Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

66464913 .. 66467261

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG451000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAGCTTCTGCTCGGTAATGCCTTAATGTTCGCTACACCTTTGAATGCTTTGGCAGAAACATGTGAGGCCGACAACTCTTTTTTCAACATGCCTCTGCTACTGTCTGTTGCCCTTGTAGGGGCCACTGTTGGTGGGCTGGTTGCCCGGCAAAGGAAACGGGAATTACAACGAGTGAATGAACAGTTACGACAAATTAATGCTGCTCTGAGAAGACAAGCTAAGATTGAATCATATGCTCCCACTTTGAGTTATGCACCTAGTGGAAGAATACCAGAGAACGAGGTTATAATTGATCCAAGGAAGCATGAGTTGATTTCTCGATTGAAGGCTGGGAAAAACTTTCTGAGAAACCAAGAACCACAGAAAGCATCTACTGAGTTTAAGGCAGCTCTGGAGCTTGCTCAAAGTTTGGAGGACTCAATTGAGGAGAAGAAGGCTGCAAGGGGTCTAGGAGCCTCACTGCAACGACAGGGCCAATATCGAGATGCCATTAAGTACCATTCTATGGTTTTGGCAATCTCCGAGCGAGAAGGAGAAGACTCGGGAAACACAGAAGCTTATGGAGCAATTGCTGATTGTTATACCGAGCTTGGAGATCTTGAGAGCGCAGGGAAGTTCTATGACAATTATATTGCAAGGTTGGAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

218

Amino Acids

24.18

Weight (kDa)

5.63

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	147 - 215	5.9e-10	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	508
AclWI	GGATC	1 cut(s)	290
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	4 cut(s)	120, 121, 153, 508
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	46, 88, 230, 328
AluBI	AGCT	6 cut(s)	7, 221, 392, 400, 560, 592
AluI	AGCT	6 cut(s)	7, 221, 392, 400, 560, 592
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	3 cut(s)	69, 123, 475
ApeKI	GCWGC	3 cut(s)	203, 389, 440
AseI	ATTAAT	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	123, 475
AsuC2I	CCSGG	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	544
BbsI	GAAGAC	2 cut(s)	220, 546
BbvI	GCAGC	3 cut(s)	190, 401, 427
BcnI	CCSGG	1 cut(s)	148
BfaI	CTAG	2 cut(s)	261, 452
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	3 cut(s)	204, 390, 441
BlsI	GCNGC	3 cut(s)	205, 391, 442
Bme1390I	CCNGG	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	123, 475
BmiI	GGNNCC	2 cut(s)	124, 457
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	380, 478
BpiI	GAAGAC	2 cut(s)	220, 546
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 121, 153, 508
BseDI	CCNNGG	1 cut(s)	299
BseLI	CCNNNNNNNGG	4 cut(s)	120, 121, 153, 508
BseMII	CTCAG	3 cut(s)	200, 338, 369
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	190, 401, 427
BseYI	CCCAGC	1 cut(s)	332
BshFI	GGCC	3 cut(s)	71, 125, 477
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	4 cut(s)	120, 121, 153, 508
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	71, 125, 477
BsoBI	CYCGRG	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	295, 598
BspANI	GGCC	3 cut(s)	71, 125, 477
BspCNI	CTCAG	3 cut(s)	201, 339, 370
BspLI	GGNNCC	2 cut(s)	124, 457
BspPI	GGATC	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	2 cut(s)	295, 598
BssT1I	CCWWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	105, 130, 186
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	209, 222, 347, 378
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	2 cut(s)	298, 601
BstMBI	GATC	2 cut(s)	295, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNSI	RCATGY	2 cut(s)	66, 94
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	190, 401, 427
BstV2I	GAAGAC	2 cut(s)	220, 546
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	3 cut(s)	71, 125, 477
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	126, 461
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	123, 475
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	63, 91, 308
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	209, 222, 347, 378
DpnI	GATC	2 cut(s)	297, 600
DpnII	GATC	2 cut(s)	295, 598
DraIII	CACNNNGTG	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	3 cut(s)	66, 94, 311
FatI	CATG	3 cut(s)	62, 90, 307
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	204, 390, 441
Fsp4HI	GCNGC	3 cut(s)	204, 390, 441
FspBI	CTAG	2 cut(s)	261, 452
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	3 cut(s)	204, 390, 441
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	3 cut(s)	71, 125, 477
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	3 cut(s)	66, 94, 311
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	3 cut(s)	230, 419, 542
HpaII	CCGG	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	210, 348, 526
Hpy188III	TCNNGA	5 cut(s)	321, 395, 485, 546, 602
HpyAV	CCTTC	3 cut(s)	322, 430, 527
HpyCH4III	ACNGT	3 cut(s)	105, 130, 186
HpyCH4V	TGCA	4 cut(s)	257, 443, 466, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	4 cut(s)	209, 222, 347, 378
Hsp92II	CATG	3 cut(s)	66, 94, 311
HspAI	GCGC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	295, 598
LmnI	GCTCC	5 cut(s)	4, 244, 397, 455, 566
LpnPI	CCDG	7 cut(s)	125, 161, 288, 318, 380, 458, 597
Lsp1109I	GCAGC	3 cut(s)	190, 401, 427
LweI	GCATC	2 cut(s)	380, 478
MaeI	CTAG	2 cut(s)	261, 452
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	2 cut(s)	297, 600
MboI	GATC	2 cut(s)	295, 598
MboII	GAAGA	4 cut(s)	225, 279, 445, 551
MfeI	CAATTG	2 cut(s)	423, 570
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	6 cut(s)	164, 195, 291, 423, 570, 628
MlyI	GAGTC	2 cut(s)	413, 536
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	6 cut(s)	61, 105, 277, 409, 421, 469
MseI	TTAA	5 cut(s)	26, 198, 384, 495, 655
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	2 cut(s)	423, 570
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	148
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	2 cut(s)	295, 598
NlaIII	CATG	3 cut(s)	66, 94, 311
NlaIV	GGNNCC	2 cut(s)	124, 457
NspI	RCATGY	2 cut(s)	66, 94
PciI	ACATGT	1 cut(s)	62
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	3 cut(s)	205, 391, 442
PleI	GAGTC	2 cut(s)	413, 536
PpsI	GAGTC	2 cut(s)	413, 536
PscI	ACATGT	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	124, 457
PspPI	GGNCC	2 cut(s)	123, 475
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SaqAI	TTAA	5 cut(s)	26, 198, 384, 495, 655
SatI	GCNGC	3 cut(s)	204, 390, 441
Sau3AI	GATC	2 cut(s)	295, 598
Sau96I	GGNCC	2 cut(s)	123, 475
SchI	GAGTC	2 cut(s)	413, 536
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	380, 478
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	6 cut(s)	164, 195, 291, 423, 570, 628
SspMI	CTAG	2 cut(s)	261, 452
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	3 cut(s)	105, 130, 186
TaqI	TCGA	2 cut(s)	322, 484
TasI	AATT	6 cut(s)	164, 195, 291, 423, 570, 628
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	5 cut(s)	26, 198, 384, 495, 655
Tru9I	TTAA	5 cut(s)	26, 198, 384, 495, 655
TscAI	CASTG	2 cut(s)	133, 468
TseI	GCWGC	3 cut(s)	203, 389, 440
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	133, 468
Van91I	CCANNNNNTGG	1 cut(s)	508
VspI	ATTAAT	1 cut(s)	198
XceI	RCATGY	2 cut(s)	66, 94
XspI	CTAG	2 cut(s)	261, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.