Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

11723285 .. 11725727

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGACATTTCAACTATCCAAAACAAAATCCTTTGTGCTCATGTCGGATGGCAAAGAAACCATTTTTATACGCGCACGGATTCTGACTGCTCATATCGAGAAAAGCTCATTGGGAACAACCACACCAACGTTTATCCGAACCAAATGGCAGTGGTAGCCCGTTTCTCCTGCTGCTTCTTCACCCACACCAAGAACTCCGGCCGATCTCCGCCGTCCGATCAAATCCCCCTCAACTCCAATCTTTCCGAACCCGGAAAGTTAGCTTCTCTTCCGTTTAAAGTCGAAAAGCTTGTTTCATCGTTTGGAAATAAATTAGATGGAGTGTGTGAGATCCACCATATGTTGCCAAACTCAAAATGTCAGGGAGACATAAAGTTGAGATTCCCAGCAATGGGACTTCTCTTCGGCAATGCCTTAATGTTGACAACGCCATTGAAAGCTTTGGCAGAAACATGTGAGGCTGACAACTCTGGTTTCAGCATGCCTGTACTGCTCTTTGTTGCCCTTGTTGGGGCTACTGTTGGTGGCTTGGTTGCTCGGCAAAGGAAAGGGGAATTACAGCGAGTGAATGAACAGTTGCGTCAAATCAATCAATCTCTAAGAAGGCAAGCTAAGATTGAGTCATATGCTCCGAGTTTGAGTTATTCGCCAATTGGTGCAAAAGTACTACCAGAGAGTGAGGTGATAGTTGATCCGAGGAAGCACGATTTGATTTCTCGACTGAAATCTGGGAAGAATTTTTTGAGAAACCAAGAAACAGAAAAAGCACTCAACGAGTTTAAGACTGCGCTTGAGCTTGCCCAAAGTGTGAAGGACCCAATTGAGGAAAAGAAGGCTGCAAGAGGTTTAGGAGCCTCACTGCAAAGATTGGGCAAGTACCGAGATGCCATTAAATACCACTCTTTGGTTCTGGACATCTCCAAGCGAGAAGGAGAAGACTCAGGAAACACAGAAGCTTACGGTGCAATTGCTGATTGTTATACTGAGCTTGGTGATCTGGAGCGTGCAGGGAAGTTCTATGACAATTATATTGCGAGGTTGGAGTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

351

Amino Acids

38.91

Weight (kDa)

