Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

64073290 .. 64075819

Gene Structure 2530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCACGAGTGGTATTTTATCCAAAACCGTGGTCACTTGACTTGATCAAACATTCTCTTTATATCGAAAATCCCACCGTTTACGCCAAACGTTTATCCGAAGCAGCGGCAGCAGCAGCAGCAATGGCAGTGGTAGCTCGTTTCTCTTGCTTCTTCACTCACCCCAAGACCTCCGCCCGATCTCCACCCTCCGATCAATTCTCCCTCAAGTCCACCCTCCTCGAACCATGGAAGTCGGCGTTTCTTCCATTTAAAGTCGAAGCGTTTGGAGAGAATCAAATTGAGGTGTTGGAGATGTCGCCGGCCACAAAATGTCAGGGAGCTACAGAATTGAGATTCCCAGCAATGGAGCTTCTGCTCGGAAATGCCTTAATGTTCACTGCACCTTTGAATGCTTTGGCAGAAACATGTGAGGCCGACAACTCTTTTTTCAACATGCCTCTGCTACTGTCTGTTGCCCTTGTAGGGGCCACTGTTGGAGGGCTGGTTGCCCGGCAAAGGAAAGGGGAATTACAACGAGTGAACGAACAGTTACGACAAATTAATGCTGCTCTGAGAAGACAAGCTAAGATCGAATCATATGCTCCCACTTTGAGTTATGCACCTAGTGGAAGAATACCAGAGAGCGAGGTTATAATTGATCCAAGGAAGCATGAGTTGATTTCTCGATTGAAGGCTGGGAAAAACTTTCTGAGAAACCAAGAACCACAGAAAGCATCTACTGAGTTTAAGGCAGCTCTGGAGCTTGCTCAAAGTTTGGAGGACTCAATTGAGGAGAAGAAGGCTGCAAGGGGTCTAGGAGCCTCACTGCAACGACAGGGCCAATATCGAGATGCCATTAAGTACCATTCTATGGTTTTGGCAATCTCTGAGCGAGAAGGAGAAGACTCGGGAAACACAGAAGCTTATGGAGCAATTGCTGATTGTTATACCGAGCTTGGAGATCTTGAGAGCGCAGGGAAGTTCTATGACAATTATATTGCAAGGTTGGAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

333

Amino Acids

36.82

Weight (kDa)

