Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

65427866 .. 65430248

Gene Structure 2383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCCACCGTCCTTGAATCCATCGTCATTCCTCGCTCCTCCGCTCTGCCTTCACCTACTCTCTCCCCGATCGCCGCCTCCTCGGTTTCTTCCCTCACCGCCCGCCGTGGATTGCCTCACTACTCCGGCCTCAAGGTCAGGTCCGCTCTTCAGACTACTCGCTCTGTCGGATCTCTGAGCTACGGTCCCGCTCGTGGCCGGCGGGGTCTCGTTGTCTGCGAGGCTCAGGACACTGCCGTCGAAGTGCCTGCTGTTTCTGATGCAACATGGCAGTCACTTGTCCTCGATGCTGAATTACCTGTTTTGGTTGAATTCTGGGCCCCATGGTGTGGTCCATGTCGTATGATCCACCCTATAATTGATGAACTGTCAAAGCAATATGCTGGGAAGCTCAAATGTTACAAAGTAAACACCGATGAAAGTGCTTCAGTTGCAACCCGATATGGGATCCGAAGCATCCCCACTGTCATCTTATTCAAGGATGGTGAGAAAAAAGATGCAATTATTGGGGCTGTTCCCAAATCCACATTAACCACCAGCATAGAAAAGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

185

Amino Acids

19.86

Weight (kDa)

