Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Reverse (-)

27638017 .. 27640189

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCACCGTCCTTGAATCCATCGTCATTCCTCGCTCCTCCGCTCTGCCTTCACCTACTCTCTCTCCGATCGCCGCCTCCTCGGTTTCTTCCCTCACCGGCCGCCGTGGATTGCCTCACTACTCCGGCCTCAAGGTCAGCTCCGCTCTTCAGACGACTCGCTCTGTCGGATCTCTCAGCTACGGTCCCGCTTCCGGACTCGCTCCTCGTCGCCGGCGTGGTCTCGTTCTCTGCGAGGCCCAGGACACCGCCGTCGGAGTGCCTGCTGTTTCTGATGCAACATGGCAGTCACTTGTCCTTGATGCTGAATTACCTGTTTTGGTTGAATTCTGGGCCCCATGGTGTGGTCCATGTCGTATGATCCACCCTATAATTGATGAACTGGCAAAGCAATATGCTGGGAAGCTCAAATGTTACAAAGTAAACACCGATGAGAGTGCTTCAGTTGCAACCCGATATGGGATCCGAAGCATCCCCACTGTCATCTTATTCAAGGATGGTGAGAAAAAAGAAGCAGTTATTGGGGCTGTTCCCAAATCCACATTAACCACCAGCATAGAAAAGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

190

Amino Acids

20.22

Weight (kDa)

