cut(s) 299, 870
Eco81I CCTNAGG 1 cut(s) 183
Eco88I CYCGRG 2 cut(s) 75, 896
EcoICRI GAGCTC 2 cut(s) 80, 369
EcoNI CCTNNNNNAGG 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 3 cut(s) 745, 766, 801
EcoT38I GRGCYC 2 cut(s) 82, 371
EgeI GGCGCC 1 cut(s) 751
EheI GGCGCC 1 cut(s) 751
ErhI CCWWGG 3 cut(s) 745, 766, 801
FaeI CATG 3 cut(s) 376, 385, 805
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 3 cut(s) 372, 381, 801
FauNDI CATATG 1 cut(s) 856
Fnu4HI GCNGC 7 cut(s) 6, 62, 345, 495, 735, 758, 761
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 2 cut(s) 82, 371
Fsp4HI GCNGC 7 cut(s) 6, 62, 345, 495, 735, 758, 761
FspBI CTAG 2 cut(s) 746, 809
GlaI GCGC 3 cut(s) 9, 751, 764
GluI GCNGC 7 cut(s) 6, 62, 345, 495, 735, 758, 761
GsaI CCCAGC 1 cut(s) 890
GsuI CTGGAG 2 cut(s) 66, 534
HaeII RGCGCY 3 cut(s) 11, 753, 766
HaeIII GGCC 2 cut(s) 51, 744
HapII CCGG 3 cut(s) 16, 45, 284
HhaI GCGC 3 cut(s) 10, 752, 765
Hin1I GRCGYC 1 cut(s) 750
Hin1II CATG 3 cut(s) 376, 385, 805
Hin6I GCGC 3 cut(s) 8, 750, 763
HinP1I GCGC 3 cut(s) 8, 750, 763
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HindIII AAGCTT 3 cut(s) 336, 535, 663
HinfI GANTC 6 cut(s) 204, 521, 564, 703, 836, 843
HpaII CCGG 3 cut(s) 16, 45, 284
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 128, 318
Hpy188III TCNNGA 8 cut(s) 75, 83, 239, 332, 679, 840, 896, 898
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 40, 323, 724
HpyCH4III ACNGT 3 cut(s) 421, 792, 875
HpyCH4IV ACGT 1 cut(s) 923
HpyCH4V TGCA 4 cut(s) 530, 737, 760, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 344, 439, 860
HpyF3I CTNAG 6 cut(s) 118, 183, 348, 363, 500, 641
HpySE526I ACGT 1 cut(s) 923
Hsp92I GRCGYC 1 cut(s) 750
Hsp92II CATG 3 cut(s) 376, 385, 805
HspAI GCGC 3 cut(s) 8, 750, 763
KasI GGCGCC 1 cut(s) 749
Kzo9I GATC 3 cut(s) 139, 233, 892
LmnI GCTCC 8 cut(s) 29, 85, 187, 374, 413, 553, 557, 860
Lsp1109I GCAGC 5 cut(s) 331, 506, 721, 744, 772
MaeI CTAG 2 cut(s) 746, 809
MaeII ACGT 1 cut(s) 923
MaeIII GTNAC 2 cut(s) 65, 456
MalI GATC 3 cut(s) 141, 235, 894
MboI GATC 3 cut(s) 139, 233, 892
MboII GAAGA 3 cut(s) 165, 734, 845
MflI RGATCY 2 cut(s) 233, 892
MhlI GDGCHC 2 cut(s) 82, 371
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 4 cut(s) 95, 159, 264, 278
MluNI TGGCCA 1 cut(s) 51
Mly113I GGCGCC 1 cut(s) 750
MlyI GAGTC 2 cut(s) 530, 712
MmeI TCCRAC 1 cut(s) 403
Mox20I TGGCCA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 51
MseI TTAA 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 51
MspI CCGG 3 cut(s) 16, 45, 284
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 4 cut(s) 187, 344, 439, 860
NarI GGCGCC 1 cut(s) 750
NcoI CCATGG 1 cut(s) 801
NdeI CATATG 1 cut(s) 856
NdeII GATC 3 cut(s) 139, 233, 892
NlaIII CATG 3 cut(s) 376, 385, 805
NlaIV GGNNCC 4 cut(s) 415, 591, 647, 751
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PaeR7I CTCGAG 2 cut(s) 75, 896
PceI AGGCCT 1 cut(s) 744
PfeI GAWTC 4 cut(s) 204, 564, 836, 843
PflMI CCANNNNNTGG 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 7 cut(s) 7, 63, 346, 496, 736, 759, 762
PleI GAGTC 2 cut(s) 529, 711
PluTI GGCGCC 1 cut(s) 753
PpsI GAGTC 2 cut(s) 529, 711
Ppu21I YACGTR 1 cut(s) 924
Psp124BI GAGCTC 2 cut(s) 82, 371
Psp6I CCWGG 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 886
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 4 cut(s) 415, 591, 647, 751
PstI CTGCAG 1 cut(s) 762
PsuI RGATCY 2 cut(s) 233, 892
RsaI GTAC 1 cut(s) 926
RsaNI GTAC 1 cut(s) 925
SacI GAGCTC 2 cut(s) 82, 371
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 7 cut(s) 6, 62, 345, 495, 735, 758, 761
Sau3AI GATC 3 cut(s) 139, 233, 892
SchI GAGTC 2 cut(s) 530, 712
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 2 cut(s) 82, 371
SfcI CTRYAG 1 cut(s) 758
SfoI GGCGCC 1 cut(s) 751
Sfr274I CTCGAG 2 cut(s) 75, 896
SlaI CTCGAG 2 cut(s) 75, 896
SmlI CTYRAG 3 cut(s) 75, 538, 896
SmoI CTYRAG 3 cut(s) 75, 538, 896
SnaBI TACGTA 1 cut(s) 924
SphI GCATGC 1 cut(s) 385
Sse9I AATT 4 cut(s) 95, 159, 264, 278
SseBI AGGCCT 1 cut(s) 744
SsiI CCGC 3 cut(s) 5, 59, 62
SspDI GGCGCC 1 cut(s) 749
SspMI CTAG 2 cut(s) 746, 809
SstI GAGCTC 2 cut(s) 82, 371
StuI AGGCCT 1 cut(s) 744
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 3 cut(s) 745, 766, 801
TaaI ACNGT 3 cut(s) 421, 792, 875
TaiI ACGT 1 cut(s) 926
TaqI TCGA 3 cut(s) 76, 519, 897
TasI AATT 4 cut(s) 95, 159, 264, 278
TauI GCSGC 2 cut(s) 8, 64
TfiI GAWTC 4 cut(s) 204, 564, 836, 843
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 4 cut(s) 232, 300, 558, 853
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 5 cut(s) 344, 494, 734, 757, 760
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 486
TspRI CASTG 4 cut(s) 232, 300, 558, 853
Van91I CCANNNNNTGG 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 640
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 385
XhoI CTCGAG 2 cut(s) 75, 896
XmaJI CCTAGG 1 cut(s) 745
XspI CTAG 2 cut(s) 746, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.