Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Forward (+)

21976547 .. 21979076

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCAGTGGTAGCTCGTTTCTCTTGCTTCTTCACTCACCCCAAGACCTCCGCCCGATCTCCACCCTCCGATCAATTCTCCCTCAAGTCCACCCTCCTCGAACCATGGAAGTCGGCGTTTCTTCCATTTAAAGTCGAAGCATTTGGAGAGAATCAAATTGAAGTGTTGGAGATGTCGCCGGCCACAAAATGTCAGGGAGCTACAGAATTGAGATTCCCAGCAATGGAGCTTCTCCTCGGTAATGCCTTAATGTTCACTACACCTTTGAATGCTTTGGCAGAAACATGTGAGGCCGACAACTCTTTTTTCAACATGCCTCTGCTACTGTCTGTTGCCCTTGTAGGGGCCACTGTTGGTGGGCTGGTTGCCCGGCAAAGGAAAGGGGAATTACAACGAGTGAACGAACAGTTACGACAAATTAATGCTGCTCTGAGAAGACAAGCTAAGATCGAATCATATGCTCCCACTTTGAGTTATGCACCTAGTGGAAGAATACCAGAGAGCGAGGTTATAATTGATCCAAAGAAGCATGAGTTGATTTCTCGATTGAAGGCTGGGAAAAACTTTCTGAGAAACCAAGAACCACAGAAAGCATCTACCGAGTTTAAGGCAGCTCTGGAGCTTGCTCAAGGTTTGAAGGACTCAATTGAGGAGAAGAAGGCTGCAAGGGGTCTAGGAGCCTCACTACAAAGACAGGGCCAATATCGAGATGCCATTAAGTACCATTCTATGGTTTTGGCAATCTCCGAGCGAGAAGGAGAAGACTCGGGAAACACAGAAGCTTATGGAGCAATTGCTGATTGTTATACCGAGCTTGGAGATCTAGAGAGCGCAGGGAAGTTCTATGACAATTATATTGCAAGGTTGGAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

292

Amino Acids

32.24

Weight (kDa)

