Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002054.1

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Forward (+)

3510 .. 5797

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002054.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggcacgagtggtattttatccaaaaccgtggtcacttgacttgatcaaacattctctttatatcgaaaatcccaccgtttacgccaaacgtttatccgaagcagcagcagcagcaatggcagtggtagctcgtttctcttgcttcttcactcaccccaagacctccgcccgatctccaccctccgatcaattctccctcaagtccaccctcctcgaaccatggaagtcggcgtttcttccatttaaagtcgaagcgtttggagagaatcaaattgaggtgttggagatgtcgccggccacaaaatgtcagggagctacagaattgagattcccagcaatggagcttctgctcggaaatgccttaatgttcactgcacctttgaatgctttggcagaaacatgtgaggccgacaactcttttttcaacatgcctctgctactgtctgttgcccttgtaggggccactgttggagggctggttgcccggcaaaggaaaggggaattacaacgagtgaacgaacagttacgacaaattaatgctgctctgagaagacaagctaagatcgaatcatatgctcccactttgagttatgcacctagtggaagaataccagagagcgaggttataattgatccaaggaagcatgagttgatttctcgattgaaggctgggaaaaactttctgagaaaccaagaaccacagaaagcatctactgagtttaaggcagctctggagcttgctcaaagtttggaggactcaattgaggagaagaaggctgcaaggggtctaggagcctcactgcaacgacagggccaatatcgagatgccattaagtaccattctatggttttggcaatctctgagcgagaaggagaagactcgggaaacacagaagcttatggagcaattgctgattgttataccgagcttggagatcttgagagcgcagggaagttctatgacaattatattgcaaggttggagaaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

331

Amino Acids

36.68

Weight (kDa)

