Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

50450719 .. 50453675

Gene Structure 2957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTGATTCTAATAGTTTAAGCCTGAAACACACAAGTAGCATACTTTTCAGTATTCCTGATTTCTTTGTAGGGTTTGGTAACAAAGGTTCTTCAGATTCTGACTCAGTTAGGAGCCCTACATCTCCTCTGGACCTCAGGCCTTTTTCAAATCTTAGCAACCCATTTAGACTTAGGTCCGCTCGGTCATCATCCCACAATGGAAATCACAAGAAATGGGATTGTAGGAAAGCAGGCCTTGGCATTGTCAATTCCCTTGTTGATGAAACCAAAGCTACTAGTGAAGTTCTTGGTTCATCGAAGAGGAAAACCATAATTTTTCGACCACAGGTGGGGAAAAACAACCCTCACTCCTCAAAGCTTTGTTCTGGTTCAGATGATTATTCCATGAAGTCCCAATCTTTACCCAGAAACTACATAATTAGGCCACTTTCTGAAACCATATCTCTCAATCCCCAACTCAAACCAGATAAAGTGAATGTTTCATCTGGGTTTGTGGGACTTCCTTTGGAATCTGAACCATCTGAAAACATTGAACCGTTTTTGTTGGACTCCAGCAGGGATTCCTCACTGATTGTCTCTATGCAAGGAGAAAGTTCGTTGGGTTTTAAACCAAGTTCACTTCCAGTACCCATTGTCTCTAACCCTCAATATGCATCCTCTATCCCTGCTAGAGAGATGGAACTTTCTGAGGACTATACGTGTATAATTTCTCATGGTCCAAACCCGAAGACTACTCATATTTTTTGTGACTGTATATTGGAATGTCACACAAAATATTTAAACAATGTTGACAAAGAAATAGTCGAGATAGAATCACCTCGAGTGGGTCAGCACCAGGAGGGATTGGCACATGACCCTTCAGATGAAATTTTGAGATTCTGTTACACCTGCAAGAAGAACTTGGTAGGAGAGGAAATTTACATGTGCAGTGAGAAAGCATTTTGTAGTTTTGATTGTCACTCAGAGAAGATTTTTGCTGAAGAGGAAGCAGAAGAGAGTTGGGATAAATCTGCAGGAAGCTCTCCTGAAAGCTACCAGGAAGATCTCTTCTTATTGGGTATGCATAGTCAGGAGACTCGGGACATAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

364

Amino Acids

40.36

Weight (kDa)

