Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

13538249 .. 13540896

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1148400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCAGTGGTAGCCCGTTTCTCCTGCTGCTTCTTCACCCACCCCAAGAACTCCGGCCGATCTCCGCCGTCCGATCAAATCTCCCTCAACTCCAATCTTTCCGAACCCGGAAAGTTAGCTTCTCTTCCGTTTAAAGTCGAAAAGCTTGTTTCATCGTTTGGAAATAAATTTGATGGAGTGTGTGAGATCCACCATATGTTGCCAAACTCAAAATGTCAGGGAGACATAAAGTTGAGATTCCCAACAATGGGACTTCTTCTCGGCAATGCCTTAATGTTGACAAAGCCATTGAATGCTTTGGCAGAAACATGTGAGGCGGACAACTCTGGTTTCAGCATGCCTGTACTGCTCTTTGTTGCCCTTGTTGGGGCTACTGTTGGTGGCTTGGTTGCTCGGCAAAGGAAAGGAGAATTACAGCGAGTGAATGAACAGTTGCGTCAAATCAATCAATCTCTAAGAAGGCAAGCTAAGATTGAGTCATATGCTCCGAGTTTGAGTTATTCGCCAATTGGTGCAAAAGTACTACAAGAGAGTGAGGTGATAGTTGATCCGAGGAAGCACGATTTGATTTCTCGACTGAAATCTGGGAAGAATTTTTTGAGAAACCAAGAAACGGAGAAAGCACTCGATGAGTTTAAGACTGCGCTTGAGCTTGCCCAAAGTGTGAAGGACCCAATTGAGGAAAAGAAGGCTGCAAGAGGTTTAGGAGCCTCACTGCAAAGATTGGGCAAGTACCGAGACGCCATTAAATACCACTCTATGGTTCTGGACATCTCCAAGCGAGAAGGAGAAGACTCGGGAAACACAGAAGCTTACGGTGCAATTGCTGATTGTTATACTGAGCTTGGTGATCTTGAGCGTGCAGGGAAGTTCTACGACAATTATATTGCGAGGTTGGAGTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

303

Amino Acids

33.33

Weight (kDa)

