Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

5188241 .. 5189836

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGTCGTTACTCGATTCCGTCACCGTGACCCGCGTGTTTTCTCTGCCGATTGCGGCTTCGGTCTCGTCTTCTTCAGCTGCTCCGTCGGTTTCACGACGCCGGATTTCTCCCGCCAGGTTTCTGGAATTCAGAGGTTTGAAGTCTTCGCGGAGTTTGGTGACTCAGTCGGCCAGTCTGGGTGCGAATCGTAGAACCAGAATCGCTCGCGGTGGACGAATCGCCTGTGAGGCTCAGGACACCACTGCCGCCGCCGTCGAAGTACCAAATCTGTCTGATTCAGAATGGCAAACAAAGGTTCTGGAATCAGATGTCCCAGTTCTGGTCGAGTTCTGGGCACCATGGTGTGGACCTTGCCGTATGATTCACCCCATAGTTGACCAGCTAGCCAAAGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACTGACGAGAGCCCAAATACAGCAAACCGTTACGGGATACGAAGCGTTCCAACAGTAATCATCTTCAAAGGCGGTGAGAAGAAAGATAGCATCATTGGAGCTGTGCCTAGAGAGACGTTGGAGAAAACTATAGAAAGATTCTTGGTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010319 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

193

Amino Acids

21.17

Weight (kDa)

9.62

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	89 - 188	1e-30	Thioredoxin
Thioredoxin_2	PF13098	105 - 186	2.6e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccII	CGCG	3 cut(s)	36, 151, 210
AciI	CCGC	8 cut(s)	34, 56, 114, 151, 210, 249, 252, 501
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	128, 413
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	5, 100
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	322, 347
AgsI	TTSAA	3 cut(s)	142, 412, 496
AjnI	CCWGG	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	80, 385, 530
AluI	AGCT	3 cut(s)	80, 385, 530
Alw26I	GTCTC	2 cut(s)	70, 536
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	128, 413
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	16, 172, 359, 515
AsuNHI	GCTAGC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	443
BbsI	GAAGAC	2 cut(s)	63, 138
BbvI	GCAGC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	239, 342
BciT130I	CCWGG	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	70, 536
BfaI	CTAG	2 cut(s)	386, 537
BfmI	CTRYAG	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	4 cut(s)	57, 81, 249, 252
BlsI	GCNGC	4 cut(s)	58, 82, 250, 253
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	528
BmtI	GCTAGC	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	311
BpiI	GAAGAC	2 cut(s)	63, 138
Bpu10I	CCTNAGC	1 cut(s)	234
BsaHI	GRCGYC	2 cut(s)	5, 100
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 347
Bse1I	ACTGG	2 cut(s)	174, 317
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	322, 347
BseMII	CTCAG	2 cut(s)	179, 248
BseNI	ACTGG	2 cut(s)	174, 317
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	67
Bsh1236I	CGCG	3 cut(s)	36, 151, 210
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	322, 347
BsmAI	GTCTC	2 cut(s)	70, 536
BsmBI	CGTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	340, 443
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	8 cut(s)	34, 56, 114, 151, 210, 249, 252, 501
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	178, 247
BspFNI	CGCG	3 cut(s)	36, 151, 210
BspLI	GGNNCC	1 cut(s)	339
BspOI	GCTAGC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	174, 317
BssECI	CCNNGG	1 cut(s)	341
BssNI	GRCGYC	2 cut(s)	5, 100
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	28, 458, 484
BstACI	GRCGYC	2 cut(s)	5, 100
BstC8I	GCNNGC	2 cut(s)	208, 387
BstDEI	CTNAG	2 cut(s)	165, 234
BstDSI	CCRYGG	1 cut(s)	341
BstFNI	CGCG	3 cut(s)	36, 151, 210
BstMAI	GTCTC	2 cut(s)	70, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	3 cut(s)	36, 151, 210
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	2 cut(s)	63, 138
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 429
Cac8I	GCNNGC	2 cut(s)	208, 387
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	8 cut(s)	59, 80, 173, 233, 385, 389, 441, 530
CviKI_1	RGCY	8 cut(s)	59, 80, 173, 233, 385, 389, 441, 530
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	165, 234
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	1 cut(s)	345
FaiI	YATR	4 cut(s)	343, 362, 374, 560
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	341
FauI	CCCGC	2 cut(s)	41, 121
Fnu4HI	GCNGC	4 cut(s)	57, 81, 249, 252
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	4 cut(s)	57, 81, 249, 252
FspBI	CTAG	2 cut(s)	386, 537
GluI	GCNGC	4 cut(s)	57, 81, 249, 252
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	2 cut(s)	5, 100
Hin1II	CATG	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	9 cut(s)	17, 163, 187, 201, 219, 278, 305, 364, 567
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	4 cut(s)	16, 172, 359, 515
Hpy166II	GTNNAC	3 cut(s)	215, 350, 379
Hpy188I	TCNGA	4 cut(s)	134, 277, 283, 310
Hpy188III	TCNNGA	4 cut(s)	96, 125, 236, 302
Hpy8I	GTNNAC	3 cut(s)	215, 350, 379
Hpy99I	CGWCG	4 cut(s)	10, 91, 102, 260
HpyCH4III	ACNGT	3 cut(s)	28, 458, 484
HpyCH4IV	ACGT	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	165, 234
HpySE526I	ACGT	1 cut(s)	545
Hsp92I	GRCGYC	2 cut(s)	5, 100
Hsp92II	CATG	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	88, 527
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	2 cut(s)	386, 537
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	5 cut(s)	9, 22, 28, 160, 458
MboII	GAAGA	5 cut(s)	63, 66, 138, 484, 520
MhlI	GDGCHC	2 cut(s)	340, 443
MluCI	AATT	2 cut(s)	128, 413
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	503, 528
MnlI	CCTC	2 cut(s)	128, 223
MslI	CAYNNNNRTG	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	3 cut(s)	36, 151, 210
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	341
NheI	GCTAGC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	3 cut(s)	22, 28, 160
OliI	CACNNNNGTG	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PfeI	GAWTC	8 cut(s)	17, 187, 201, 219, 278, 305, 364, 567
PflFI	GACNNNGTC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	58, 82, 250, 253
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	350
PsyI	GACNNNGTC	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	343
SatI	GCNGC	4 cut(s)	57, 81, 249, 252
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	340, 443
SetI	ASST	8 cut(s)	82, 122, 139, 300, 355, 387, 532, 548
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	343
Sse9I	AATT	2 cut(s)	128, 413
SsiI	CCGC	8 cut(s)	34, 56, 114, 151, 210, 249, 252, 501
SspMI	CTAG	2 cut(s)	386, 537
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	3 cut(s)	28, 458, 484
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	4 cut(s)	15, 258, 327, 576
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	128, 413
TauI	GCSGC	3 cut(s)	59, 251, 254
TfiI	GAWTC	8 cut(s)	17, 187, 201, 219, 278, 305, 364, 567
TscAI	CASTG	2 cut(s)	250, 436
TseFI	GTSAC	3 cut(s)	22, 28, 160
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	3 cut(s)	22, 28, 160
TspGWI	ACGGA	2 cut(s)	10, 75
TspRI	CASTG	2 cut(s)	250, 436
Tth111I	GACNNNGTC	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	128, 413
XspI	CTAG	2 cut(s)	386, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.