5.31

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	284 - 330	4.8e-10	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	899
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	870, 918
AcuI	CTGAAG	3 cut(s)	78, 846, 1002
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	332, 827
AflIII	ACRYGT	2 cut(s)	701, 924
AgsI	TTSAA	2 cut(s)	150, 536
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	837, 1038
AluBI	AGCT	4 cut(s)	275, 361, 1023, 1035
AluI	AGCT	4 cut(s)	275, 361, 1023, 1035
Alw26I	GTCTC	3 cut(s)	583, 643, 1070
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	2 cut(s)	822, 1080
AoxI	GGCC	3 cut(s)	140, 235, 425
ApoI	RAATTY	2 cut(s)	870, 918
ArsI	GACNNNNNNTTYG	2 cut(s)	789, 821
AspS9I	GGNCC	3 cut(s)	133, 177, 719
AsuHPI	GGTGA	1 cut(s)	810
AvaI	CYCGRG	2 cut(s)	822, 1080
AvaII	GGWCC	3 cut(s)	133, 177, 719
AxyI	CCTNAGG	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	737
BccI	CCATC	2 cut(s)	529, 673
BciT130I	CCWGG	2 cut(s)	839, 1040
BcoDI	GTCTC	3 cut(s)	583, 643, 1070
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	2 cut(s)	279, 672
BfmI	CTRYAG	1 cut(s)	1014
BfuAI	ACCTGC	1 cut(s)	899
BglII	AGATCT	1 cut(s)	1045
Bme1390I	CCNGG	2 cut(s)	839, 1040
Bme18I	GGWCC	3 cut(s)	133, 177, 719
BmeT110I	CYCGRG	2 cut(s)	822, 1080
BmgT120I	GGNCC	3 cut(s)	133, 177, 719
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	839, 1040
BmsI	GCATC	1 cut(s)	665
BoxI	GACNNNNGTC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	538
BsaAI	YACGTR	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 827
Bse1I	ACTGG	1 cut(s)	626
Bse21I	CCTNAGG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	839, 1040
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	191, 656
BseLI	CCNNNNNNNGG	2 cut(s)	332, 827
BseMII	CTCAG	4 cut(s)	120, 151, 681, 978
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	2 cut(s)	117, 343
BsgI	GTGCAG	1 cut(s)	949
BshFI	GGCC	3 cut(s)	142, 237, 427
BsiHKCI	CYCGRG	2 cut(s)	822, 1080
BslFI	GGGAC	2 cut(s)	379, 513
BslI	CCNNNNNNNGG	2 cut(s)	332, 827
BsmAI	GTCTC	3 cut(s)	583, 643, 1070
BsmFI	GGGAC	2 cut(s)	379, 513
BsnI	GGCC	3 cut(s)	142, 237, 427
BsoBI	CYCGRG	2 cut(s)	822, 1080
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	1045
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	3 cut(s)	142, 237, 427
BspCNI	CTCAG	4 cut(s)	119, 150, 682, 977
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	1018
BspMI	ACCTGC	1 cut(s)	899
BsrBI	CCGCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	1045
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	839, 1040
Bst4CI	ACNGT	2 cut(s)	540, 755
Bst6I	CTCTTC	4 cut(s)	296, 978, 990, 1055
BstBAI	YACGTR	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	6 cut(s)	106, 137, 155, 173, 690, 964
BstF5I	GGATG	2 cut(s)	191, 656
BstKTI	GATC	1 cut(s)	1048
BstMAI	GTCTC	3 cut(s)	583, 643, 1070
BstMBI	GATC	1 cut(s)	1045
BstNI	CCWGG	2 cut(s)	839, 1040
BstNSI	RCATGY	1 cut(s)	928
BstPAI	GACNNNNGTC	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	837, 1038
BstSFI	CTRYAG	1 cut(s)	1014
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	1045
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	142, 237, 427
BtsCI	GGATG	2 cut(s)	191, 656
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	2 cut(s)	569, 937
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	133, 177, 719
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	4 cut(s)	388, 716, 854, 925
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	6 cut(s)	106, 137, 155, 173, 690, 964
DpnI	GATC	1 cut(s)	1047
DpnII	GATC	1 cut(s)	1045
DraI	TTTAAA	2 cut(s)	610, 783
Eam1104I	CTCTTC	4 cut(s)	296, 978, 990, 1055
EarI	CTCTTC	4 cut(s)	296, 978, 990, 1055
Eco130I	CCWWGG	1 cut(s)	238
Eco147I	AGGCCT	2 cut(s)	142, 237
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	3 cut(s)	133, 177, 719
Eco57I	CTGAAG	3 cut(s)	78, 846, 1002
Eco81I	CCTNAGG	1 cut(s)	137
Eco88I	CYCGRG	2 cut(s)	822, 1080
EcoRII	CCWGG	2 cut(s)	837, 1038
