Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Reverse (-)

62626114 .. 62626329

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGATCCACCCTATAATTGATGAACTGGAAAAGCAATATGCTGGGAAGCTCAAATGTTACAAAGTAAGCACCGATGAGAGTGCTTCAGTTGCAACCCGATATGGGATCCGAAGCATCCCCACTGTCATCTTATTCAAGGATGGTGAGAAAAAAGAAGCAGTTATTGGGGCTGTTCCCAAATCCACATTAACCACCAGCATAGAAAAGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

71

Amino Acids

7.86

Weight (kDa)

8.76

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	1 - 68	1.3e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	100, 113
AcuI	CTGAAG	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AlwI	GGATC	2 cut(s)	100, 113
AsuHPI	GGTGA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	105
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BmiI	GGNNCC	1 cut(s)	107
BmsI	GCATC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	114, 145
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	3, 105
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	100, 113
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	3, 105
Bst4CI	ACNGT	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	114, 145
BstKTI	GATC	2 cut(s)	6, 108
BstMBI	GATC	2 cut(s)	3, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	114, 145
BtsIMutI	CAGTG	1 cut(s)	120
CviJI	RGCY	2 cut(s)	49, 170
CviKI_1	RGCY	2 cut(s)	49, 170
DpnI	GATC	2 cut(s)	5, 107
DpnII	GATC	2 cut(s)	3, 105
Eco57I	CTGAAG	1 cut(s)	69
FaiI	YATR	4 cut(s)	14, 39, 102, 200
FokI	GGATG	2 cut(s)	101, 152
GsaI	CCCAGC	1 cut(s)	45
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	3, 105
LpnPI	CCDG	3 cut(s)	11, 27, 208
LweI	GCATC	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	5, 107
MboI	GATC	2 cut(s)	3, 105
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	1 cut(s)	15
MseI	TTAA	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	2 cut(s)	3, 105
NlaIV	GGNNCC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	3, 105
SetI	ASST	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	123
SgeI	CNNG	5 cut(s)	38, 54, 108, 148, 207
Sse9I	AATT	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.