Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Reverse (-)

27787614 .. 27790365

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCAGGTATGATGGGAGATACAAAATTGAGATTCCCAGCAATGGAGCTTCTGATCGGTAATGCCTTAATGTTGACTACACCTTTGAAAGCTTTGGCAGAAACATGTGAGGCCGACAACTCTTTTTTCAACATGCCTCTGCTGCTATCCGTTGCCCTTGTAGGGGCCACTGTTGGTGGGCTGGTTGCTCGTCAAAGGAAAGGGGAATTACAACGAGTGAATGAACAGTTACGACAAATTAATGCTGCTCTGAGAAGACAAGCTAAGATCGAATCATATGCTCCCGGTTTGAGTTATGCGCCTAGTGGAAGAATACCAGAGAGCGAGGTTATAATTGATCCAAGGAAGCATGAGTTGATTTCTCGATTGAAGGCTGGGAAAAACTTTCTGAGAAATCAAGAACCACAGAAAGCAACTATTGAGTTTAAGGCAGCTTTGGAGCTTGCTCAAAGTTTGAAGGACTCAATTGAAGAGAAGAAGGCTGCAAGGGGTCTAGGAGCCTCACTACAAAGACAGGGCCAGTATCGAGATGCCATTAAGTACCATTCTATGGTTTTGGCAATCTCTGAGCGAGAAGGAGAAGACTCTGGAAACACTGAAGCTTATGGAGCAATTGCTGATTGTTATACTGAGCTTGGAGATCTTGAGAGTGCAGGGAAGTACTATGATAATTATATTGCTAGGTTGGAGCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

233

Amino Acids

25.59

Weight (kDa)