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	2 cut(s)	658, 1068
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	4 cut(s)	391, 719, 857, 928
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 887, 919
FaqI	GGGAC	2 cut(s)	379, 513
FatI	CATG	4 cut(s)	387, 715, 853, 924
FokI	GGATG	2 cut(s)	178, 643
FriOI	GRGCYC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	279, 672
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	3 cut(s)	142, 237, 427
Hin1II	CATG	4 cut(s)	391, 719, 857, 928
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	9 cut(s)	8, 98, 104, 512, 551, 563, 815, 879, 1078
HphI	GGTGA	1 cut(s)	810
Hpy166II	GTNNAC	2 cut(s)	620, 793
Hpy188I	TCNGA	9 cut(s)	97, 103, 376, 436, 517, 526, 691, 865, 967
Hpy188III	TCNNGA	6 cut(s)	59, 131, 808, 1028, 1073, 1082
Hpy8I	GTNNAC	2 cut(s)	620, 793
HpyAV	CCTTC	1 cut(s)	870
HpyCH4III	ACNGT	2 cut(s)	540, 755
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	6 cut(s)	586, 656, 894, 930, 1016, 1066
HpyF3I	CTNAG	6 cut(s)	106, 137, 155, 173, 690, 964
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	4 cut(s)	391, 719, 857, 928
Kzo9I	GATC	1 cut(s)	1045
LmnI	GCTCC	1 cut(s)	114
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	2 cut(s)	279, 672
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	5 cut(s)	80, 749, 767, 884, 959
MalI	GATC	1 cut(s)	1047
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	1 cut(s)	1045
MboII	GAAGA	9 cut(s)	84, 313, 742, 910, 982, 995, 1007, 1042, 1055
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	6 cut(s)	250, 315, 420, 708, 870, 918
MlyI	GAGTC	3 cut(s)	98, 545, 1072
MmeI	TCCRAC	1 cut(s)	528
Mph1103I	ATGCAT	2 cut(s)	658, 1068
MseI	TTAA	3 cut(s)	20, 609, 782
MspR9I	CCNGG	2 cut(s)	839, 1040
MvaI	CCWGG	2 cut(s)	839, 1040
NdeII	GATC	1 cut(s)	1045
NlaIII	CATG	4 cut(s)	391, 719, 857, 928
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	3 cut(s)	749, 767, 959
NsiI	ATGCAT	2 cut(s)	658, 1068
NspI	RCATGY	1 cut(s)	928
PaeR7I	CTCGAG	1 cut(s)	822
PaqCI	CACCTGC	1 cut(s)	899
PceI	AGGCCT	2 cut(s)	142, 237
PciI	ACATGT	1 cut(s)	924
PfeI	GAWTC	6 cut(s)	8, 98, 512, 563, 815, 879
PleI	GAGTC	3 cut(s)	98, 545, 1072
PpsI	GAGTC	3 cut(s)	98, 545, 1072
Ppu21I	YACGTR	1 cut(s)	702
PscI	ACATGT	1 cut(s)	924
PshAI	GACNNNNGTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	837, 1038
PspGI	CCWGG	2 cut(s)	837, 1038
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	3 cut(s)	133, 177, 719
PspXI	VCTCGAGB	1 cut(s)	822
PsrI	GAACNNNNNNTAC	2 cut(s)	73, 105
PstI	CTGCAG	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	1045
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	20, 609, 782
Sau3AI	GATC	1 cut(s)	1045
Sau96I	GGNCC	3 cut(s)	133, 177, 719
SchI	GAGTC	3 cut(s)	98, 545, 1072
ScrFI	CCNGG	2 cut(s)	839, 1040
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	1 cut(s)	1014
Sfr274I	CTCGAG	1 cut(s)	822
SinI	GGWCC	3 cut(s)	133, 177, 719
SlaI	CTCGAG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	6 cut(s)	250, 315, 420, 708, 870, 918
SseBI	AGGCCT	2 cut(s)	142, 237
SsiI	CCGC	1 cut(s)	180
SspI	AATATT	1 cut(s)	779
SspMI	CTAG	2 cut(s)	279, 672
StuI	AGGCCT	2 cut(s)	142, 237
StyD4I	CCNGG	2 cut(s)	837, 1038
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	540, 755
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	4 cut(s)	299, 322, 807, 823
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	6 cut(s)	250, 315, 420, 708, 870, 918
TfiI	GAWTC	6 cut(s)	8, 98, 512, 563, 815, 879
Tru1I	TTAA	3 cut(s)	20, 609, 782
Tru9I	TTAA	3 cut(s)	20, 609, 782
TscAI	CASTG	2 cut(s)	576, 937
TseFI	GTSAC	3 cut(s)	749, 767, 959
Tsp45I	GTSAC	3 cut(s)	749, 767, 959
TspDTI	ATGAA	5 cut(s)	279, 285, 404, 474, 882
TspRI	CASTG	2 cut(s)	576, 937
VpaK11BI	GGWCC	3 cut(s)	133, 177, 719
XapI	RAATTY	2 cut(s)	870, 918
XceI	RCATGY	1 cut(s)	928
XhoI	CTCGAG	1 cut(s)	822
XspI	CTAG	2 cut(s)	279, 672
Zsp2I	ATGCAT	2 cut(s)	658, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.