Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

10841046 .. 10843178

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G183200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCTACAGTCCTCGACTCTCTCGTCGTTCCTCGCTCCTCCGCCCTGCCTTCCTCGGCTGCGCTCTCTCCAATCGCCGCCGCCTCCTCGGTTTCGTCATTGTCCGGCCGCTCTGGATTGCGTCACTACAGAGGCCTCAAGGTGGGGTCCGCTCTCCGAACTCGCTCTATCGGATCGCTGAGTTACGGTCCGGCTGCCGGAGGAGCTCGTCATCGCCGAGGTGGGCTCGTCGTCTGCGAGGCTCAGGACACCGCTGTCGAAGTGCCTCCTGTTACTGATGCAACGTGGCAGTCACTTGTCCTTGAATCCGACTCCCCTGTTTTGGTTGAGTTCTGGGCCCCATGGTGTGGGCCTTGCCGTATGATCCACCCTATAATTGATGAACTGGCAAAGCAATATGCTGGGAAGCTTAAATGCTACAAAGTAAACACTGATGAAGGCGCTGCAATTGCAACCCAATATGGGATTCGAAGCATCCCGACTGTCATCATATTCAAGGGTGGCGAGAAAAAAGATGCAGTTATTGGCGCTGTTCCCAAATCCACATTAACCACCAGCATAGAAAAGTTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

192

Amino Acids

20.08

Weight (kDa)

