Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Forward (+)

2722935 .. 2726841

Gene Structure 3907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G037600.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGTGGTAGCCCGTTTCTCCTGCTGCTTATTTACTCACCCGAAGAACTCCGGCCGATCTCCACTGTCCGATCAAATCTCCGTCAAGTCCAGTCTTCCTGAACCAGGGAAGTTACCTTCTCTTCCATTTCAAGCCGAAAAGCTTAGGTCAGCATTTGGAAATACTTTAGACGGACTGTTTGAGATCCACCATGTGTTGCCAAACAAAAAAAGTCAGCAGGGAGACATACAGTTGAGATTCCCAGCAATGGAACTTTTGGTTGGTAATGCCTTAATACTGACAACACCTTTGAAGGCCTTAGCAGAAACATGTGAAGCTGAAAACTCTGTTTTCAACATGAACATGCCTGTACTGCTGTTTGTAGCCCTCGTAGGGGCCACTGTTGGTGGCTTGCTTGCTCGGCAAAGGAAAGGAGAATTACAGCGAGTGAATGAACAGTTGCGTCAAATCAATCAGTCTCTAAGAAGGCAGGCTAAGATTGAGTCATATGCTCCCACTTTGAGTTATTCACCTATTGGTGCAAAAGTACTTCCAGAGAATGAGGTGATAGTTGATCCAAGAAAGCATGAGTTGATTTCTCGATTGAAGGCTGGGAAGAACTTTTTGAGGAATCAAGAAACAGAAAAAGCACTGGGCGAGTTTAAGACAGCTCTTGAGCTTGCTCAAAGTGTGAAGGACCCAATTGAGGAAAAGAAGGCTGCAAGAGGTTTAGCTTCAGGTGGCAGTGTGAACGATGATGAACAGTTTGCAATTGTACTTGTCTTAAATTATGTTGGTTTGGGTGCCTCGCTGCAAAGACTGGGCAAGTACCGAGACGCCATTAAATACCATTCTATGGTTTTGGCAATCTCCGAGCGAGAAGGAGAAGACTCAGGAAACACAGAAGCTTATGGAGCAATTGCTGATTGTTATACCGAGCTCGGAGATCTCGAACGGGCAGGGAAGTTCTATGACAATTATATTGCAAGGTTGGAATCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

329

Amino Acids

36.06

Weight (kDa)

