Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001986.1

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

2748 .. 4595

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001986.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgtgcatctgtcgctgtgattattattggataactgttaacatgagtaatgccaagaacctgaagggttggatttatgcaatatctgttctgtcggatctcgaagcgtttggagagaatcaaattgaggtgttggagatgtcgccggccacaaaatgtcagggagctacagaattgagattcccagcaatggagcttctgctcggaaatgccttaatgttcactgcacctttgaatgctttggcagaaacatgtgaggccgacaactcttttttcaacatgcctctgctactgtctgttgcccttgtaggggccactgttggagggctggttgcccggcaaaggaaaggggaattacaacgagtgaacgaacagttacgacaaattaatgctgctctgagaagacaagctaagatcgaatcatatgctcccactttgagttatgcacctagtggaagaataccagagagcgaggttataattgatccaaggaagcatgagttgatttctcgattgaaggctgggaaaaactttctgagaaaccaagaaccacagaaagcatctactgagtttaaggcagctctggagcttgctcaaagtttggaggactcaattgaggagaagaaggctgcaaggggtctaggagcctcactgcaacgacagggccaatatcgagatgccattaagtaccattctatggttttggcaatctctgagcgagaaggagaagactcgggaaacacagaagcttatggagcaattgctgattgttataccgagcttggagatcttgagagcgcagggaagttctatgacaattatattgcaaggttggagaaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

281

Amino Acids

31.17

Weight (kDa)

