Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040826.1

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

261 .. 587

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040826.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggccaccgtccttgaatccatcgtcattcctcgctcctccgctctgccttcacctactctctctccgatcgccgcctcctcggtttcttccctcaccggccgccgtggattgcctcactactccggcctcaaggtcagctccgctcttcagacgactcgctctgtcggatctctcagctacggtcccgcttccggactcgctcctcgtcgccggcgtggtctcgttctctgcgaggcccaggacaccgccgtcggaggtcagtttcgtcttttcaacttctgttctcccgtttgtgcaagtgtttggattctttttacatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

108

Amino Acids

11.36

Weight (kDa)

10.41

Isoelectric Point (pI)

71.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccBSI	CCGCTC	2 cut(s)	44, 146
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 249
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	2 cut(s)	3, 100
AcuI	CTGAAG	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	17, 277
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	141, 180
AluI	AGCT	2 cut(s)	141, 180
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	4 cut(s)	3, 100, 127, 237
AspS9I	GGNCC	2 cut(s)	185, 238
AsuHPI	GGTGA	2 cut(s)	45, 88
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	90, 236
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	75, 103
BlsI	GCNGC	2 cut(s)	76, 104
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	185, 238
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	3 cut(s)	81, 106, 240
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	2 cut(s)	98, 213
BseAI	TCCGGA	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	81, 106, 240
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	28, 70, 195
BseX3I	CGGCCG	1 cut(s)	100
Bsh1285I	CGRYCG	2 cut(s)	72, 103
BshFI	GGCC	4 cut(s)	5, 102, 129, 239
BsiEI	CGRYCG	2 cut(s)	72, 103
BsiSI	CCGG	4 cut(s)	99, 126, 195, 214
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	5, 102, 129, 239
Bso31I	GGTCTC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	69, 170
BspACI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 249
BspANI	GGCC	4 cut(s)	5, 102, 129, 239
BspCNI	CTCAG	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	227
BsrBI	CCGCTC	2 cut(s)	44, 146
BsrFI	RCCGGY	2 cut(s)	98, 213
BssAI	RCCGGY	2 cut(s)	98, 213
BssECI	CCNNGG	3 cut(s)	81, 106, 240
BssMI	GATC	2 cut(s)	69, 170
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	10, 185
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	72, 173
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	69, 170
BstMCI	CGRYCG	2 cut(s)	72, 103
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	4 cut(s)	5, 102, 129, 239
BtgI	CCRYGG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	215
Cfr10I	RCCGGY	2 cut(s)	98, 213
Cfr13I	GGNCC	2 cut(s)	185, 238
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviJI	RGCY	6 cut(s)	5, 102, 129, 141, 180, 239
CviKI_1	RGCY	6 cut(s)	5, 102, 129, 141, 180, 239
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	71, 172
DpnII	GATC	2 cut(s)	69, 170
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	3, 100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	185
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	240
FaiI	YATR	1 cut(s)	322
FaqI	GGGAC	1 cut(s)	171
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	75, 103
Fsp4HI	GCNGC	2 cut(s)	75, 103
GluI	GCNGC	2 cut(s)	75, 103
HaeIII	GGCC	4 cut(s)	5, 102, 129, 239
HapII	CCGG	4 cut(s)	99, 126, 195, 214
HinfI	GANTC	4 cut(s)	17, 157, 198, 310
HpaII	CCGG	4 cut(s)	99, 126, 195, 214
HphI	GGTGA	2 cut(s)	45, 88
Hpy188I	TCNGA	4 cut(s)	69, 153, 170, 257
Hpy188III	TCNNGA	1 cut(s)	195
Hpy99I	CGWCG	2 cut(s)	213, 257
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	10, 185
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	213
KroNI	GCCGGC	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	69, 170
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	3 cut(s)	41, 146, 208
LpnPI	CCDG	6 cut(s)	112, 139, 208, 227, 227, 254
MalI	GATC	2 cut(s)	71, 172
MbiI	CCGCTC	2 cut(s)	44, 146
MboI	GATC	2 cut(s)	69, 170
MboII	GAAGA	2 cut(s)	81, 140
MflI	RGATCY	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	151, 192
MmeI	TCCRAC	2 cut(s)	148, 235
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	325
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	99, 126, 195, 214
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NaeI	GCCGGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	69, 170
NgoMIV	GCCGGC	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	2 cut(s)	214, 231
PdiI	GCCGGC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	17, 310
PkrI	GCNGC	2 cut(s)	76, 104
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	2 cut(s)	151, 192
PpsI	GAGTC	2 cut(s)	151, 192
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	185, 238
PsuI	RGATCY	1 cut(s)	170
PvuI	CGATCG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	325
SatI	GCNGC	2 cut(s)	75, 103
Sau3AI	GATC	2 cut(s)	69, 170
Sau96I	GGNCC	2 cut(s)	185, 238
SchI	GAGTC	2 cut(s)	151, 192
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	5 cut(s)	58, 138, 143, 182, 262
SgrAI	CRCCGGYG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 249
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	10, 185
TauI	GCSGC	2 cut(s)	77, 105
TfiI	GAWTC	2 cut(s)	17, 310
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.