9.27

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 254
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccBSI	CCGCTC	2 cut(s)	111, 152
AciI	CCGC	6 cut(s)	42, 78, 81, 109, 150, 252
AclWI	GGATC	2 cut(s)	181, 358
AcoI	YGGCCR	1 cut(s)	106
AfiI	CCNNNNNNNGG	5 cut(s)	142, 197, 322, 347, 462
AgsI	TTSAA	2 cut(s)	305, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AluBI	AGCT	2 cut(s)	206, 409
AluI	AGCT	2 cut(s)	206, 409
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	181, 358
AoxI	GGCC	4 cut(s)	106, 133, 336, 350
ApaI	GGGCCC	1 cut(s)	340
ApeKI	GCWGC	3 cut(s)	59, 194, 443
AspLEI	GCGC	3 cut(s)	64, 443, 530
AspS9I	GGNCC	5 cut(s)	147, 188, 336, 337, 350
AsuII	TTCGAA	1 cut(s)	469
AvaII	GGWCC	2 cut(s)	147, 188
BaeGI	GKGCMC	1 cut(s)	340
BanII	GRGCYC	3 cut(s)	208, 228, 340
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	46, 181, 430
BceAI	ACGGC	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	6, 127
BfoI	RGCGCY	2 cut(s)	444, 531
BisI	GCNGC	6 cut(s)	60, 78, 81, 109, 195, 444
BlsI	GCNGC	6 cut(s)	61, 79, 82, 110, 196, 445
Bme18I	GGWCC	2 cut(s)	147, 188
BmgT120I	GGNCC	5 cut(s)	147, 188, 336, 337, 350
BmiI	GGNNCC	3 cut(s)	148, 338, 339
BmsI	GCATC	3 cut(s)	268, 483, 505
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	54, 87, 217, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 197, 322, 347, 462
Bse1I	ACTGG	1 cut(s)	390
BseDI	CCNNGG	4 cut(s)	54, 87, 217, 341
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	5 cut(s)	142, 197, 322, 347, 462
BseMII	CTCAG	2 cut(s)	170, 257
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	3 cut(s)	28, 76, 216
BseSI	GKGCMC	1 cut(s)	340
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	46, 181, 430
BseYI	CCCAGC	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	108, 135, 338, 352
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	3 cut(s)	105, 191, 198
BslI	CCNNNNNNNGG	5 cut(s)	142, 197, 322, 347, 462
BsnI	GGCC	4 cut(s)	108, 135, 338, 352
Bsp119I	TTCGAA	1 cut(s)	469
Bsp120I	GGGCCC	1 cut(s)	336
Bsp1286I	GDGCHC	3 cut(s)	208, 228, 340
Bsp143I	GATC	2 cut(s)	173, 363
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	6 cut(s)	42, 78, 81, 109, 150, 252
BspANI	GGCC	4 cut(s)	108, 135, 338, 352
BspCNI	CTCAG	2 cut(s)	171, 256
BspLI	GGNNCC	3 cut(s)	148, 338, 339
BspPI	GGATC	2 cut(s)	181, 358
BspT104I	TTCGAA	1 cut(s)	469
BsrBI	CCGCTC	2 cut(s)	111, 152
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	4 cut(s)	54, 87, 217, 341
BssMI	GATC	2 cut(s)	173, 363
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	3 cut(s)	10, 188, 484
BstBI	TTCGAA	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	179, 243
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	474
BstH2I	RGCGCY	2 cut(s)	444, 531
BstHHI	GCGC	3 cut(s)	64, 443, 530
BstKTI	GATC	2 cut(s)	176, 366
BstMBI	GATC	2 cut(s)	173, 363
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 449
BstSFI	CTRYAG	2 cut(s)	6, 127
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	3 cut(s)	46, 181, 430
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	108, 135, 338, 352
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	429
CfoI	GCGC	3 cut(s)	64, 443, 530
Cfr13I	GGNCC	5 cut(s)	147, 188, 336, 337, 350
CpoI	CGGWCCG	1 cut(s)	188
CseI	GACGC	1 cut(s)	110
CspI	CGGWCCG	1 cut(s)	188
CviAII	CATG	1 cut(s)	342
DdeI	CTNAG	2 cut(s)	179, 243
DpnI	GATC	2 cut(s)	175, 365
DpnII	GATC	2 cut(s)	173, 363
DrdI	GACNNNNNNGTC	2 cut(s)	23, 254
DseDI	GACNNNNNNGTC	2 cut(s)	23, 254
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	206
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	3 cut(s)	208, 228, 340
Eco47I	GGWCC	2 cut(s)	147, 188
Eco52I	CGGCCG	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	3 cut(s)	208, 228, 340
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	1 cut(s)	345
FaiI	YATR	8 cut(s)	343, 362, 374, 399, 462, 491, 560, 574
FatI	CATG	1 cut(s)	341
Fnu4HI	GCNGC	6 cut(s)	60, 78, 81, 109, 195, 444
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	3 cut(s)	208, 228, 340
Fsp4HI	GCNGC	6 cut(s)	60, 78, 81, 109, 195, 444
GlaI	GCGC	3 cut(s)	63, 442, 529
GluI	GCNGC	6 cut(s)	60, 78, 81, 109, 195, 444
GsaI	CCCAGC	1 cut(s)	405
HaeII	RGCGCY	2 cut(s)	444, 531
HaeIII	GGCC	4 cut(s)	108, 135, 338, 352
HapII	CCGG	3 cut(s)	105, 191, 198
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	3 cut(s)	64, 443, 530
Hin1II	CATG	1 cut(s)	345
Hin6I	GCGC	3 cut(s)	62, 441, 528
HinP1I	GCGC	3 cut(s)	62, 441, 528
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	4 cut(s)	17, 305, 311, 466
HpaII	CCGG	3 cut(s)	105, 191, 198
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	158, 173, 310
Hpy188III	TCNNGA	3 cut(s)	114, 245, 478
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	2 cut(s)	29, 233
HpyAV	CCTTC	2 cut(s)	60, 431
HpyCH4III	ACNGT	3 cut(s)	10, 188, 484
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	281, 446, 452, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 449
HpyF3I	CTNAG	2 cut(s)	179, 243
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	345
HspAI	GCGC	3 cut(s)	62, 441, 528
Kzo9I	GATC	2 cut(s)	173, 363
LmnI	GCTCC	2 cut(s)	41, 203
Lsp1109I	GCAGC	3 cut(s)	46, 181, 430
LweI	GCATC	3 cut(s)	268, 483, 505
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	4 cut(s)	122, 182, 271, 291
MalI	GATC	2 cut(s)	175, 365
MbiI	CCGCTC	2 cut(s)	111, 152
MboI	GATC	2 cut(s)	173, 363
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	3 cut(s)	208, 228, 340
MluCI	AATT	2 cut(s)	375, 447
MlyI	GAGTC	2 cut(s)	11, 305
MmeI	TCCRAC	1 cut(s)	333
MseI	TTAA	2 cut(s)	411, 548
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	3 cut(s)	105, 191, 198
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	203, 449
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	173, 363
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	3 cut(s)	148, 338, 339
NmeAIII	GCCGAG	2 cut(s)	35, 242
NmuCI	GTSAC	2 cut(s)	122, 291
NspV	TTCGAA	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 214, 234
PfeI	GAWTC	2 cut(s)	305, 466
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	6 cut(s)	61, 79, 82, 110, 196, 445
PleI	GAGTC	2 cut(s)	11, 305
PpsI	GAGTC	2 cut(s)	11, 305
Psp124BI	GAGCTC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	148, 338, 339
PspOMI	GGGCCC	1 cut(s)	336
PspPI	GGNCC	5 cut(s)	147, 188, 336, 337, 350
Rsr2I	CGGWCCG	1 cut(s)	188
RsrII	CGGWCCG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	411, 548
SatI	GCNGC	6 cut(s)	60, 78, 81, 109, 195, 444
Sau3AI	GATC	2 cut(s)	173, 363
Sau96I	GGNCC	5 cut(s)	147, 188, 336, 337, 350
SchI	GAGTC	2 cut(s)	11, 305
SduI	GDGCHC	3 cut(s)	208, 228, 340
SetI	ASST	5 cut(s)	144, 208, 223, 287, 411
SfaNI	GCATC	3 cut(s)	268, 483, 505
SfcI	CTRYAG	2 cut(s)	6, 127
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	2 cut(s)	147, 188
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	375, 447
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	6 cut(s)	42, 78, 81, 109, 150, 252
SstI	GAGCTC	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	3 cut(s)	10, 188, 484
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	3 cut(s)	15, 258, 469
TasI	AATT	2 cut(s)	375, 447
TauI	GCSGC	3 cut(s)	80, 83, 111
TfiI	GAWTC	2 cut(s)	305, 466
Tru1I	TTAA	2 cut(s)	411, 548
Tru9I	TTAA	2 cut(s)	411, 548
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	122, 291
TseI	GCWGC	3 cut(s)	59, 194, 443
Tsp45I	GTSAC	2 cut(s)	122, 291
TspDTI	ATGAA	2 cut(s)	396, 450
TspRI	CASTG	1 cut(s)	436
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	147, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.