6.49

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	229 - 290	2.3e-07	Tetratricopeptide repeat
TPR_12	PF13424	262 - 329	1.3e-09	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	853
AciI	CCGC	2 cut(s)	107, 174
AclI	AACGTT	1 cut(s)	91
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	608
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	5 cut(s)	346, 465, 466, 498, 853
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	391, 433, 673
AluBI	AGCT	8 cut(s)	137, 323, 352, 566, 737, 745, 905, 937
AluI	AGCT	8 cut(s)	137, 323, 352, 566, 737, 745, 905, 937
AlwI	GGATC	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	889
AoxI	GGCC	4 cut(s)	303, 414, 468, 820
ApeKI	GCWGC	8 cut(s)	104, 110, 113, 116, 119, 548, 734, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	2 cut(s)	468, 820
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	889
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	2 cut(s)	565, 891
BbvI	GCAGC	8 cut(s)	116, 122, 125, 128, 131, 535, 746, 772
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	493
BfaI	CTAG	2 cut(s)	606, 797
BfmI	CTRYAG	1 cut(s)	324
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	9 cut(s)	105, 108, 111, 114, 117, 120, 549, 735, 786
BlsI	GCNGC	9 cut(s)	106, 109, 112, 115, 118, 121, 550, 736, 787
Bme1390I	CCNGG	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	889
BmgT120I	GGNCC	2 cut(s)	468, 820
BmiI	GGNNCC	2 cut(s)	469, 802
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	725, 823
BpiI	GAAGAC	2 cut(s)	565, 891
BpmI	CTGGAG	1 cut(s)	761
BpuEI	CTTGAG	2 cut(s)	191, 968
BpuMI	CCSGG	1 cut(s)	493
BsaJI	CCNNGG	3 cut(s)	29, 227, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	5 cut(s)	346, 465, 466, 498, 853
Bse118I	RCCGGY	1 cut(s)	301
Bse3DI	GCAATG	2 cut(s)	129, 351
BseDI	CCNNGG	3 cut(s)	29, 227, 644
BseLI	CCNNNNNNNGG	5 cut(s)	346, 465, 466, 498, 853
BseMI	GCAATG	2 cut(s)	129, 351
BseMII	CTCAG	4 cut(s)	545, 683, 714, 861
BseRI	GAGGAG	2 cut(s)	209, 788
BseXI	GCAGC	8 cut(s)	116, 122, 125, 128, 131, 535, 746, 772
BseYI	CCCAGC	2 cut(s)	340, 677
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	4 cut(s)	305, 416, 470, 822
BsiHKCI	CYCGRG	1 cut(s)	889
BsiSI	CCGG	2 cut(s)	302, 493
BslI	CCNNNNNNNGG	5 cut(s)	346, 465, 466, 498, 853
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	305, 416, 470, 822
BsoBI	CYCGRG	1 cut(s)	889
Bsp143I	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	2 cut(s)	107, 174
BspANI	GGCC	4 cut(s)	305, 416, 470, 822
BspCNI	CTCAG	4 cut(s)	546, 684, 715, 862
BspLI	GGNNCC	2 cut(s)	469, 802
BspPI	GGATC	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	129, 351
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	29, 227, 644
BssMI	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	227, 644
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	5 cut(s)	30, 79, 450, 475, 531
BstC8I	GCNNGC	2 cut(s)	303, 747
BstDEI	CTNAG	5 cut(s)	554, 567, 692, 723, 870
BstDSI	CCRYGG	2 cut(s)	29, 227
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	6 cut(s)	48, 182, 196, 573, 643, 946
BstMBI	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 113, 116, 119, 125, 134, 911
BstNSI	RCATGY	2 cut(s)	411, 439
BstSCI	CCNGG	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	8 cut(s)	116, 122, 125, 128, 131, 535, 746, 772
BstV2I	GAAGAC	2 cut(s)	565, 891
BstX2I	RGATCY	1 cut(s)	943
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	4 cut(s)	305, 416, 470, 822
BtgI	CCRYGG	2 cut(s)	29, 227
BtsI	GCAGTG	3 cut(s)	135, 378, 806
BtsIMutI	CAGTG	4 cut(s)	135, 378, 471, 806
Cac8I	GCNNGC	2 cut(s)	303, 747
CfoI	GCGC	1 cut(s)	956
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	468, 820
Csp6I	GTAC	1 cut(s)	844
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	4 cut(s)	228, 408, 436, 653
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	5 cut(s)	554, 567, 692, 723, 870
DpnI	GATC	6 cut(s)	47, 181, 195, 572, 642, 945
DpnII	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
DraI	TTTAAA	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	608
EaeI	YGGCCR	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	227, 644
Eco88I	CYCGRG	1 cut(s)	889
EcoT14I	CCWWGG	2 cut(s)	227, 644
ErhI	CCWWGG	2 cut(s)	227, 644
FaeI	CATG	4 cut(s)	231, 411, 439, 656
FatI	CATG	4 cut(s)	227, 407, 435, 652
FauNDI	CATATG	1 cut(s)	580