6.39

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	188 - 249	4.5e-07	Tetratricopeptide repeat
TPR_12	PF13424	221 - 288	9.7e-10	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	730
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	5 cut(s)	223, 342, 343, 375, 730
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	5 cut(s)	161, 268, 310, 550, 637
AluBI	AGCT	8 cut(s)	14, 200, 229, 443, 614, 622, 782, 814
AluI	AGCT	8 cut(s)	14, 200, 229, 443, 614, 622, 782, 814
AlwI	GGATC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	766
AoxI	GGCC	4 cut(s)	180, 291, 345, 697
ApeKI	GCWGC	3 cut(s)	425, 611, 662
AseI	ATTAAT	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	833
AspS9I	GGNCC	2 cut(s)	345, 697
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	766
BbsI	GAAGAC	2 cut(s)	442, 768
BbvI	GCAGC	3 cut(s)	412, 623, 649
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BcnI	CCSGG	1 cut(s)	370
BfaI	CTAG	3 cut(s)	483, 674, 824
BfmI	CTRYAG	1 cut(s)	201
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	3 cut(s)	426, 612, 663
BlsI	GCNGC	3 cut(s)	427, 613, 664
Bme1390I	CCNGG	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	345, 697
BmiI	GGNNCC	2 cut(s)	346, 679
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	602, 700
BpiI	GAAGAC	2 cut(s)	442, 768
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	2 cut(s)	68, 612
BpuMI	CCSGG	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	104, 235
Bsc4I	CCNNNNNNNGG	5 cut(s)	223, 342, 343, 375, 730
Bse118I	RCCGGY	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	104, 235
BseLI	CCNNNNNNNGG	5 cut(s)	223, 342, 343, 375, 730
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	422, 560
BseRI	GAGGAG	3 cut(s)	86, 224, 665
BseXI	GCAGC	3 cut(s)	412, 623, 649
BseYI	CCCAGC	2 cut(s)	217, 554
BshFI	GGCC	4 cut(s)	182, 293, 347, 699
BsiHKCI	CYCGRG	1 cut(s)	766
BsiSI	CCGG	2 cut(s)	179, 370
BslI	CCNNNNNNNGG	5 cut(s)	223, 342, 343, 375, 730
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	4 cut(s)	182, 293, 347, 699
BsoBI	CYCGRG	1 cut(s)	766
Bsp143I	GATC	5 cut(s)	56, 70, 447, 517, 820
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	4 cut(s)	182, 293, 347, 699
BspCNI	CTCAG	2 cut(s)	423, 561
BspLI	GGNNCC	2 cut(s)	346, 679
BspPI	GGATC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	104, 235
BssMI	GATC	5 cut(s)	56, 70, 447, 517, 820
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	3 cut(s)	327, 352, 408
BstC8I	GCNNGC	2 cut(s)	180, 624
BstDEI	CTNAG	3 cut(s)	431, 444, 569
BstDSI	CCRYGG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	833
BstKTI	GATC	5 cut(s)	59, 73, 450, 520, 823
BstMBI	GATC	5 cut(s)	56, 70, 447, 517, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 788
BstNSI	RCATGY	2 cut(s)	288, 316
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	412, 623, 649
BstV2I	GAAGAC	2 cut(s)	442, 768
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	4 cut(s)	182, 293, 347, 699
BtgI	CCRYGG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 348
Cac8I	GCNNGC	2 cut(s)	180, 624
CfoI	GCGC	1 cut(s)	833
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	345, 697
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	4 cut(s)	105, 285, 313, 530
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	3 cut(s)	431, 444, 569
DpnI	GATC	5 cut(s)	58, 72, 449, 519, 822
DpnII	GATC	5 cut(s)	56, 70, 447, 517, 820
DraI	TTTAAA	1 cut(s)	130
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	4 cut(s)	108, 288, 316, 533
FatI	CATG	4 cut(s)	104, 284, 312, 529
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	426, 612, 663
Fsp4HI	GCNGC	3 cut(s)	426, 612, 663
FspBI	CTAG	3 cut(s)	483, 674, 824
GlaI	GCGC	1 cut(s)	832
GluI	GCNGC	3 cut(s)	426, 612, 663
GsaI	CCCAGC	2 cut(s)	221, 558
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	4 cut(s)	182, 293, 347, 699
HapII	CCGG	2 cut(s)	179, 370
HhaI	GCGC	1 cut(s)	833
Hin1II	CATG	4 cut(s)	108, 288, 316, 533
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	5 cut(s)	151, 213, 452, 641, 764
HpaII	CCGG	2 cut(s)	179, 370
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	90, 255, 400
Hpy188I	TCNGA	4 cut(s)	70, 432, 570, 748
Hpy188III	TCNNGA	5 cut(s)	543, 617, 707, 768, 824
Hpy8I	GTNNAC	3 cut(s)	90, 255, 400
HpyAV	CCTTC	4 cut(s)	544, 631, 652, 749
HpyCH4III	ACNGT	3 cut(s)	327, 352, 408
HpyCH4V	TGCA	3 cut(s)	479, 665, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 788
HpyF3I	CTNAG	3 cut(s)	431, 444, 569
Hsp92II	CATG	4 cut(s)	108, 288, 316, 533
HspAI	GCGC	1 cut(s)	831
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	56, 70, 447, 517, 820
LmnI	GCTCC	6 cut(s)	197, 226, 466, 619, 677, 788
Lsp1109I	GCAGC	3 cut(s)	412, 623, 649
LweI	GCATC	2 cut(s)	602, 700
MaeI	CTAG	3 cut(s)	483, 674, 824
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	5 cut(s)	58, 72, 449, 519, 822
MboI	GATC	5 cut(s)	56, 70, 447, 517, 820
MboII	GAAGA	6 cut(s)	22, 113, 447, 501, 667, 773
MfeI	CAATTG	2 cut(s)	645, 792
MflI	RGATCY	1 cut(s)	820
MluCI	AATT	9 cut(s)	74, 156, 206, 386, 417, 513, 645, 792, 850
MlyI	GAGTC	2 cut(s)	635, 758
MmeI	TCCRAC	2 cut(s)	147, 846
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	6 cut(s)	129, 248, 420, 606, 717, 877
MspI	CCGG	2 cut(s)	179, 370
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	2 cut(s)	645, 792
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	11, 788
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	104
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	5 cut(s)	56, 70, 447, 517, 820
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	108, 288, 316, 533
NlaIV	GGNNCC	2 cut(s)	346, 679
NspI	RCATGY	2 cut(s)	288, 316
PciI	ACATGT	1 cut(s)	284
PctI	GAATGC	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	151, 213, 452
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	3 cut(s)	427, 613, 664
PleI	GAGTC	2 cut(s)	635, 758
PpsI	GAGTC	2 cut(s)	635, 758
PscI	ACATGT	1 cut(s)	284
PshBI	ATTAAT	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	512
PspFI	CCCAGC	2 cut(s)	217, 554
PspN4I	GGNNCC	2 cut(s)	346, 679
PspPI	GGNCC	2 cut(s)	345, 697
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SaqAI	TTAA	6 cut(s)	129, 248, 420, 606, 717, 877
SatI	GCNGC	3 cut(s)	426, 612, 663
Sau3AI	GATC	5 cut(s)	56, 70, 447, 517, 820
Sau96I	GGNCC	2 cut(s)	345, 697
SchI	GAGTC	2 cut(s)	635, 758
ScrFI	CCNGG	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	602, 700
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	83, 627
SmoI	CTYRAG	2 cut(s)	83, 627
Sse9I	AATT	9 cut(s)	74, 156, 206, 386, 417, 513, 645, 792, 850
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	3 cut(s)	483, 674, 824
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	327, 352, 408
TaqI	TCGA	5 cut(s)	99, 135, 450, 544, 706
TasI	AATT	9 cut(s)	74, 156, 206, 386, 417, 513, 645, 792, 850
TfiI	GAWTC	3 cut(s)	151, 213, 452
Tru1I	TTAA	6 cut(s)	129, 248, 420, 606, 717, 877
Tru9I	TTAA	6 cut(s)	129, 248, 420, 606, 717, 877
TscAI	CASTG	2 cut(s)	12, 355
TseI	GCWGC	3 cut(s)	425, 611, 662
TspRI	CASTG	2 cut(s)	12, 355
Van91I	CCANNNNNTGG	1 cut(s)	730
VspI	ATTAAT	1 cut(s)	420
XbaI	TCTAGA	1 cut(s)	823
XceI	RCATGY	2 cut(s)	288, 316
XspI	CTAG	3 cut(s)	483, 674, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.