Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Reverse (-)

28302247 .. 28305435

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCCACCGTCCGTCAATCCATCGTCATTCCTCGCTCCTCCGCTCTGCCTTCACCTACTCTCTCTCCGATCGCCGCCTCCTCGGTTTCTTCCCTCACCGGCCGCCGTGGATTGCCTCACTACTCCGGCCTCAAGGTCAGGTCCGCTCTTCAGACTACTCGCTCTGTCGGATCTCTCAGCTACGGTCCCGCTTCCGGACTCTCTCGCCGCCGGCGTGGTCTCGTTGTCTGCGAGGCTCAGGACACTGCCGTCGAAGTGCCTGCTGTTTCTGATGCAACATGGCAGTCACTTGTCCTTGATGCTGAATTACCTGTTTTGGTTGAATTCTGGGCCCCATGGTGTGGTCCATGTCGTATGATCCACCCTATAATTGATGAACTGGCAAAGCAATATGCTGGGAAGCTCAAATGTTACAAAGTAAACACTGATGAGAGTGCTTCAGTTGCAACCCGATATGGGATCCGAAGCATCCCCACTGTCATCTTATTCAAGGATGAAGTGTATCAAGGTGATTTCCTTTGCCATATGGTTTCTGGCTATTCAAACGAGGACAAGTTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

188

Amino Acids

20.35

Weight (kDa)