6.49

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AccB7I	CCANNNNNTGG	1 cut(s)	847
AciI	CCGC	1 cut(s)	168
AclI	AACGTT	1 cut(s)	91
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	1 cut(s)	297
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	1 cut(s)	839
AfiI	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	385, 427, 667
AluBI	AGCT	8 cut(s)	131, 317, 346, 560, 731, 739, 899, 931
AluI	AGCT	8 cut(s)	131, 317, 346, 560, 731, 739, 899, 931
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	883
AoxI	GGCC	4 cut(s)	297, 408, 462, 814
ApeKI	GCWGC	7 cut(s)	104, 107, 110, 113, 542, 728, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	950
AspS9I	GGNCC	2 cut(s)	462, 814
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	883
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	2 cut(s)	559, 885
BbvI	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	487
BfaI	CTAG	2 cut(s)	600, 791
BfmI	CTRYAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
BlsI	GCNGC	7 cut(s)	106, 109, 112, 115, 544, 730, 781
Bme1390I	CCNGG	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	883
BmgT120I	GGNCC	2 cut(s)	462, 814
BmiI	GGNNCC	2 cut(s)	463, 796
BmrFI	CCNGG	1 cut(s)	487
BmsI	GCATC	2 cut(s)	719, 817
BpiI	GAAGAC	2 cut(s)	559, 885
BpmI	CTGGAG	1 cut(s)	755
BpuEI	CTTGAG	2 cut(s)	185, 962
BpuMI	CCSGG	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	29, 221, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
Bse118I	RCCGGY	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	123, 345
BseDI	CCNNGG	3 cut(s)	29, 221, 638
BseLI	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
BseMI	GCAATG	2 cut(s)	123, 345
BseMII	CTCAG	4 cut(s)	539, 677, 708, 855
BseRI	GAGGAG	2 cut(s)	203, 782
BseXI	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
BseYI	CCCAGC	2 cut(s)	334, 671
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	4 cut(s)	299, 410, 464, 816
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	2 cut(s)	296, 487
BslI	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	4 cut(s)	299, 410, 464, 816
BsoBI	CYCGRG	1 cut(s)	883
Bsp143I	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	4 cut(s)	299, 410, 464, 816
BspCNI	CTCAG	4 cut(s)	540, 678, 709, 856
BspLI	GGNNCC	2 cut(s)	463, 796
BspPI	GGATC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	123, 345
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	29, 221, 638
BssMI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	221, 638
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	5 cut(s)	30, 79, 444, 469, 525
BstC8I	GCNNGC	2 cut(s)	297, 741
BstDEI	CTNAG	5 cut(s)	548, 561, 686, 717, 864
BstDSI	CCRYGG	2 cut(s)	29, 221
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	6 cut(s)	48, 176, 190, 567, 637, 940
BstMBI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 113, 119, 128, 905
BstNSI	RCATGY	2 cut(s)	405, 433
BstSCI	CCNGG	1 cut(s)	485
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
BstV2I	GAAGAC	2 cut(s)	559, 885
BstX2I	RGATCY	1 cut(s)	937
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	4 cut(s)	299, 410, 464, 816
BtgI	CCRYGG	2 cut(s)	29, 221
BtsI	GCAGTG	3 cut(s)	129, 372, 800
BtsIMutI	CAGTG	4 cut(s)	129, 372, 465, 800
Cac8I	GCNNGC	2 cut(s)	297, 741
CfoI	GCGC	1 cut(s)	950
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	462, 814
Csp6I	GTAC	1 cut(s)	838
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	4 cut(s)	222, 402, 430, 647
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	5 cut(s)	548, 561, 686, 717, 864
DpnI	GATC	6 cut(s)	47, 175, 189, 566, 636, 939
DpnII	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
DraI	TTTAAA	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	221, 638
Eco88I	CYCGRG	1 cut(s)	883
EcoT14I	CCWWGG	2 cut(s)	221, 638
ErhI	CCWWGG	2 cut(s)	221, 638
FaeI	CATG	4 cut(s)	225, 405, 433, 650
FatI	CATG	4 cut(s)	221, 401, 429, 646
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
Fsp4HI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
FspBI	CTAG	2 cut(s)	600, 791
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
GsaI	CCCAGC	2 cut(s)	338, 675
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	4 cut(s)	299, 410, 464, 816
HapII	CCGG	2 cut(s)	296, 487
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	4 cut(s)	225, 405, 433, 650
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HindIII	AAGCTT	1 cut(s)	897
HinfI	GANTC	5 cut(s)	268, 330, 569, 758, 881
HpaII	CCGG	2 cut(s)	296, 487
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	4 cut(s)	82, 207, 372, 517
Hpy188I	TCNGA	6 cut(s)	100, 187, 356, 549, 687, 865
Hpy188III	TCNNGA	5 cut(s)	660, 734, 824, 885, 941
Hpy8I	GTNNAC	4 cut(s)	82, 207, 372, 517
HpyAV	CCTTC	3 cut(s)	661, 769, 866
HpyCH4III	ACNGT	5 cut(s)	30, 79, 444, 469, 525
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	377, 596, 782, 805, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 113, 119, 128, 905
HpyF3I	CTNAG	5 cut(s)	548, 561, 686, 717, 864
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	4 cut(s)	225, 405, 433, 650
HspAI	GCGC	1 cut(s)	948
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
LmnI	GCTCC	6 cut(s)	314, 343, 583, 736, 794, 905
Lsp1109I	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
LweI	GCATC	2 cut(s)	719, 817
MaeI	CTAG	2 cut(s)	600, 791
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	33, 525
MalI	GATC	6 cut(s)	47, 175, 189, 566, 636, 939
MboI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
MboII	GAAGA	6 cut(s)	139, 230, 564, 618, 784, 890
MfeI	CAATTG	2 cut(s)	762, 909
MflI	RGATCY	1 cut(s)	937
MluCI	AATT	9 cut(s)	191, 273, 323, 503, 534, 630, 762, 909, 967
MlyI	GAGTC	2 cut(s)	752, 875
MmeI	TCCRAC	3 cut(s)	264, 451, 963
MroNI	GCCGGC	1 cut(s)	295
MseI	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
MspI	CCGG	2 cut(s)	296, 487
MspR9I	CCNGG	1 cut(s)	487
MunI	CAATTG	2 cut(s)	762, 909
Mva1269I	GAATGC	1 cut(s)	391
MwoI	GCNNNNNNNGC	5 cut(s)	110, 113, 119, 128, 905
NaeI	GCCGGC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	487
NcoI	CCATGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
NgoMIV	GCCGGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	225, 405, 433, 650
NlaIV	GGNNCC	2 cut(s)	463, 796
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	2 cut(s)	405, 433
PciI	ACATGT	1 cut(s)	401
PctI	GAATGC	1 cut(s)	391
PdiI	GCCGGC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	268, 330, 569
PflMI	CCANNNNNTGG	1 cut(s)	847
PkrI	GCNGC	7 cut(s)	106, 109, 112, 115, 544, 730, 781
PleI	GAGTC	2 cut(s)	752, 875
PpsI	GAGTC	2 cut(s)	752, 875
PscI	ACATGT	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	629
Psp1406I	AACGTT	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	334, 671
PspN4I	GGNNCC	2 cut(s)	463, 796
PspPI	GGNCC	2 cut(s)	462, 814
PsuI	RGATCY	1 cut(s)	937
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
SaqAI	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
SatI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
Sau3AI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
Sau96I	GGNCC	2 cut(s)	462, 814
SchI	GAGTC	2 cut(s)	752, 875
ScrFI	CCNGG	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	719, 817
SfcI	CTRYAG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	200, 941
SmoI	CTYRAG	2 cut(s)	200, 941
Sse9I	AATT	9 cut(s)	191, 273, 323, 503, 534, 630, 762, 909, 967
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	600, 791
StyD4I	CCNGG	1 cut(s)	485
StyI	CCWWGG	2 cut(s)	221, 638
TaaI	ACNGT	5 cut(s)	30, 79, 444, 469, 525
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	6 cut(s)	66, 216, 252, 567, 661, 823
TasI	AATT	9 cut(s)	191, 273, 323, 503, 534, 630, 762, 909, 967
TfiI	GAWTC	3 cut(s)	268, 330, 569
Tru1I	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
Tru9I	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
TscAI	CASTG	4 cut(s)	129, 379, 472, 807
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	7 cut(s)	104, 107, 110, 113, 542, 728, 779
Tsp45I	GTSAC	1 cut(s)	33
TspRI	CASTG	4 cut(s)	129, 379, 472, 807
Van91I	CCANNNNNTGG	1 cut(s)	847
VspI	ATTAAT	1 cut(s)	537
XceI	RCATGY	2 cut(s)	405, 433
XspI	CTAG	2 cut(s)	600, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.