8.78

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	904
AccII	CGCG	1 cut(s)	73
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	2 cut(s)	325, 686
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	736
AfaI	GTAC	3 cut(s)	489, 666, 878
AfiI	CCNNNNNNNGG	6 cut(s)	391, 392, 510, 511, 823, 904
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	12, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	8 cut(s)	106, 263, 289, 440, 611, 796, 956, 988
AluI	AGCT	8 cut(s)	106, 263, 289, 440, 611, 796, 956, 988
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	325, 686
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	171, 836
ApoI	RAATTY	1 cut(s)	736
AspLEI	GCGC	2 cut(s)	75, 790
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	3 cut(s)	172, 694, 1004
AvaII	GGWCC	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	158, 823
BccI	CCATC	2 cut(s)	42, 311
BceAI	ACGGC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	360
BisI	GCNGC	2 cut(s)	172, 837
BlsI	GCNGC	2 cut(s)	173, 838
BmcAI	AGTACT	1 cut(s)	666
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	2 cut(s)	816, 853
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	874
BpiI	GAAGAC	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BpmI	CTGGAG	1 cut(s)	1019
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	6 cut(s)	391, 392, 510, 511, 823, 904
Bse3DI	GCAATG	2 cut(s)	396, 415
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	6 cut(s)	391, 392, 510, 511, 823, 904
BseMI	GCAATG	2 cut(s)	396, 415
BseMII	CTCAG	2 cut(s)	954, 975
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	158, 823
BseYI	CCCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	1026
Bsh1236I	CGCG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	198, 252
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	6 cut(s)	391, 392, 510, 511, 823, 904
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	5 cut(s)	203, 217, 330, 691, 994
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	953, 976
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	816, 853
BspPI	GGATC	2 cut(s)	325, 686
BsrDI	GCAATG	2 cut(s)	396, 415
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	5 cut(s)	203, 217, 330, 691, 994
Bst4CI	ACNGT	3 cut(s)	520, 576, 962
Bst6I	CTCTTC	2 cut(s)	273, 407
BstC8I	GCNNGC	4 cut(s)	482, 609, 798, 1005
BstDEI	CTNAG	4 cut(s)	599, 612, 940, 984
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	75, 790
BstKTI	GATC	5 cut(s)	206, 220, 333, 694, 997
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	5 cut(s)	203, 217, 330, 691, 994
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 490, 962
BstNSI	RCATGY	2 cut(s)	456, 484
BstSCI	CCNGG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	158, 823
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	2 cut(s)	156, 857
BtsIMutI	CAGTG	2 cut(s)	156, 857
Cac8I	GCNNGC	4 cut(s)	482, 609, 798, 1005
CfoI	GCGC	2 cut(s)	75, 790
Cfr13I	GGNCC	1 cut(s)	814
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	488, 665, 877
CviAII	CATG	3 cut(s)	41, 453, 481
CviQI	GTAC	3 cut(s)	488, 665, 877
DdeI	CTNAG	4 cut(s)	599, 612, 940, 984
DpnI	GATC	5 cut(s)	205, 219, 332, 693, 996
DpnII	GATC	5 cut(s)	203, 217, 330, 691, 994
DraI	TTTAAA	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	199
EagI	CGGCCG	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	273, 407
EarI	CTCTTC	2 cut(s)	273, 407
EciI	GGCGGA	1 cut(s)	198
EclXI	CGGCCG	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	814
Eco52I	CGGCCG	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	814
FaeI	CATG	3 cut(s)	44, 456, 484
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	40, 452, 480
FauNDI	CATATG	2 cut(s)	339, 625
Fnu4HI	GCNGC	2 cut(s)	172, 837
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	172, 837
GlaI	GCGC	2 cut(s)	74, 789
GluI	GCNGC	2 cut(s)	172, 837
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	1019
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	2 cut(s)	198, 252
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	2 cut(s)	75, 790
Hin1II	CATG	3 cut(s)	44, 456, 484
Hin6I	GCGC	2 cut(s)	73, 788
HinP1I	GCGC	2 cut(s)	73, 788
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	3 cut(s)	287, 438, 954
HinfI	GANTC	5 cut(s)	80, 381, 620, 938, 1043
HpaII	CCGG	2 cut(s)	198, 252
HphI	GGTGA	3 cut(s)	172, 694, 1004
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	8 cut(s)	47, 85, 138, 217, 247, 633, 696, 1048
Hpy188III	TCNNGA	5 cut(s)	98, 717, 911, 942, 998
Hpy8I	GTNNAC	1 cut(s)	423
HpyAV	CCTTC	4 cut(s)	597, 805, 826, 923
HpyCH4III	ACNGT	3 cut(s)	520, 576, 962
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	659, 839, 862, 965, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 490, 962
HpyF3I	CTNAG	4 cut(s)	599, 612, 940, 984
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	44, 456, 484
HspAI	GCGC	2 cut(s)	73, 788
Kzo9I	GATC	5 cut(s)	203, 217, 330, 691, 994
LmnI	GCTCC	3 cut(s)	634, 851, 1000
Lsp1109I	GCAGC	2 cut(s)	158, 823
LweI	GCATC	1 cut(s)	874
MaeII	ACGT	1 cut(s)	129
MalI	GATC	5 cut(s)	205, 219, 332, 693, 996
MboI	GATC	5 cut(s)	203, 217, 330, 691, 994
MboII	GAAGA	5 cut(s)	169, 260, 394, 745, 947
MfeI	CAATTG	3 cut(s)	651, 819, 966
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	7 cut(s)	311, 554, 651, 736, 819, 966, 1024
MlyI	GAGTC	3 cut(s)	629, 932, 1052
MmeI	TCCRAC	2 cut(s)	25, 1020
MnlI	CCTC	8 cut(s)	239, 451, 673, 690, 817, 836, 865, 1029
MseI	TTAA	4 cut(s)	276, 416, 780, 891
MspI	CCGG	2 cut(s)	198, 252
MspR9I	CCNGG	1 cut(s)	252
MunI	CAATTG	3 cut(s)	651, 819, 966
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	155, 490, 962
NciI	CCSGG	1 cut(s)	252
NdeI	CATATG	2 cut(s)	339, 625
NdeII	GATC	5 cut(s)	203, 217, 330, 691, 994
NlaIII	CATG	3 cut(s)	44, 456, 484
NlaIV	GGNNCC	2 cut(s)	816, 853
NmeAIII	GCCGAG	1 cut(s)	517
NspI	RCATGY	2 cut(s)	456, 484
PaeI	GCATGC	1 cut(s)	484
PciI	ACATGT	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	80, 381
PflMI	CCANNNNNTGG	1 cut(s)	904
PkrI	GCNGC	2 cut(s)	173, 838
PleI	GAGTC	3 cut(s)	628, 932, 1051
PpsI	GAGTC	3 cut(s)	628, 932, 1051
PpuMI	RGGWCCY	1 cut(s)	814
PscI	ACATGT	1 cut(s)	452
Psp1406I	AACGTT	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	814
PspFI	CCCAGC	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	816, 853
PspPI	GGNCC	1 cut(s)	814
PspPPI	RGGWCCY	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	330
RsaI	GTAC	3 cut(s)	489, 666, 878
RsaNI	GTAC	3 cut(s)	488, 665, 877
SaqAI	TTAA	4 cut(s)	276, 416, 780, 891
SatI	GCNGC	2 cut(s)	172, 837
Sau3AI	GATC	5 cut(s)	203, 217, 330, 691, 994
Sau96I	GGNCC	1 cut(s)	814
ScaI	AGTACT	1 cut(s)	666
SchI	GAGTC	3 cut(s)	629, 932, 1052
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	874
SinI	GGWCC	1 cut(s)	814
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	7 cut(s)	311, 554, 651, 736, 819, 966, 1024
SsiI	CCGC	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	520, 576, 962
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	97, 282, 718
TasI	AATT	7 cut(s)	311, 554, 651, 736, 819, 966, 1024
TatI	WGTACW	2 cut(s)	487, 664
TfiI	GAWTC	2 cut(s)	80, 381
Tru1I	TTAA	4 cut(s)	276, 416, 780, 891
Tru9I	TTAA	4 cut(s)	276, 416, 780, 891
TscAI	CASTG	2 cut(s)	156, 864
TseI	GCWGC	2 cut(s)	171, 836
TspDTI	ATGAA	2 cut(s)	285, 585
TspGWI	ACGGA	2 cut(s)	92, 261
TspRI	CASTG	2 cut(s)	156, 864
Van91I	CCANNNNNTGG	1 cut(s)	904
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	2 cut(s)	456, 484
ZrmI	AGTACT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.