Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Reverse (-)

13242529 .. 13245076

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTACCGTCCTTGAATCCATCGTCGTTCCTCGCTCCTCCGCTCTCCCTTCGGCTTCTCTTTCCCCGATCGCCGCCTCCTCCGTTTCTTCCCGCACCGGCCGCCTCGGATTGCCTCACTTCACTGGCCTCAAGGTCAGGTCCGCTCTTCAGACCTCTCGCTCTGTTGGATCGCTGACTTACGGCCCCGCTCGTCGCCGCCGGGGACTCGTCGTCTGCGAGGCTCAGGACACCGCCGTTGGAGTGCCTGCTGTTTCTGATGCAACATGGCAGTCACTTGTCCTCGATGCTGAATTACCGGTTTTGGTTGAATTCTGGGCGCCATGGTGTGGTCCATGCCGTATGATCCACCCTATCATTGATGAACTGGCAAAGCAATATGCTGGTAAGCTCAAGTGTTACAAAGTGAATACCGATGAGAGTGCTTCAGTAGCAACCCGATATGGGATCCGAAGCATCCCCACTGTCATCATATTCAAGGGCGGTGAGAAAAAAGATGCAGTTATTGGGGCCGTTCCCAAATCCACATTGACCACCAGCATCGAAAAGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

186

Amino Acids

19.73

Weight (kDa)