8.85

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	87 - 171	5.3e-26	Thioredoxin
Thioredoxin_2	PF13098	102 - 185	8.3e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccBSI	CCGCTC	2 cut(s)	44, 146
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 208
AclWI	GGATC	4 cut(s)	178, 352, 454, 467
AcoI	YGGCCR	2 cut(s)	3, 100
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	134, 423
AfiI	CCNNNNNNNGG	3 cut(s)	194, 341, 456
AgsI	TTSAA	3 cut(s)	323, 490, 543
AluBI	AGCT	2 cut(s)	180, 403
AluI	AGCT	2 cut(s)	180, 403
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	4 cut(s)	178, 352, 454, 467
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	4 cut(s)	3, 100, 127, 330
ApaI	GGGCCC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	5 cut(s)	141, 185, 330, 331, 344
AsuHPI	GGTGA	3 cut(s)	45, 88, 521
AvaII	GGWCC	3 cut(s)	141, 185, 344
BaeGI	GKGCMC	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	334
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	90, 233
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	562
BisI	GCNGC	3 cut(s)	75, 103, 208
BlsI	GCNGC	3 cut(s)	76, 104, 209
Bme18I	GGWCC	3 cut(s)	141, 185, 344
BmgT120I	GGNCC	5 cut(s)	141, 185, 330, 331, 344
BmiI	GGNNCC	4 cut(s)	187, 332, 333, 461
BmsI	GCATC	3 cut(s)	262, 289, 477
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	81, 106, 335
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 341, 456
Bse118I	RCCGGY	2 cut(s)	98, 210
Bse1I	ACTGG	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	81, 106, 335
BseGI	GGATG	2 cut(s)	468, 499
BseLI	CCNNNNNNNGG	3 cut(s)	194, 341, 456
BseMII	CTCAG	2 cut(s)	190, 251
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	2 cut(s)	28, 70
BseSI	GKGCMC	1 cut(s)	334
BseX3I	CGGCCG	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	395
Bsh1285I	CGRYCG	2 cut(s)	72, 103
BshFI	GGCC	4 cut(s)	5, 102, 129, 332
BsiEI	CGRYCG	2 cut(s)	72, 103
BsiSI	CCGG	4 cut(s)	99, 126, 195, 211
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	194, 341, 456
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	5, 102, 129, 332
Bso31I	GGTCTC	1 cut(s)	224
Bsp120I	GGGCCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	4 cut(s)	69, 170, 357, 459
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 208
BspANI	GGCC	4 cut(s)	5, 102, 129, 332
BspCNI	CTCAG	2 cut(s)	189, 250
BspEI	TCCGGA	1 cut(s)	194
BspLI	GGNNCC	4 cut(s)	187, 332, 333, 461
BspPI	GGATC	4 cut(s)	178, 352, 454, 467
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	224
BsrBI	CCGCTC	2 cut(s)	44, 146
BsrFI	RCCGGY	2 cut(s)	98, 210
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	2 cut(s)	98, 210
BssECI	CCNNGG	3 cut(s)	81, 106, 335
BssMI	GATC	4 cut(s)	69, 170, 357, 459
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	10, 185, 478
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	212, 261
BstDEI	CTNAG	2 cut(s)	176, 237
BstDSI	CCRYGG	2 cut(s)	106, 335
BstF5I	GGATG	2 cut(s)	468, 499
BstKTI	GATC	4 cut(s)	72, 173, 360, 462
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	69, 170, 357, 459
BstMCI	CGRYCG	2 cut(s)	72, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	170, 459
BstYI	RGATCY	2 cut(s)	170, 459
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	4 cut(s)	5, 102, 129, 332
BtgI	CCRYGG	2 cut(s)	106, 335
BtsCI	GGATG	2 cut(s)	468, 499
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	243, 423, 474
Cac8I	GCNNGC	2 cut(s)	212, 261
Cfr10I	RCCGGY	2 cut(s)	98, 210
Cfr13I	GGNCC	5 cut(s)	141, 185, 330, 331, 344
CviAII	CATG	3 cut(s)	279, 336, 348
CviJI	RGCY	8 cut(s)	5, 102, 129, 180, 236, 332, 403, 537
CviKI_1	RGCY	8 cut(s)	5, 102, 129, 180, 236, 332, 403, 537
DdeI	CTNAG	2 cut(s)	176, 237
DpnI	GATC	4 cut(s)	71, 172, 359, 461
DpnII	GATC	4 cut(s)	69, 170, 357, 459
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	3, 100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	3 cut(s)	141, 185, 344
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	134, 423
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	3 cut(s)	282, 339, 351
FaiI	YATR	9 cut(s)	280, 337, 349, 356, 368, 393, 456, 525, 527
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	3 cut(s)	278, 335, 347
FauI	CCCGC	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	75, 103, 208
FokI	GGATG	2 cut(s)	455, 506
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	75, 103, 208
FspBI	CTAG	1 cut(s)	562
GluI	GCNGC	3 cut(s)	75, 103, 208
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	4 cut(s)	5, 102, 129, 332
HapII	CCGG	4 cut(s)	99, 126, 195, 211
Hin1II	CATG	3 cut(s)	282, 339, 351
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	4 cut(s)	99, 126, 195, 211
HphI	GGTGA	3 cut(s)	45, 88, 521
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	5 cut(s)	69, 153, 170, 271, 464
Hpy188III	TCNNGA	2 cut(s)	195, 239
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	3 cut(s)	10, 185, 478
HpyCH4V	TGCA	2 cut(s)	275, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	2 cut(s)	176, 237
Hsp92II	CATG	3 cut(s)	282, 339, 351
Kpn2I	TCCGGA	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	4 cut(s)	69, 170, 357, 459
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	41
LweI	GCATC	3 cut(s)	262, 289, 477
MaeI	CTAG	1 cut(s)	562
MaeIII	GTNAC	2 cut(s)	285, 410
MalI	GATC	4 cut(s)	71, 172, 359, 461
MbiI	CCGCTC	2 cut(s)	44, 146
MboI	GATC	4 cut(s)	69, 170, 357, 459
MboII	GAAGA	2 cut(s)	81, 140
MflI	RGATCY	2 cut(s)	170, 459
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	305, 323, 369
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	9 cut(s)	42, 49, 88, 91, 104, 126, 140, 226, 541
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	210
MroI	TCCGGA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	99, 126, 195, 211
MwoI	GCNNNNNNNGC	1 cut(s)	443
NaeI	GCCGGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	335
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	4 cut(s)	69, 170, 357, 459
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	3 cut(s)	282, 339, 351
NlaIV	GGNNCC	4 cut(s)	187, 332, 333, 461
NmuCI	GTSAC	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	2 cut(s)	211, 228
PdiI	GCCGGC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	76, 104, 209
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	395
PspN4I	GGNNCC	4 cut(s)	187, 332, 333, 461
PspOMI	GGGCCC	1 cut(s)	330
PspPI	GGNCC	5 cut(s)	141, 185, 330, 331, 344
PsuI	RGATCY	2 cut(s)	170, 459
PvuI	CGATCG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	3 cut(s)	75, 103, 208
Sau3AI	GATC	4 cut(s)	69, 170, 357, 459
Sau96I	GGNCC	5 cut(s)	141, 185, 330, 331, 344
SchI	GAGTC	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	7 cut(s)	58, 138, 143, 182, 313, 405, 511
SfaNI	GCATC	3 cut(s)	262, 289, 477
SgrAI	CRCCGGYG	1 cut(s)	210
SinI	GGWCC	3 cut(s)	141, 185, 344
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	305, 323, 369
SsiI	CCGC	6 cut(s)	42, 75, 103, 144, 189, 208
SspMI	CTAG	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	3 cut(s)	10, 185, 478
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	305, 323, 369
TauI	GCSGC	3 cut(s)	77, 105, 210
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	3 cut(s)	250, 430, 481
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	390, 510
TspRI	CASTG	3 cut(s)	250, 430, 481
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	141, 185, 344
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XspI	CTAG	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.