6.23

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	128 - 190	6.2e-07	Tetratricopeptide repeat
TPR_12	PF13424	161 - 229	6.5e-10	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	550
AclWI	GGATC	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	2 cut(s)	542, 662
AfiI	CCNNNNNNNGG	4 cut(s)	43, 162, 163, 550
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	5 cut(s)	88, 130, 370, 457, 470
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	7 cut(s)	49, 92, 263, 434, 442, 602, 634
AluI	AGCT	7 cut(s)	49, 92, 263, 434, 442, 602, 634
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	3 cut(s)	111, 165, 517
ApeKI	GCWGC	4 cut(s)	142, 245, 431, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	165, 517
AsuC2I	CCSGG	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	262, 588
BbvI	GCAGC	4 cut(s)	129, 232, 443, 469
BccI	CCATC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	4 cut(s)	303, 494, 681, 697
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	4 cut(s)	143, 246, 432, 483
BlsI	GCNGC	4 cut(s)	144, 247, 433, 484
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	6, 285
BmgT120I	GGNCC	2 cut(s)	165, 517
BmiI	GGNNCC	2 cut(s)	166, 499
BmrFI	CCNGG	2 cut(s)	6, 285
BmsI	GCATC	1 cut(s)	520
BpiI	GAAGAC	2 cut(s)	262, 588
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 162, 163, 550
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	4 cut(s)	43, 162, 163, 550
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	4 cut(s)	242, 380, 558, 621
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	4 cut(s)	129, 232, 443, 469
BseYI	CCCAGC	2 cut(s)	37, 374
BsgI	GTGCAG	1 cut(s)	672
BshFI	GGCC	3 cut(s)	113, 167, 519
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	43, 162, 163, 550
BsnI	GGCC	3 cut(s)	113, 167, 519
Bsp143I	GATC	4 cut(s)	54, 267, 337, 640
BspANI	GGCC	3 cut(s)	113, 167, 519
BspCNI	CTCAG	4 cut(s)	243, 381, 559, 622
BspLI	GGNNCC	2 cut(s)	166, 499
BspPI	GGATC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	4 cut(s)	54, 267, 337, 640
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	172, 228
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	5 cut(s)	251, 264, 389, 567, 630
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	4 cut(s)	57, 270, 340, 643
BstMBI	GATC	4 cut(s)	54, 267, 337, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 608
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	2 cut(s)	108, 136
BstSCI	CCNGG	2 cut(s)	4, 283
BstV1I	GCAGC	4 cut(s)	129, 232, 443, 469
BstV2I	GAAGAC	2 cut(s)	262, 588
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	113, 167, 519
BtsIMutI	CAGTG	2 cut(s)	168, 594
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	165, 517
Csp6I	GTAC	2 cut(s)	541, 661
CviAII	CATG	3 cut(s)	105, 133, 350
CviQI	GTAC	2 cut(s)	541, 661
DdeI	CTNAG	5 cut(s)	251, 264, 389, 567, 630
DpnI	GATC	4 cut(s)	56, 269, 339, 642
DpnII	GATC	4 cut(s)	54, 267, 337, 640
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	108, 136, 353
FatI	CATG	3 cut(s)	104, 132, 349
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	143, 246, 432, 483
Fsp4HI	GCNGC	4 cut(s)	143, 246, 432, 483
FspBI	CTAG	4 cut(s)	303, 494, 681, 697
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	143, 246, 432, 483
GsaI	CCCAGC	2 cut(s)	41, 378
HaeIII	GGCC	3 cut(s)	113, 167, 519
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	108, 136, 353
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	2 cut(s)	90, 600
HinfI	GANTC	4 cut(s)	33, 272, 461, 584
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	4 cut(s)	54, 252, 390, 568
Hpy188III	TCNNGA	5 cut(s)	363, 398, 527, 588, 644
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	364, 451, 472, 569
HpyCH4III	ACNGT	2 cut(s)	172, 228
HpyCH4V	TGCA	2 cut(s)	485, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 608
HpyF3I	CTNAG	5 cut(s)	251, 264, 389, 567, 630
Hsp92II	CATG	3 cut(s)	108, 136, 353
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	4 cut(s)	54, 267, 337, 640
LmnI	GCTCC	6 cut(s)	46, 286, 439, 497, 608, 688
Lsp1109I	GCAGC	4 cut(s)	129, 232, 443, 469
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	4 cut(s)	303, 494, 681, 697
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	4 cut(s)	56, 269, 339, 642
MboI	GATC	4 cut(s)	54, 267, 337, 640
MboII	GAAGA	5 cut(s)	267, 321, 482, 487, 593
MfeI	CAATTG	2 cut(s)	465, 612
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	7 cut(s)	26, 206, 237, 333, 465, 612, 670
MlyI	GAGTC	2 cut(s)	455, 578
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	4 cut(s)	103, 147, 319, 511
MseI	TTAA	4 cut(s)	68, 240, 426, 537
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	6, 285
MunI	CAATTG	2 cut(s)	465, 612
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	142, 608
NciI	CCSGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	4 cut(s)	54, 267, 337, 640
NlaIII	CATG	3 cut(s)	108, 136, 353
NlaIV	GGNNCC	2 cut(s)	166, 499
NspI	RCATGY	2 cut(s)	108, 136
PciI	ACATGT	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	33, 272
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	144, 247, 433, 484
PleI	GAGTC	2 cut(s)	455, 578
PpsI	GAGTC	2 cut(s)	455, 578
PscI	ACATGT	1 cut(s)	104
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	2 cut(s)	37, 374
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	166, 499
PspPI	GGNCC	2 cut(s)	165, 517
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	2 cut(s)	542, 662
RsaNI	GTAC	2 cut(s)	541, 661
SaqAI	TTAA	4 cut(s)	68, 240, 426, 537
SatI	GCNGC	4 cut(s)	143, 246, 432, 483
Sau3AI	GATC	4 cut(s)	54, 267, 337, 640
Sau96I	GGNCC	2 cut(s)	165, 517
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	2 cut(s)	455, 578
ScrFI	CCNGG	2 cut(s)	6, 285
SfaNI	GCATC	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	7 cut(s)	26, 206, 237, 333, 465, 612, 670
SspMI	CTAG	4 cut(s)	303, 494, 681, 697
StyD4I	CCNGG	2 cut(s)	4, 283
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	172, 228
TaqI	TCGA	3 cut(s)	270, 364, 526
TasI	AATT	7 cut(s)	26, 206, 237, 333, 465, 612, 670
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	2 cut(s)	33, 272
Tru1I	TTAA	4 cut(s)	68, 240, 426, 537
Tru9I	TTAA	4 cut(s)	68, 240, 426, 537
TscAI	CASTG	2 cut(s)	175, 601
TseI	GCWGC	4 cut(s)	142, 245, 431, 482
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	175, 601
Van91I	CCANNNNNTGG	1 cut(s)	550
VspI	ATTAAT	1 cut(s)	240
XceI	RCATGY	2 cut(s)	108, 136
XspI	CTAG	4 cut(s)	303, 494, 681, 697
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.