6.98

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	785
AccB7I	CCANNNNNTGG	1 cut(s)	838
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	181, 551
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	702
AcyI	GRCGYC	1 cut(s)	819
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	4 cut(s)	354, 531, 759, 812
AfiI	CCNNNNNNNGG	6 cut(s)	107, 250, 375, 376, 688, 838
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	134, 295, 337, 589
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	7 cut(s)	145, 320, 653, 661, 716, 890, 922
AluI	AGCT	7 cut(s)	145, 320, 653, 661, 716, 890, 922
Alw21I	GWGCWC	1 cut(s)	924
Alw26I	GTCTC	3 cut(s)	219, 465, 810
AlwI	GGATC	2 cut(s)	181, 551
AoxI	GGCC	3 cut(s)	55, 297, 378
ApeKI	GCWGC	3 cut(s)	27, 701, 793
ArsI	GACNNNNNNTTYG	4 cut(s)	164, 196, 274, 306
AspS9I	GGNCC	2 cut(s)	378, 679
AsuHPI	GGTGA	3 cut(s)	32, 504, 559
AvaII	GGWCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	924
BbsI	GAAGAC	2 cut(s)	89, 876
Bbv12I	GWGCWC	1 cut(s)	924
BbvI	GCAGC	3 cut(s)	14, 688, 780
BciT130I	CCWGG	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	219, 465, 810
BglII	AGATCT	1 cut(s)	928
BisI	GCNGC	3 cut(s)	28, 702, 794
BlsI	GCNGC	3 cut(s)	29, 703, 795
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	2 cut(s)	378, 679
BmiI	GGNNCC	3 cut(s)	379, 681, 787
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	2 cut(s)	644, 812
BmuI	ACTGGG	2 cut(s)	644, 812
BpiI	GAAGAC	2 cut(s)	89, 876
Bpu10I	CCTNAGC	2 cut(s)	146, 301
BpuEI	CTTGAG	1 cut(s)	677
BsaHI	GRCGYC	1 cut(s)	819
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	6 cut(s)	107, 250, 375, 376, 688, 838
Bse1I	ACTGG	3 cut(s)	93, 639, 807
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	6 cut(s)	107, 250, 375, 376, 688, 838
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	888
BseNI	ACTGG	3 cut(s)	93, 639, 807
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	14, 688, 780
BseYI	CCCAGC	2 cut(s)	244, 593
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	57, 299, 380
BshNI	GGYRCC	1 cut(s)	785
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	924
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	6 cut(s)	107, 250, 375, 376, 688, 838
BsmAI	GTCTC	3 cut(s)	219, 465, 810
BsmBI	CGTCTC	1 cut(s)	810
BsnI	GGCC	3 cut(s)	57, 299, 380
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp143I	GATC	5 cut(s)	59, 73, 186, 556, 928
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	57, 299, 380
BspCNI	CTCAG	1 cut(s)	887
BspLI	GGNNCC	3 cut(s)	379, 681, 787
BspPI	GGATC	2 cut(s)	181, 551
BspT107I	GGYRCC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	93, 639, 807
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	5 cut(s)	59, 73, 186, 556, 928
BssNI	GRCGYC	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	6 cut(s)	69, 180, 234, 385, 441, 747
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	819
BstC8I	GCNNGC	4 cut(s)	395, 399, 474, 663
BstDEI	CTNAG	5 cut(s)	146, 301, 464, 477, 874
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstKTI	GATC	5 cut(s)	62, 76, 189, 559, 931
BstMAI	GTCTC	3 cut(s)	219, 465, 810
BstMBI	GATC	5 cut(s)	59, 73, 186, 556, 928
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 355, 403, 896
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	2 cut(s)	315, 349
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	14, 688, 780
BstV2I	GAAGAC	2 cut(s)	89, 876
BstX2I	RGATCY	2 cut(s)	186, 928
BstYI	RGATCY	2 cut(s)	186, 928
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	57, 299, 380
BtsI	GCAGTG	1 cut(s)	733
BtsIMutI	CAGTG	4 cut(s)	65, 381, 632, 733
Cac8I	GCNNGC	4 cut(s)	395, 399, 474, 663
Cfr13I	GGNCC	2 cut(s)	378, 679
CseI	GACGC	2 cut(s)	434, 827
Csp6I	GTAC	4 cut(s)	353, 530, 758, 811
CviAII	CATG	5 cut(s)	194, 312, 340, 346, 569
CviQI	GTAC	4 cut(s)	353, 530, 758, 811
DdeI	CTNAG	5 cut(s)	146, 301, 464, 477, 874
DpnI	GATC	5 cut(s)	61, 75, 188, 558, 930
DpnII	GATC	5 cut(s)	59, 73, 186, 556, 928
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	922
EclXI	CGGCCG	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	924
Eco47I	GGWCC	1 cut(s)	679
