Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

60613868 .. 60616479

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAAGAGTGGTATTTTATCCAAAACCTTGGTCATTTGACTTGATCAAACATTCTCTTTATATCGAAAATCCCACCGTTTACGCCAAACGTTTATCCGAAGCAGCAGCAGCAGCAATGGCAGTGGTAGCTCGTTTCTCTTGCTTCTTCACTCACCCCAAGACCTCCGCCCGATCTCCACCCTCCGATCAATTCTCCCTCAAGTCCACCCTCCTCGAACCATGGAAGTCGGCGTTTCTTCCATTTAAAGTCGAAGCGTTTAGAGAGAATCAAATTGAAGTGCTGGAGATGTCGCCGGCCACAAAATGTCAGGGGGCTACAGAATTGAGATTCCCAGCAATGGAGCTTCTCCTCGGTAACACCTTAATGTTCACTGCACCTTTGAATGCTTTGGCAGAAACATGTGAGGCCGACGACTCTTTTTTCAACATGCCTCTGCTACTGTCTGTTGCCCTTGTAGGGGCCACTGTTGGAGGGCTGGTTGCCCGGCAAAGGAAAGGGGAATTACAACGAGTGAACGAACAGTTACGACAAATTAATGCTGCTCTGAGAAGACAAGCTAAGATCGAATCATATGCTCCCACTTTGAGTTATGCACCTAGTGGAAGAATACCAGAGAGCGAGGTTATAATTGATCCAAGGAAGCATGAGTTGATTTCTCGATTGAAGGCTGGGAAAAACTTTCTGAGAAACCAAGAACCACAGAAAGCATCTACTGAGTTTAAGGCAGCTCTGGAGCTTGCTCAAAGTTTGGAGGACTCAATTGAGGAGAAGAAGGCTGCAAGGGGTCTAGGAGCCTCACTACAACGACAGGGCCAATATCGAGATGCCATTAAGTACCATTCTATGGTTTTGGCAATCTCCGAGCGAGAAGGAGAAGACTCAGGAAACACAGAAGCTTATGGAGCAATTGCTGATTGTTATACCGAGCTTGGAGATCTTGAGAGCGCAGGGAAGTTCTATGACAATTATATTGCAAGGTTGGAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

331

Amino Acids

36.84

Weight (kDa)

