Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338597.1

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 984

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338597.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 322 bp

atggcagtggtagctcgtttctcttgcttcttcactcaccccaagacctccgcccgatctccaccctccgatcaattctccctcaagtccaccctcctcgaaccatggaagtcggcgtttcttccatttaaagtcgaagcgtttggagagaatcaaattgaggtgttggagatgtcgccggccacaaaatgtcagggagctacagaattgagattcccagcaatggagcttctgctcggaaatgccttaatgttcactgcacctttgaatgctttggcagaaacatgtgaggccgacaactcttttttcaacatgcctctgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

107

Amino Acids

11.82

Weight (kDa)

5.03

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	268, 310
AluBI	AGCT	3 cut(s)	14, 200, 229
AluI	AGCT	3 cut(s)	14, 200, 229
AoxI	GGCC	2 cut(s)	180, 291
AsuHPI	GGTGA	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	182, 293
BsiSI	CCGG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	182, 293
Bsp143I	GATC	2 cut(s)	56, 70
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	182, 293
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	2 cut(s)	56, 70
BssT1I	CCWWGG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	104
BstKTI	GATC	2 cut(s)	59, 73
BstMBI	GATC	2 cut(s)	56, 70
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	288, 316
BstSFI	CTRYAG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	182, 293
BtgI	CCRYGG	1 cut(s)	104
BtsI	GCAGTG	2 cut(s)	12, 255
BtsIMutI	CAGTG	2 cut(s)	12, 255
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	178
CviAII	CATG	3 cut(s)	105, 285, 313
CviJI	RGCY	5 cut(s)	14, 182, 200, 229, 293
CviKI_1	RGCY	5 cut(s)	14, 182, 200, 229, 293
DpnI	GATC	2 cut(s)	58, 72
DpnII	GATC	2 cut(s)	56, 70
DraI	TTTAAA	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	3 cut(s)	108, 288, 316
FaiI	YATR	3 cut(s)	106, 286, 314
FatI	CATG	3 cut(s)	104, 284, 312
GsaI	CCCAGC	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	182, 293
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	3 cut(s)	108, 288, 316
HinfI	GANTC	2 cut(s)	151, 213
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	90, 255
Hpy188I	TCNGA	2 cut(s)	70, 239
Hpy8I	GTNNAC	2 cut(s)	90, 255
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	108, 288, 316
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	56, 70
LmnI	GCTCC	2 cut(s)	197, 226
LpnPI	CCDG	3 cut(s)	179, 192, 231
MalI	GATC	2 cut(s)	58, 72
MboI	GATC	2 cut(s)	56, 70
MboII	GAAGA	2 cut(s)	22, 113
MluCI	AATT	3 cut(s)	74, 156, 206
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	58, 76, 92, 104, 107, 154, 283
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	2 cut(s)	129, 248
MspI	CCGG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	11
NaeI	GCCGGC	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	56, 70
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	3 cut(s)	108, 288, 316
NspI	RCATGY	2 cut(s)	288, 316
PciI	ACATGT	1 cut(s)	284
PctI	GAATGC	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	151, 213
PscI	ACATGT	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	129, 248
Sau3AI	GATC	2 cut(s)	56, 70
SetI	ASST	6 cut(s)	16, 50, 165, 202, 231, 265
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	74, 156, 206
SsiI	CCGC	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	104
TaqI	TCGA	2 cut(s)	99, 135
TasI	AATT	3 cut(s)	74, 156, 206
TfiI	GAWTC	2 cut(s)	151, 213
Tru1I	TTAA	2 cut(s)	129, 248
Tru9I	TTAA	2 cut(s)	129, 248
TscAI	CASTG	2 cut(s)	12, 262
TspRI	CASTG	2 cut(s)	12, 262
XceI	RCATGY	2 cut(s)	288, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.