8.62

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	232 - 296	4.6e-09	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	760
AciI	CCGC	2 cut(s)	65, 317
AclWI	GGATC	2 cut(s)	181, 542
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	167, 592
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	3 cut(s)	345, 522, 734
AfiI	CCNNNNNNNGG	7 cut(s)	247, 248, 366, 367, 613, 679, 760
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	6 cut(s)	119, 145, 467, 652, 812, 844
AluI	AGCT	6 cut(s)	119, 145, 467, 652, 812, 844
Alw26I	GTCTC	2 cut(s)	216, 732
AlwI	GGATC	2 cut(s)	181, 542
Ama87I	CYCGRG	1 cut(s)	796
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	27, 692
ApoI	RAATTY	2 cut(s)	167, 592
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	1 cut(s)	670
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	28, 550, 860
AvaI	CYCGRG	1 cut(s)	796
AvaII	GGWCC	1 cut(s)	670
BbsI	GAAGAC	1 cut(s)	798
BbvI	GCAGC	2 cut(s)	14, 679
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	216, 732
BisI	GCNGC	2 cut(s)	28, 693
BlsI	GCNGC	2 cut(s)	29, 694
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	670
BmeT110I	CYCGRG	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	2 cut(s)	672, 709
BmrFI	CCNGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	668, 875
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	7 cut(s)	247, 248, 366, 367, 613, 679, 760
Bse3DI	GCAATG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	551
BseLI	CCNNNNNNNGG	7 cut(s)	247, 248, 366, 367, 613, 679, 760
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	831
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	14, 679
BsgI	GTGCAG	1 cut(s)	882
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	796
BsiSI	CCGG	2 cut(s)	54, 108
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	7 cut(s)	247, 248, 366, 367, 613, 679, 760
BsmAI	GTCTC	2 cut(s)	216, 732
BsmBI	CGTCTC	1 cut(s)	732
BsmFI	GGGAC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	796
Bsp143I	GATC	5 cut(s)	59, 73, 186, 547, 850
BspACI	CCGC	2 cut(s)	65, 317
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	672, 709
BspPI	GGATC	2 cut(s)	181, 542
BsrDI	GCAATG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	5 cut(s)	59, 73, 186, 547, 850
BssNI	GRCGYC	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	376, 432, 818
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	741
BstC8I	GCNNGC	4 cut(s)	338, 465, 654, 861
BstDEI	CTNAG	3 cut(s)	455, 468, 840
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	5 cut(s)	62, 76, 189, 550, 853
BstMAI	GTCTC	2 cut(s)	216, 732
BstMBI	GATC	5 cut(s)	59, 73, 186, 547, 850
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 346, 818
BstNSI	RCATGY	2 cut(s)	312, 340
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	14, 679
BstV2I	GAAGAC	1 cut(s)	798
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsI	GCAGTG	2 cut(s)	12, 713
BtsIMutI	CAGTG	2 cut(s)	12, 713
Cac8I	GCNNGC	4 cut(s)	338, 465, 654, 861
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	670
CseI	GACGC	2 cut(s)	425, 749
Csp6I	GTAC	3 cut(s)	344, 521, 733
CviAII	CATG	2 cut(s)	309, 337
CviQI	GTAC	3 cut(s)	344, 521, 733
DdeI	CTNAG	3 cut(s)	455, 468, 840
DpnI	GATC	5 cut(s)	61, 75, 188, 549, 852
DpnII	GATC	5 cut(s)	59, 73, 186, 547, 850
DraI	TTTAAA	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	2 cut(s)	54, 332
EclXI	CGGCCG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	670
Eco52I	CGGCCG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	796
EcoO109I	RGGNCCY	1 cut(s)	670
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	2 cut(s)	312, 340
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	2 cut(s)	308, 336
FauNDI	CATATG	2 cut(s)	195, 481
Fnu4HI	GCNGC	2 cut(s)	28, 693
Fsp4HI	GCNGC	2 cut(s)	28, 693
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	2 cut(s)	28, 693
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	54, 108
HgaI	GACGC	2 cut(s)	425, 749
HhaI	GCGC	1 cut(s)	646
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	2 cut(s)	312, 340
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	2 cut(s)	143, 810
HinfI	GANTC	4 cut(s)	237, 476, 794, 899
HpaII	CCGG	2 cut(s)	54, 108
HphI	GGTGA	3 cut(s)	28, 550, 860
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	5 cut(s)	73, 103, 489, 552, 904
Hpy188III	TCNNGA	4 cut(s)	573, 767, 798, 854
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	4 cut(s)	453, 661, 682, 779
HpyCH4III	ACNGT	3 cut(s)	376, 432, 818
HpyCH4V	TGCA	5 cut(s)	515, 695, 718, 821, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 346, 818
HpyF3I	CTNAG	3 cut(s)	455, 468, 840
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	2 cut(s)	312, 340
HspAI	GCGC	1 cut(s)	644
Kzo9I	GATC	5 cut(s)	59, 73, 186, 547, 850
LmnI	GCTCC	2 cut(s)	490, 707
LpnPI	CCDG	9 cut(s)	37, 67, 121, 203, 312, 354, 570, 752, 849
Lsp1109I	GCAGC	2 cut(s)	14, 679
MalI	GATC	5 cut(s)	61, 75, 188, 549, 852
MboI	GATC	5 cut(s)	59, 73, 186, 547, 850
MboII	GAAGA	5 cut(s)	25, 116, 248, 601, 803
MfeI	CAATTG	3 cut(s)	507, 675, 822
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	7 cut(s)	167, 410, 507, 592, 675, 822, 880
MlyI	GAGTC	3 cut(s)	485, 788, 908
MmeI	TCCRAC	1 cut(s)	876
MnlI	CCTC	8 cut(s)	95, 307, 529, 546, 673, 692, 721, 885
MseI	TTAA	4 cut(s)	132, 272, 636, 747
MspI	CCGG	2 cut(s)	54, 108
MspR9I	CCNGG	1 cut(s)	108
MunI	CAATTG	3 cut(s)	507, 675, 822
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	3 cut(s)	11, 346, 818
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	2 cut(s)	195, 481
NdeII	GATC	5 cut(s)	59, 73, 186, 547, 850
NlaIII	CATG	2 cut(s)	312, 340
NlaIV	GGNNCC	2 cut(s)	672, 709
NmeAIII	GCCGAG	2 cut(s)	240, 373
NspI	RCATGY	2 cut(s)	312, 340
PaeI	GCATGC	1 cut(s)	340
PciI	ACATGT	1 cut(s)	308
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	2 cut(s)	29, 694
PleI	GAGTC	3 cut(s)	484, 788, 907
PpsI	GAGTC	3 cut(s)	484, 788, 907
PpuMI	RGGWCCY	1 cut(s)	670
PscI	ACATGT	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	672, 709
PspPI	GGNCC	1 cut(s)	670
PspPPI	RGGWCCY	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	3 cut(s)	345, 522, 734
RsaNI	GTAC	3 cut(s)	344, 521, 733
SaqAI	TTAA	4 cut(s)	132, 272, 636, 747
SatI	GCNGC	2 cut(s)	28, 693
Sau3AI	GATC	5 cut(s)	59, 73, 186, 547, 850
Sau96I	GGNCC	1 cut(s)	670
ScaI	AGTACT	1 cut(s)	522
SchI	GAGTC	3 cut(s)	485, 788, 908
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	9 cut(s)	121, 147, 469, 540, 654, 703, 814, 846, 896
SinI	GGWCC	1 cut(s)	670
SmlI	CTYRAG	2 cut(s)	647, 854
SmoI	CTYRAG	2 cut(s)	647, 854
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	7 cut(s)	167, 410, 507, 592, 675, 822, 880
SsiI	CCGC	2 cut(s)	65, 317
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	376, 432, 818
TaqI	TCGA	3 cut(s)	138, 574, 627
TasI	AATT	7 cut(s)	167, 410, 507, 592, 675, 822, 880
TatI	WGTACW	2 cut(s)	343, 520
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	4 cut(s)	132, 272, 636, 747
Tru9I	TTAA	4 cut(s)	132, 272, 636, 747
TscAI	CASTG	2 cut(s)	12, 720
TseI	GCWGC	2 cut(s)	27, 692
TspDTI	ATGAA	2 cut(s)	141, 441
TspGWI	ACGGA	2 cut(s)	117, 629
TspRI	CASTG	2 cut(s)	12, 720
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	670
XapI	RAATTY	2 cut(s)	167, 592
XceI	RCATGY	2 cut(s)	312, 340
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.