9.27

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	89 - 187	2.6e-30	Thioredoxin
Thioredoxin_2	PF13098	103 - 183	8.9e-09	Thioredoxin-like domain
Thioredoxin_9	PF14595	110 - 180	5.6e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccBSI	CCGCTC	2 cut(s)	44, 146
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 249
AclWI	GGATC	4 cut(s)	178, 355, 457, 470
AcoI	YGGCCR	2 cut(s)	3, 100
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	134, 426
AfiI	CCNNNNNNNGG	3 cut(s)	194, 344, 459
AgsI	TTSAA	3 cut(s)	17, 326, 493
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	3 cut(s)	141, 180, 406
AluI	AGCT	3 cut(s)	141, 180, 406
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	4 cut(s)	178, 355, 457, 470
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	5 cut(s)	3, 100, 127, 237, 333
ApaI	GGGCCC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	326
AspS9I	GGNCC	5 cut(s)	185, 238, 333, 334, 347
AsuHPI	GGTGA	3 cut(s)	45, 88, 512
AvaII	GGWCC	2 cut(s)	185, 347
BaeGI	GKGCMC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	337
BccI	CCATC	2 cut(s)	29, 491
BceAI	ACGGC	2 cut(s)	90, 236
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	75, 103
BlsI	GCNGC	2 cut(s)	76, 104
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	2 cut(s)	185, 347
BmgT120I	GGNCC	5 cut(s)	185, 238, 333, 334, 347
BmiI	GGNNCC	4 cut(s)	187, 335, 336, 464
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	3 cut(s)	265, 292, 480
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	4 cut(s)	81, 106, 240, 338
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 344, 459
Bse118I	RCCGGY	2 cut(s)	98, 213
Bse1I	ACTGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	4 cut(s)	81, 106, 240, 338
BseGI	GGATG	2 cut(s)	471, 502
BseLI	CCNNNNNNNGG	3 cut(s)	194, 344, 459
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	3 cut(s)	28, 70, 195
BseSI	GKGCMC	1 cut(s)	337
BseX3I	CGGCCG	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	398
Bsh1285I	CGRYCG	2 cut(s)	72, 103
BshFI	GGCC	5 cut(s)	5, 102, 129, 239, 335
BsiEI	CGRYCG	2 cut(s)	72, 103
BsiSI	CCGG	4 cut(s)	99, 126, 195, 214
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	194, 344, 459
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	5 cut(s)	5, 102, 129, 239, 335
Bso31I	GGTCTC	1 cut(s)	227
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	4 cut(s)	69, 170, 360, 462
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 249
BspANI	GGCC	5 cut(s)	5, 102, 129, 239, 335
BspCNI	CTCAG	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	194
BspLI	GGNNCC	4 cut(s)	187, 335, 336, 464
BspPI	GGATC	4 cut(s)	178, 355, 457, 470
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	227
BsrBI	CCGCTC	2 cut(s)	44, 146
BsrFI	RCCGGY	2 cut(s)	98, 213
BsrI	ACTGG	1 cut(s)	387
BssAI	RCCGGY	2 cut(s)	98, 213
BssECI	CCNNGG	4 cut(s)	81, 106, 240, 338
BssMI	GATC	4 cut(s)	69, 170, 360, 462
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	10, 185, 481
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	215, 264
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	2 cut(s)	106, 338
BstF5I	GGATG	2 cut(s)	471, 502
BstKTI	GATC	4 cut(s)	72, 173, 363, 465
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	69, 170, 360, 462
BstMCI	CGRYCG	2 cut(s)	72, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	170, 462
BstYI	RGATCY	2 cut(s)	170, 462
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	5, 102, 129, 239, 335
BtgI	CCRYGG	2 cut(s)	106, 338
BtsCI	GGATG	2 cut(s)	471, 502
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	215, 264
Cfr10I	RCCGGY	2 cut(s)	98, 213
Cfr13I	GGNCC	5 cut(s)	185, 238, 333, 334, 347
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	3 cut(s)	282, 339, 351
CviJI	RGCY	9 cut(s)	5, 102, 129, 141, 180, 239, 335, 406, 527
CviKI_1	RGCY	9 cut(s)	5, 102, 129, 141, 180, 239, 335, 406, 527
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	4 cut(s)	71, 172, 362, 464
DpnII	GATC	4 cut(s)	69, 170, 360, 462
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	3, 100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	185, 347
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	134, 426
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	285, 342, 354
FaiI	YATR	8 cut(s)	283, 340, 352, 359, 371, 396, 459, 557
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	3 cut(s)	281, 338, 350
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	75, 103
FokI	GGATG	2 cut(s)	458, 509
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	75, 103
GluI	GCNGC	2 cut(s)	75, 103
GsaI	CCCAGC	1 cut(s)	402
HaeIII	GGCC	5 cut(s)	5, 102, 129, 239, 335
HapII	CCGG	4 cut(s)	99, 126, 195, 214
Hin1II	CATG	3 cut(s)	285, 342, 354
HinfI	GANTC	3 cut(s)	17, 157, 198
HpaII	CCGG	4 cut(s)	99, 126, 195, 214
HphI	GGTGA	3 cut(s)	45, 88, 512
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	6 cut(s)	69, 153, 170, 257, 274, 467
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	2 cut(s)	213, 257
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	3 cut(s)	10, 185, 481
HpyCH4V	TGCA	2 cut(s)	278, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	285, 342, 354
Kpn2I	TCCGGA	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	213
KroNI	GCCGGC	1 cut(s)	215
Kzo9I	GATC	4 cut(s)	69, 170, 360, 462
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	3 cut(s)	41, 146, 208
LweI	GCATC	3 cut(s)	265, 292, 480
MaeIII	GTNAC	2 cut(s)	288, 413
MalI	GATC	4 cut(s)	71, 172, 362, 464
MbiI	CCGCTC	2 cut(s)	44, 146
MboI	GATC	4 cut(s)	69, 170, 360, 462
MboII	GAAGA	2 cut(s)	81, 140
MflI	RGATCY	2 cut(s)	170, 462
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	308, 326, 372
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	151, 192
MmeI	TCCRAC	2 cut(s)	148, 235
MnlI	CCTC	9 cut(s)	42, 49, 88, 91, 104, 126, 140, 216, 229
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	99, 126, 195, 214
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	446
NaeI	GCCGGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	4 cut(s)	69, 170, 360, 462
NgoMIV	GCCGGC	1 cut(s)	213
NlaIII	CATG	3 cut(s)	285, 342, 354
NlaIV	GGNNCC	4 cut(s)	187, 335, 336, 464
NmuCI	GTSAC	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	2 cut(s)	214, 231
PdiI	GCCGGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	76, 104
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	2 cut(s)	151, 192
PpsI	GAGTC	2 cut(s)	151, 192
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	4 cut(s)	187, 335, 336, 464
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	5 cut(s)	185, 238, 333, 334, 347
PsuI	RGATCY	2 cut(s)	170, 462
PvuI	CGATCG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	2 cut(s)	75, 103
Sau3AI	GATC	4 cut(s)	69, 170, 360, 462
Sau96I	GGNCC	5 cut(s)	185, 238, 333, 334, 347
SchI	GAGTC	2 cut(s)	151, 192
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	58, 138, 143, 182, 316, 408
SfaNI	GCATC	3 cut(s)	265, 292, 480
SgrAI	CRCCGGYG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	185, 347
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	308, 326, 372
SsiI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 249
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	10, 185, 481
TasI	AATT	3 cut(s)	308, 326, 372
TauI	GCSGC	2 cut(s)	77, 105
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	185, 347
XapI	RAATTY	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.