9.57

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	84 - 182	7.7e-30	Thioredoxin
Thioredoxin_2	PF13098	98 - 178	1.4e-08	Thioredoxin-like domain
Thioredoxin_9	PF14595	105 - 175	9.8e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	3 cut(s)	44, 146, 191
AciI	CCGC	9 cut(s)	42, 75, 94, 103, 144, 189, 199, 234, 483
AclWI	GGATC	4 cut(s)	178, 340, 442, 455
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	134, 411
AcyI	GRCGYC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	329, 444
AgeI	ACCGGT	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	17, 311, 478
AhdI	GACNNNNNGTC	1 cut(s)	212
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
AlwI	GGATC	4 cut(s)	178, 340, 442, 455
AoxI	GGCC	4 cut(s)	100, 127, 184, 510
ApoI	RAATTY	1 cut(s)	311
AsiGI	ACCGGT	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	4 cut(s)	141, 185, 332, 510
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	2 cut(s)	141, 332
BamHI	GGATCC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	319
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	4 cut(s)	199, 221, 324, 497
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BcnI	CCSGG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	3 cut(s)	75, 103, 199
BlsI	GCNGC	3 cut(s)	76, 104, 200
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	2 cut(s)	141, 332
BmeRI	GACNNNNNGTC	1 cut(s)	212
BmgT120I	GGNCC	4 cut(s)	141, 185, 332, 510
BmiI	GGNNCC	4 cut(s)	187, 321, 449, 511
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	5 cut(s)	250, 277, 465, 487, 549
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	116, 377
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	106, 202, 323
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 444
Bse118I	RCCGGY	2 cut(s)	98, 298
Bse1I	ACTGG	2 cut(s)	130, 372
BseDI	CCNNGG	3 cut(s)	106, 202, 323
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	329, 444
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	130, 372
BseRI	GAGGAG	2 cut(s)	28, 70
BseX3I	CGGCCG	1 cut(s)	100
Bsh1285I	CGRYCG	2 cut(s)	72, 103
BshFI	GGCC	4 cut(s)	102, 129, 186, 512
BshNI	GGYRCC	1 cut(s)	319
BshTI	ACCGGT	1 cut(s)	298
BsiEI	CGRYCG	2 cut(s)	72, 103
BsiSI	CCGG	3 cut(s)	99, 202, 299
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	329, 444
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	4 cut(s)	102, 129, 186, 512
Bsp143I	GATC	4 cut(s)	69, 170, 345, 447
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	9 cut(s)	42, 75, 94, 103, 144, 189, 199, 234, 483
BspANI	GGCC	4 cut(s)	102, 129, 186, 512
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	187, 321, 449, 511
BspPI	GGATC	4 cut(s)	178, 340, 442, 455
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	319
BsrBI	CCGCTC	3 cut(s)	44, 146, 191
BsrFI	RCCGGY	2 cut(s)	98, 298
BsrI	ACTGG	2 cut(s)	130, 372
BssAI	RCCGGY	2 cut(s)	98, 298
BssECI	CCNNGG	3 cut(s)	106, 202, 323
BssMI	GATC	4 cut(s)	69, 170, 345, 447
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	10, 466
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	4 cut(s)	72, 173, 348, 450
BstMBI	GATC	4 cut(s)	69, 170, 345, 447
BstMCI	CGRYCG	2 cut(s)	72, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 431
BstSCI	CCNGG	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	4 cut(s)	102, 129, 186, 512
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	123, 462
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	2 cut(s)	98, 298
Cfr13I	GGNCC	4 cut(s)	141, 185, 332, 510
CspAI	ACCGGT	1 cut(s)	298
CviAII	CATG	3 cut(s)	267, 324, 336
CviJI	RGCY	8 cut(s)	5, 56, 102, 129, 186, 224, 391, 512
CviKI_1	RGCY	8 cut(s)	5, 56, 102, 129, 186, 224, 391, 512
DdeI	CTNAG	1 cut(s)	225
DinI	GGCGCC	1 cut(s)	321
DpnI	GATC	4 cut(s)	71, 172, 347, 449
DpnII	GATC	4 cut(s)	69, 170, 345, 447
DriI	GACNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	141, 332
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	134, 411
EcoRI	GAATTC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	323
EgeI	GGCGCC	1 cut(s)	321
EheI	GGCGCC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	3 cut(s)	270, 327, 339
FaiI	YATR	7 cut(s)	268, 325, 337, 344, 381, 444, 473
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	3 cut(s)	266, 323, 335
FauI	CCCGC	2 cut(s)	101, 196
Fnu4HI	GCNGC	3 cut(s)	75, 103, 199
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	3 cut(s)	75, 103, 199
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	3 cut(s)	75, 103, 199
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	4 cut(s)	102, 129, 186, 512
HapII	CCGG	3 cut(s)	99, 202, 299
HhaI	GCGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	270, 327, 339
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	2 cut(s)	17, 207
HpaII	CCGG	3 cut(s)	99, 202, 299
HphI	GGTGA	1 cut(s)	497
Hpy188I	TCNGA	4 cut(s)	110, 153, 259, 452
Hpy188III	TCNNGA	1 cut(s)	227
Hpy99I	CGWCG	3 cut(s)	29, 198, 215
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	10, 466
HpyCH4V	TGCA	2 cut(s)	263, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 431
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	270, 327, 339
HspAI	GCGC	1 cut(s)	320
KasI	GGCGCC	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	69, 170, 345, 447
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	41
LweI	GCATC	5 cut(s)	250, 277, 465, 487, 549
MaeIII	GTNAC	2 cut(s)	273, 398
MalI	GATC	4 cut(s)	71, 172, 347, 449
MbiI	CCGCTC	3 cut(s)	44, 146, 191
MboI	GATC	4 cut(s)	69, 170, 345, 447
MboII	GAAGA	2 cut(s)	81, 140
MflI	RGATCY	1 cut(s)	447
MluCI	AATT	2 cut(s)	293, 311
Mly113I	GGCGCC	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	148, 220
MspI	CCGG	3 cut(s)	99, 202, 299
MspR9I	CCNGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	102, 431
NarI	GGCGCC	1 cut(s)	320
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	4 cut(s)	69, 170, 345, 447
NlaIII	CATG	3 cut(s)	270, 327, 339
NlaIV	GGNNCC	4 cut(s)	187, 321, 449, 511
NmuCI	GTSAC	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	76, 104, 200
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	1 cut(s)	201
PluTI	GGCGCC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	201
PspN4I	GGNNCC	4 cut(s)	187, 321, 449, 511
PspPI	GGNCC	4 cut(s)	141, 185, 332, 510
PsuI	RGATCY	1 cut(s)	447
PvuI	CGATCG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	3 cut(s)	75, 103, 199
Sau3AI	GATC	4 cut(s)	69, 170, 345, 447
Sau96I	GGNCC	4 cut(s)	141, 185, 332, 510
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	4 cut(s)	138, 143, 158, 393
SfaNI	GCATC	5 cut(s)	250, 277, 465, 487, 549
SfoI	GGCGCC	1 cut(s)	321
SinI	GGWCC	2 cut(s)	141, 332
SmlI	CTYRAG	2 cut(s)	131, 392
SmoI	CTYRAG	2 cut(s)	131, 392
Sse9I	AATT	2 cut(s)	293, 311
SsiI	CCGC	9 cut(s)	42, 75, 94, 103, 144, 189, 199, 234, 483
SspDI	GGCGCC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	10, 466
TaqI	TCGA	2 cut(s)	285, 543
TasI	AATT	2 cut(s)	293, 311
TauI	GCSGC	3 cut(s)	77, 105, 201
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	2 cut(s)	130, 469
TseFI	GTSAC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	130, 469
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	141, 332
XapI	RAATTY	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.