6.49

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	227 - 288	2.2e-07	Tetratricopeptide repeat
TPR_12	PF13424	260 - 327	1.3e-09	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AccB7I	CCANNNNNTGG	1 cut(s)	847
AciI	CCGC	1 cut(s)	168
AclI	AACGTT	1 cut(s)	91
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	1 cut(s)	297
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	1 cut(s)	839
AfiI	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	4 cut(s)	278, 385, 427, 667
AluBI	AGCT	7 cut(s)	131, 346, 560, 731, 739, 899, 931
AluI	AGCT	7 cut(s)	131, 346, 560, 731, 739, 899, 931
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	4 cut(s)	297, 408, 462, 814
ApeKI	GCWGC	7 cut(s)	104, 107, 110, 113, 542, 728, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	950
AspS9I	GGNCC	2 cut(s)	462, 814
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	146
BbsI	GAAGAC	2 cut(s)	559, 885
BbvI	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	487
BfaI	CTAG	2 cut(s)	600, 791
BfmI	CTRYAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
BlsI	GCNGC	7 cut(s)	106, 109, 112, 115, 544, 730, 781
Bme1390I	CCNGG	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	462, 814
BmiI	GGNNCC	2 cut(s)	463, 796
BmrFI	CCNGG	1 cut(s)	487
BmsI	GCATC	2 cut(s)	719, 817
BpiI	GAAGAC	2 cut(s)	559, 885
BpmI	CTGGAG	2 cut(s)	305, 755
BpuEI	CTTGAG	2 cut(s)	185, 962
BpuMI	CCSGG	1 cut(s)	487
BsaJI	CCNNGG	4 cut(s)	29, 221, 352, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
Bse118I	RCCGGY	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	123, 345
BseDI	CCNNGG	4 cut(s)	29, 221, 352, 638
BseLI	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
BseMI	GCAATG	2 cut(s)	123, 345
BseMII	CTCAG	4 cut(s)	539, 677, 708, 897
BseRI	GAGGAG	3 cut(s)	203, 341, 782
BseXI	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
BseYI	CCCAGC	2 cut(s)	334, 671
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	4 cut(s)	299, 410, 464, 816
BsiSI	CCGG	2 cut(s)	296, 487
BslI	CCNNNNNNNGG	5 cut(s)	340, 459, 460, 492, 847
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	4 cut(s)	299, 410, 464, 816
Bsp143I	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	4 cut(s)	299, 410, 464, 816
BspCNI	CTCAG	4 cut(s)	540, 678, 709, 896
BspLI	GGNNCC	2 cut(s)	463, 796
BspPI	GGATC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	123, 345
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	4 cut(s)	29, 221, 352, 638
BssMI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
BssT1I	CCWWGG	3 cut(s)	29, 221, 638
Bst4CI	ACNGT	4 cut(s)	79, 444, 469, 525
BstC8I	GCNNGC	2 cut(s)	297, 741
BstDEI	CTNAG	5 cut(s)	548, 561, 686, 717, 883
BstDSI	CCRYGG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	6 cut(s)	48, 176, 190, 567, 637, 940
BstMBI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 113, 119, 128, 905
BstNSI	RCATGY	2 cut(s)	405, 433
BstSCI	CCNGG	1 cut(s)	485
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
BstV2I	GAAGAC	2 cut(s)	559, 885
BstX2I	RGATCY	1 cut(s)	937
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	4 cut(s)	299, 410, 464, 816
BtgI	CCRYGG	1 cut(s)	221
BtsI	GCAGTG	2 cut(s)	129, 372
BtsIMutI	CAGTG	3 cut(s)	129, 372, 465
Cac8I	GCNNGC	2 cut(s)	297, 741
CfoI	GCGC	1 cut(s)	950
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	462, 814
Csp6I	GTAC	1 cut(s)	838
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	4 cut(s)	222, 402, 430, 647
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	5 cut(s)	548, 561, 686, 717, 883
DpnI	GATC	6 cut(s)	47, 175, 189, 566, 636, 939
DpnII	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
DraI	TTTAAA	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	29, 221, 638
EcoT14I	CCWWGG	3 cut(s)	29, 221, 638
ErhI	CCWWGG	3 cut(s)	29, 221, 638
FaeI	CATG	4 cut(s)	225, 405, 433, 650
FatI	CATG	4 cut(s)	221, 401, 429, 646
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
Fsp4HI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