Eco52I	CGGCCG	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	922
Eco57I	CTGAAG	1 cut(s)	702
EcoICRI	GAGCTC	1 cut(s)	922
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	924
Esp3I	CGTCTC	1 cut(s)	810
FaeI	CATG	5 cut(s)	197, 315, 343, 349, 572
FatI	CATG	5 cut(s)	193, 311, 339, 345, 568
FauNDI	CATATG	1 cut(s)	490
Fnu4HI	GCNGC	3 cut(s)	28, 702, 794
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	3 cut(s)	28, 702, 794
GluI	GCNGC	3 cut(s)	28, 702, 794
GsaI	CCCAGC	2 cut(s)	248, 597
HaeIII	GGCC	3 cut(s)	57, 299, 380
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	2 cut(s)	434, 827
Hin1I	GRCGYC	1 cut(s)	819
Hin1II	CATG	5 cut(s)	197, 315, 343, 349, 572
HindIII	AAGCTT	2 cut(s)	143, 888
HinfI	GANTC	5 cut(s)	240, 485, 613, 872, 977
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	32, 504, 559
Hpy166II	GTNNAC	1 cut(s)	733
Hpy188I	TCNGA	4 cut(s)	73, 856, 926, 982
Hpy188III	TCNNGA	7 cut(s)	101, 536, 582, 617, 656, 876, 932
Hpy8I	GTNNAC	1 cut(s)	733
HpyAV	CCTTC	7 cut(s)	129, 289, 462, 583, 670, 691, 857
HpyCH4III	ACNGT	6 cut(s)	69, 180, 234, 385, 441, 747
HpyCH4V	TGCA	5 cut(s)	524, 704, 752, 796, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 355, 403, 896
HpyF3I	CTNAG	5 cut(s)	146, 301, 464, 477, 874
Hsp92I	GRCGYC	1 cut(s)	819
Hsp92II	CATG	5 cut(s)	197, 315, 343, 349, 572
Kzo9I	GATC	5 cut(s)	59, 73, 186, 556, 928
LmnI	GCTCC	2 cut(s)	499, 896
Lsp1109I	GCAGC	3 cut(s)	14, 688, 780
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	5 cut(s)	61, 75, 188, 558, 930
MboI	GATC	5 cut(s)	59, 73, 186, 556, 928
MboII	GAAGA	5 cut(s)	58, 89, 116, 610, 881
MfeI	CAATTG	3 cut(s)	684, 753, 900
MflI	RGATCY	2 cut(s)	186, 928
MhlI	GDGCHC	1 cut(s)	924
MluCI	AATT	6 cut(s)	419, 684, 753, 769, 900, 958
MlyI	GAGTC	2 cut(s)	494, 866
MmeI	TCCRAC	1 cut(s)	954
MnlI	CCTC	6 cut(s)	380, 538, 603, 682, 701, 799
MseI	TTAA	4 cut(s)	275, 645, 767, 825
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	108
MunI	CAATTG	3 cut(s)	684, 753, 900
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	4 cut(s)	11, 355, 403, 896
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	5 cut(s)	59, 73, 186, 556, 928
NlaIII	CATG	5 cut(s)	197, 315, 343, 349, 572
NlaIV	GGNNCC	3 cut(s)	379, 681, 787
NmeAIII	GCCGAG	1 cut(s)	382
NspI	RCATGY	2 cut(s)	315, 349
PceI	AGGCCT	1 cut(s)	299
PciI	ACATGT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PfeI	GAWTC	3 cut(s)	240, 613, 977
PflMI	CCANNNNNTGG	1 cut(s)	838
PkrI	GCNGC	3 cut(s)	29, 703, 795
PleI	GAGTC	2 cut(s)	493, 866
PpsI	GAGTC	2 cut(s)	493, 866
PpuMI	RGGWCCY	1 cut(s)	679
PscI	ACATGT	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	106
PspFI	CCCAGC	2 cut(s)	244, 593
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	379, 681, 787
PspPI	GGNCC	2 cut(s)	378, 679
PspPPI	RGGWCCY	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	186, 928
RsaI	GTAC	4 cut(s)	354, 531, 759, 812
RsaNI	GTAC	4 cut(s)	353, 530, 758, 811
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	924
SaqAI	TTAA	4 cut(s)	275, 645, 767, 825
SatI	GCNGC	3 cut(s)	28, 702, 794
Sau3AI	GATC	5 cut(s)	59, 73, 186, 556, 928
Sau96I	GGNCC	2 cut(s)	378, 679
ScaI	AGTACT	1 cut(s)	531
SchI	GAGTC	2 cut(s)	494, 866
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	924
SinI	GGWCC	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	6 cut(s)	419, 684, 753, 769, 900, 958
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	924
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	6 cut(s)	69, 180, 234, 385, 441, 747
TaqI	TCGA	2 cut(s)	583, 933
TasI	AATT	6 cut(s)	419, 684, 753, 769, 900, 958
TatI	WGTACW	3 cut(s)	352, 529, 757
TfiI	GAWTC	3 cut(s)	240, 613, 977
Tru1I	TTAA	4 cut(s)	275, 645, 767, 825
Tru9I	TTAA	4 cut(s)	275, 645, 767, 825
TscAI	CASTG	4 cut(s)	72, 388, 639, 733
TseI	GCWGC	3 cut(s)	27, 701, 793
TspDTI	ATGAA	3 cut(s)	356, 450, 756
TspGWI	ACGGA	2 cut(s)	73, 189
TspRI	CASTG	4 cut(s)	72, 388, 639, 733
Van91I	CCANNNNNTGG	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	679
XagI	CCTNNNNNAGG	1 cut(s)	105
XceI	RCATGY	2 cut(s)	315, 349
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.