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	9 cut(s)	105, 108, 111, 114, 117, 120, 549, 735, 786
Fsp4HI	GCNGC	9 cut(s)	105, 108, 111, 114, 117, 120, 549, 735, 786
FspBI	CTAG	2 cut(s)	606, 797
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	9 cut(s)	105, 108, 111, 114, 117, 120, 549, 735, 786
GsaI	CCCAGC	2 cut(s)	344, 681
GsuI	CTGGAG	1 cut(s)	761
HaeIII	GGCC	4 cut(s)	305, 416, 470, 822
HapII	CCGG	2 cut(s)	302, 493
HhaI	GCGC	1 cut(s)	956
Hin1II	CATG	4 cut(s)	231, 411, 439, 656
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	5 cut(s)	274, 336, 575, 764, 887
HpaII	CCGG	2 cut(s)	302, 493
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	4 cut(s)	82, 213, 378, 523
Hpy188I	TCNGA	6 cut(s)	100, 193, 362, 555, 693, 871
Hpy188III	TCNNGA	5 cut(s)	666, 740, 830, 891, 947
Hpy8I	GTNNAC	4 cut(s)	82, 213, 378, 523
HpyAV	CCTTC	3 cut(s)	667, 775, 872
HpyCH4III	ACNGT	5 cut(s)	30, 79, 450, 475, 531
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	383, 602, 788, 811, 983
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 113, 116, 119, 125, 134, 911
HpyF3I	CTNAG	5 cut(s)	554, 567, 692, 723, 870
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	4 cut(s)	231, 411, 439, 656
HspAI	GCGC	1 cut(s)	954
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
LmnI	GCTCC	6 cut(s)	320, 349, 589, 742, 800, 911
Lsp1109I	GCAGC	8 cut(s)	116, 122, 125, 128, 131, 535, 746, 772
LweI	GCATC	2 cut(s)	725, 823
MaeI	CTAG	2 cut(s)	606, 797
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	33, 531
MalI	GATC	6 cut(s)	47, 181, 195, 572, 642, 945
MboI	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
MboII	GAAGA	6 cut(s)	145, 236, 570, 624, 790, 896
MfeI	CAATTG	2 cut(s)	768, 915
MflI	RGATCY	1 cut(s)	943
MluCI	AATT	9 cut(s)	197, 279, 329, 509, 540, 636, 768, 915, 973
MlyI	GAGTC	2 cut(s)	758, 881
MmeI	TCCRAC	3 cut(s)	270, 457, 969
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	6 cut(s)	252, 371, 543, 729, 840, 1000
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	302, 493
MspR9I	CCNGG	1 cut(s)	493
MunI	CAATTG	2 cut(s)	768, 915
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	7 cut(s)	110, 113, 116, 119, 125, 134, 911
NaeI	GCCGGC	1 cut(s)	303
NciI	CCSGG	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	4 cut(s)	231, 411, 439, 656
NlaIV	GGNNCC	2 cut(s)	469, 802
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	2 cut(s)	411, 439
PciI	ACATGT	1 cut(s)	407
PctI	GAATGC	1 cut(s)	397
PdiI	GCCGGC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	274, 336, 575
PflMI	CCANNNNNTGG	1 cut(s)	853
PkrI	GCNGC	9 cut(s)	106, 109, 112, 115, 118, 121, 550, 736, 787
PleI	GAGTC	2 cut(s)	758, 881
PpsI	GAGTC	2 cut(s)	758, 881
PscI	ACATGT	1 cut(s)	407
PshBI	ATTAAT	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	635
Psp1406I	AACGTT	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	340, 677
PspN4I	GGNNCC	2 cut(s)	469, 802
PspPI	GGNCC	2 cut(s)	468, 820
PsuI	RGATCY	1 cut(s)	943
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
SaqAI	TTAA	6 cut(s)	252, 371, 543, 729, 840, 1000
SatI	GCNGC	9 cut(s)	105, 108, 111, 114, 117, 120, 549, 735, 786
Sau3AI	GATC	6 cut(s)	45, 179, 193, 570, 640, 943
Sau96I	GGNCC	2 cut(s)	468, 820
SchI	GAGTC	2 cut(s)	758, 881
ScrFI	CCNGG	1 cut(s)	493
SfaNI	GCATC	2 cut(s)	725, 823
SfcI	CTRYAG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	206, 947
SmoI	CTYRAG	2 cut(s)	206, 947
Sse9I	AATT	9 cut(s)	197, 279, 329, 509, 540, 636, 768, 915, 973
SsiI	CCGC	2 cut(s)	107, 174
SspMI	CTAG	2 cut(s)	606, 797
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	2 cut(s)	227, 644
TaaI	ACNGT	5 cut(s)	30, 79, 450, 475, 531
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	6 cut(s)	66, 222, 258, 573, 667, 829
TasI	AATT	9 cut(s)	197, 279, 329, 509, 540, 636, 768, 915, 973
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	274, 336, 575
Tru1I	TTAA	6 cut(s)	252, 371, 543, 729, 840, 1000
Tru9I	TTAA	6 cut(s)	252, 371, 543, 729, 840, 1000
TscAI	CASTG	4 cut(s)	135, 385, 478, 813
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	8 cut(s)	104, 110, 113, 116, 119, 548, 734, 785
Tsp45I	GTSAC	1 cut(s)	33
TspRI	CASTG	4 cut(s)	135, 385, 478, 813
Van91I	CCANNNNNTGG	1 cut(s)	853
VspI	ATTAAT	1 cut(s)	543
XceI	RCATGY	2 cut(s)	411, 439
XspI	CTAG	2 cut(s)	606, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.