FspBI	CTAG	2 cut(s)	600, 791
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
GsaI	CCCAGC	2 cut(s)	338, 675
GsuI	CTGGAG	2 cut(s)	305, 755
HaeIII	GGCC	4 cut(s)	299, 410, 464, 816
HapII	CCGG	2 cut(s)	296, 487
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	4 cut(s)	225, 405, 433, 650
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HindIII	AAGCTT	1 cut(s)	897
HinfI	GANTC	6 cut(s)	268, 330, 416, 569, 758, 881
HpaII	CCGG	2 cut(s)	296, 487
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	4 cut(s)	82, 207, 372, 517
Hpy188I	TCNGA	5 cut(s)	100, 187, 549, 687, 865
Hpy188III	TCNNGA	5 cut(s)	660, 734, 824, 885, 941
Hpy8I	GTNNAC	4 cut(s)	82, 207, 372, 517
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	661, 769, 866
HpyCH4III	ACNGT	4 cut(s)	79, 444, 469, 525
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	377, 596, 782, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 113, 119, 128, 905
HpyF3I	CTNAG	5 cut(s)	548, 561, 686, 717, 883
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	4 cut(s)	225, 405, 433, 650
HspAI	GCGC	1 cut(s)	948
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
LmnI	GCTCC	5 cut(s)	343, 583, 736, 794, 905
Lsp1109I	GCAGC	7 cut(s)	116, 119, 122, 125, 529, 740, 766
LweI	GCATC	2 cut(s)	719, 817
MaeI	CTAG	2 cut(s)	600, 791
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	356, 525
MalI	GATC	6 cut(s)	47, 175, 189, 566, 636, 939
MboI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
MboII	GAAGA	6 cut(s)	139, 230, 564, 618, 784, 890
MfeI	CAATTG	2 cut(s)	762, 909
MflI	RGATCY	1 cut(s)	937
MluCI	AATT	9 cut(s)	191, 273, 323, 503, 534, 630, 762, 909, 967
MlyI	GAGTC	3 cut(s)	410, 752, 875
MmeI	TCCRAC	2 cut(s)	451, 963
MroNI	GCCGGC	1 cut(s)	295
MseI	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	2 cut(s)	296, 487
MspR9I	CCNGG	1 cut(s)	487
MunI	CAATTG	2 cut(s)	762, 909
Mva1269I	GAATGC	1 cut(s)	391
MwoI	GCNNNNNNNGC	5 cut(s)	110, 113, 119, 128, 905
NaeI	GCCGGC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	487
NcoI	CCATGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
NgoMIV	GCCGGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	225, 405, 433, 650
NlaIV	GGNNCC	2 cut(s)	463, 796
NspI	RCATGY	2 cut(s)	405, 433
PciI	ACATGT	1 cut(s)	401
PctI	GAATGC	1 cut(s)	391
PdiI	GCCGGC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	268, 330, 569
PflMI	CCANNNNNTGG	1 cut(s)	847
PkrI	GCNGC	7 cut(s)	106, 109, 112, 115, 544, 730, 781
PleI	GAGTC	3 cut(s)	410, 752, 875
PpsI	GAGTC	3 cut(s)	410, 752, 875
PscI	ACATGT	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	629
Psp1406I	AACGTT	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	334, 671
PspN4I	GGNNCC	2 cut(s)	463, 796
PspPI	GGNCC	2 cut(s)	462, 814
PsuI	RGATCY	1 cut(s)	937
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
SatI	GCNGC	7 cut(s)	105, 108, 111, 114, 543, 729, 780
Sau3AI	GATC	6 cut(s)	45, 173, 187, 564, 634, 937
Sau96I	GGNCC	2 cut(s)	462, 814
SchI	GAGTC	3 cut(s)	410, 752, 875
ScrFI	CCNGG	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	719, 817
SfcI	CTRYAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	200, 941
SmoI	CTYRAG	2 cut(s)	200, 941
Sse9I	AATT	9 cut(s)	191, 273, 323, 503, 534, 630, 762, 909, 967
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	600, 791
StyD4I	CCNGG	1 cut(s)	485
StyI	CCWWGG	3 cut(s)	29, 221, 638
TaaI	ACNGT	4 cut(s)	79, 444, 469, 525
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	6 cut(s)	66, 216, 252, 567, 661, 823
TasI	AATT	9 cut(s)	191, 273, 323, 503, 534, 630, 762, 909, 967
TfiI	GAWTC	3 cut(s)	268, 330, 569
Tru1I	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
Tru9I	TTAA	6 cut(s)	246, 365, 537, 723, 834, 994
TscAI	CASTG	3 cut(s)	129, 379, 472
TseI	GCWGC	7 cut(s)	104, 107, 110, 113, 542, 728, 779
TspRI	CASTG	3 cut(s)	129, 379, 472
Van91I	CCANNNNNTGG	1 cut(s)	847
VspI	ATTAAT	1 cut(s)	537
XceI	RCATGY	2 cut(s)	405, 433
XspI	CTAG	2 cut(s)	600, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.