5.27

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AccB7I	CCANNNNNTGG	1 cut(s)	697
AclWI	GGATC	2 cut(s)	105, 479
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	5 cut(s)	190, 309, 310, 342, 697
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	235, 277, 517
AluBI	AGCT	7 cut(s)	167, 196, 410, 581, 589, 749, 781
AluI	AGCT	7 cut(s)	167, 196, 410, 581, 589, 749, 781
AlwI	GGATC	2 cut(s)	105, 479
Ama87I	CYCGRG	1 cut(s)	733
AoxI	GGCC	4 cut(s)	147, 258, 312, 664
ApeKI	GCWGC	3 cut(s)	392, 578, 629
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	2 cut(s)	312, 664
AsuC2I	CCSGG	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	733
BbsI	GAAGAC	2 cut(s)	409, 735
BbvI	GCAGC	3 cut(s)	379, 590, 616
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BcnI	CCSGG	1 cut(s)	337
BfaI	CTAG	2 cut(s)	450, 641
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	3 cut(s)	393, 579, 630
BlsI	GCNGC	3 cut(s)	394, 580, 631
Bme1390I	CCNGG	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	2 cut(s)	312, 664
BmiI	GGNNCC	2 cut(s)	313, 646
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	15, 569, 667
BpiI	GAAGAC	2 cut(s)	409, 735
BpmI	CTGGAG	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	5 cut(s)	190, 309, 310, 342, 697
Bse118I	RCCGGY	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	488
BseLI	CCNNNNNNNGG	5 cut(s)	190, 309, 310, 342, 697
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	4 cut(s)	389, 527, 558, 705
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	379, 590, 616
BseYI	CCCAGC	2 cut(s)	184, 521
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	149, 260, 314, 666
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	146, 337
BslI	CCNNNNNNNGG	5 cut(s)	190, 309, 310, 342, 697
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	149, 260, 314, 666
BsoBI	CYCGRG	1 cut(s)	733
Bsp143I	GATC	4 cut(s)	97, 414, 484, 787
BspANI	GGCC	4 cut(s)	149, 260, 314, 666
BspCNI	CTCAG	4 cut(s)	390, 528, 559, 706
BspLI	GGNNCC	2 cut(s)	313, 646
BspPI	GGATC	2 cut(s)	105, 479
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	4 cut(s)	97, 414, 484, 787
BssT1I	CCWWGG	1 cut(s)	488
Bst4CI	ACNGT	4 cut(s)	37, 294, 319, 375
BstC8I	GCNNGC	2 cut(s)	147, 591
BstDEI	CTNAG	5 cut(s)	398, 411, 536, 567, 714
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	4 cut(s)	100, 417, 487, 790
BstMBI	GATC	4 cut(s)	97, 414, 484, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 755
BstNSI	RCATGY	2 cut(s)	255, 283
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	379, 590, 616
BstV2I	GAAGAC	2 cut(s)	409, 735
BstX2I	RGATCY	2 cut(s)	97, 787
BstYI	RGATCY	2 cut(s)	97, 787
BsuRI	GGCC	4 cut(s)	149, 260, 314, 666
BtsI	GCAGTG	2 cut(s)	222, 650
BtsIMutI	CAGTG	3 cut(s)	222, 315, 650
Cac8I	GCNNGC	2 cut(s)	147, 591
CfoI	GCGC	1 cut(s)	800
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	312, 664
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	4 cut(s)	43, 252, 280, 497
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	5 cut(s)	398, 411, 536, 567, 714
DpnI	GATC	4 cut(s)	99, 416, 486, 789
DpnII	GATC	4 cut(s)	97, 414, 484, 787
DraIII	CACNNNGTG	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	4 cut(s)	46, 255, 283, 500
FatI	CATG	4 cut(s)	42, 251, 279, 496
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	393, 579, 630
Fsp4HI	GCNGC	3 cut(s)	393, 579, 630
FspBI	CTAG	2 cut(s)	450, 641
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	3 cut(s)	393, 579, 630
GsaI	CCCAGC	2 cut(s)	188, 525
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	4 cut(s)	149, 260, 314, 666
HapII	CCGG	2 cut(s)	146, 337
HhaI	GCGC	1 cut(s)	800
Hin1II	CATG	4 cut(s)	46, 255, 283, 500
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	5 cut(s)	118, 180, 419, 608, 731
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	146, 337
Hpy166II	GTNNAC	3 cut(s)	40, 222, 367
Hpy188I	TCNGA	5 cut(s)	97, 206, 399, 537, 715
Hpy188III	TCNNGA	6 cut(s)	101, 510, 584, 674, 735, 791
Hpy8I	GTNNAC	3 cut(s)	40, 222, 367
HpyAV	CCTTC	4 cut(s)	58, 511, 619, 716
HpyCH4III	ACNGT	4 cut(s)	37, 294, 319, 375
HpyCH4V	TGCA	7 cut(s)	6, 80, 227, 446, 632, 655, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 755
HpyF3I	CTNAG	5 cut(s)	398, 411, 536, 567, 714
Hsp92II	CATG	4 cut(s)	46, 255, 283, 500
HspAI	GCGC	1 cut(s)	798
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	97, 414, 484, 787
LmnI	GCTCC	6 cut(s)	164, 193, 433, 586, 644, 755
Lsp1109I	GCAGC	3 cut(s)	379, 590, 616
LweI	GCATC	3 cut(s)	15, 569, 667
MaeI	CTAG	2 cut(s)	450, 641
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	4 cut(s)	99, 416, 486, 789
MboI	GATC	4 cut(s)	97, 414, 484, 787
MboII	GAAGA	4 cut(s)	414, 468, 634, 740
MfeI	CAATTG	2 cut(s)	612, 759
MflI	RGATCY	2 cut(s)	97, 787
MluCI	AATT	8 cut(s)	123, 173, 353, 384, 480, 612, 759, 817
MlyI	GAGTC	2 cut(s)	602, 725
MmeI	TCCRAC	5 cut(s)	50, 75, 114, 301, 813
MnlI	CCTC	8 cut(s)	121, 250, 294, 317, 466, 598, 610, 658
MroNI	GCCGGC	1 cut(s)	145
MseI	TTAA	6 cut(s)	39, 215, 387, 573, 684, 844
MspI	CCGG	2 cut(s)	146, 337
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	2 cut(s)	612, 759
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	12, 755
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	4 cut(s)	97, 414, 484, 787
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	46, 255, 283, 500
NlaIV	GGNNCC	2 cut(s)	313, 646
NspI	RCATGY	2 cut(s)	255, 283
PciI	ACATGT	1 cut(s)	251
PctI	GAATGC	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	118, 180, 419
PflMI	CCANNNNNTGG	1 cut(s)	697
PkrI	GCNGC	3 cut(s)	394, 580, 631
PleI	GAGTC	2 cut(s)	602, 725
PpsI	GAGTC	2 cut(s)	602, 725
PscI	ACATGT	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	479
PspFI	CCCAGC	2 cut(s)	184, 521
PspN4I	GGNNCC	2 cut(s)	313, 646
PspPI	GGNCC	2 cut(s)	312, 664
PsuI	RGATCY	2 cut(s)	97, 787
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
SaqAI	TTAA	6 cut(s)	39, 215, 387, 573, 684, 844
SatI	GCNGC	3 cut(s)	393, 579, 630
Sau3AI	GATC	4 cut(s)	97, 414, 484, 787
Sau96I	GGNCC	2 cut(s)	312, 664
SchI	GAGTC	2 cut(s)	602, 725
ScrFI	CCNGG	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	15, 569, 667
SfcI	CTRYAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	8 cut(s)	123, 173, 353, 384, 480, 612, 759, 817
SspMI	CTAG	2 cut(s)	450, 641
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	4 cut(s)	37, 294, 319, 375
TaqI	TCGA	4 cut(s)	102, 417, 511, 673
TasI	AATT	8 cut(s)	123, 173, 353, 384, 480, 612, 759, 817
TfiI	GAWTC	3 cut(s)	118, 180, 419
Tru1I	TTAA	6 cut(s)	39, 215, 387, 573, 684, 844
Tru9I	TTAA	6 cut(s)	39, 215, 387, 573, 684, 844
TscAI	CASTG	3 cut(s)	229, 322, 657
TseI	GCWGC	3 cut(s)	392, 578, 629
TspRI	CASTG	3 cut(s)	229, 322, 657
Van91I	CCANNNNNTGG	1 cut(s)	697
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	2 cut(s)	255, 283
XspI	CTAG	2 cut(s)	450, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.