9.12

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	83 - 182	6.2e-30	Thioredoxin
Thioredoxin_2	PF13098	98 - 178	4.4e-09	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	3 cut(s)	44, 146, 191
AciI	CCGC	7 cut(s)	42, 75, 99, 103, 144, 189, 202
AclWI	GGATC	4 cut(s)	178, 340, 442, 455
AcoI	YGGCCR	2 cut(s)	3, 196
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	134, 411
AfiI	CCNNNNNNNGG	3 cut(s)	194, 329, 444
AgsI	TTSAA	3 cut(s)	17, 311, 478
AluBI	AGCT	2 cut(s)	180, 391
AluI	AGCT	2 cut(s)	180, 391
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	4 cut(s)	178, 340, 442, 455
AoxI	GGCC	4 cut(s)	3, 127, 196, 318
ApaI	GGGCCC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	311
AspS9I	GGNCC	5 cut(s)	141, 185, 318, 319, 332
AsuHPI	GGTGA	3 cut(s)	45, 88, 497
AvaII	GGWCC	3 cut(s)	141, 185, 332
BaeGI	GKGCMC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	192
BccI	CCATC	2 cut(s)	29, 476
BceAI	ACGGC	2 cut(s)	90, 221
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 404, 438
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	3 cut(s)	141, 185, 332
BmgT120I	GGNCC	5 cut(s)	141, 185, 318, 319, 332
BmiI	GGNNCC	4 cut(s)	187, 320, 321, 449
BmsI	GCATC	4 cut(s)	250, 277, 465, 487
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	81, 106, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 329, 444
Bse118I	RCCGGY	1 cut(s)	198
BseDI	CCNNGG	3 cut(s)	81, 106, 323
BseGI	GGATG	2 cut(s)	456, 487
BseLI	CCNNNNNNNGG	3 cut(s)	194, 329, 444
BseMII	CTCAG	2 cut(s)	167, 239
BseRI	GAGGAG	2 cut(s)	28, 70
BseSI	GKGCMC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	5, 129, 198, 320
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	126, 199
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	194, 329, 444
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	5, 129, 198, 320
Bso31I	GGTCTC	1 cut(s)	212
Bsp120I	GGGCCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	69, 170, 345, 447
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	7 cut(s)	42, 75, 99, 103, 144, 189, 202
BspANI	GGCC	4 cut(s)	5, 129, 198, 320
BspCNI	CTCAG	2 cut(s)	168, 238
BspLI	GGNNCC	4 cut(s)	187, 320, 321, 449
BspPI	GGATC	4 cut(s)	178, 340, 442, 455
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	3 cut(s)	44, 146, 191
BsrFI	RCCGGY	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	3 cut(s)	81, 106, 323
BssMI	GATC	4 cut(s)	69, 170, 345, 447
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	10, 185, 369, 466
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	103, 200, 249
BstDEI	CTNAG	2 cut(s)	176, 225
BstDSI	CCRYGG	2 cut(s)	106, 323
BstF5I	GGATG	2 cut(s)	456, 487
BstKTI	GATC	4 cut(s)	72, 173, 348, 450
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	69, 170, 345, 447
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSLI	GKGCMC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	170, 447
BstYI	RGATCY	2 cut(s)	170, 447
BsuRI	GGCC	4 cut(s)	5, 129, 198, 320
BtgI	CCRYGG	2 cut(s)	106, 323
BtsCI	GGATG	2 cut(s)	456, 487
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 462
Cac8I	GCNNGC	3 cut(s)	103, 200, 249
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	5 cut(s)	141, 185, 318, 319, 332
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	3 cut(s)	267, 324, 336
CviJI	RGCY	8 cut(s)	5, 129, 180, 198, 224, 320, 391, 512
CviKI_1	RGCY	8 cut(s)	5, 129, 180, 198, 224, 320, 391, 512
DdeI	CTNAG	2 cut(s)	176, 225
DpnI	GATC	4 cut(s)	71, 172, 347, 449
DpnII	GATC	4 cut(s)	69, 170, 345, 447
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	2 cut(s)	3, 196
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	3 cut(s)	141, 185, 332
Eco57I	CTGAAG	2 cut(s)	134, 411
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	3 cut(s)	270, 327, 339
FaiI	YATR	8 cut(s)	268, 325, 337, 344, 356, 381, 444, 542
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	3 cut(s)	266, 323, 335
FauI	CCCGC	3 cut(s)	110, 195, 196
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	443, 494
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	5, 129, 198, 320
HapII	CCGG	2 cut(s)	126, 199
Hin1II	CATG	3 cut(s)	270, 327, 339
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	2 cut(s)	126, 199
HphI	GGTGA	3 cut(s)	45, 88, 497
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	5 cut(s)	153, 170, 177, 259, 452
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	4 cut(s)	10, 185, 369, 466
HpyCH4V	TGCA	3 cut(s)	263, 434, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	176, 225
Hsp92II	CATG	3 cut(s)	270, 327, 339
KroI	GCCGGC	1 cut(s)	198
KroNI	GCCGGC	1 cut(s)	200
Kzo9I	GATC	4 cut(s)	69, 170, 345, 447
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	9 cut(s)	124, 139, 212, 212, 261, 301, 312, 369, 550
LweI	GCATC	4 cut(s)	250, 277, 465, 487
MaeIII	GTNAC	2 cut(s)	273, 398
MalI	GATC	4 cut(s)	71, 172, 347, 449
MbiI	CCGCTC	3 cut(s)	44, 146, 191
MboI	GATC	4 cut(s)	69, 170, 345, 447
MboII	GAAGA	2 cut(s)	81, 140
MflI	RGATCY	2 cut(s)	170, 447
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	293, 311, 357, 501
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	9 cut(s)	42, 49, 88, 91, 104, 126, 140, 214, 293
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	126, 199
MwoI	GCNNNNNNNGC	1 cut(s)	431
NaeI	GCCGGC	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	4 cut(s)	69, 170, 345, 447
NgoMIV	GCCGGC	1 cut(s)	198
NlaIII	CATG	3 cut(s)	270, 327, 339
NlaIV	GGNNCC	4 cut(s)	187, 320, 321, 449
NmuCI	GTSAC	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	76
Ple19I	CGATCG	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	4 cut(s)	187, 320, 321, 449
PspOMI	GGGCCC	1 cut(s)	318
PspPI	GGNCC	5 cut(s)	141, 185, 318, 319, 332
PsuI	RGATCY	2 cut(s)	170, 447
PvuI	CGATCG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	4 cut(s)	69, 170, 345, 447
Sau96I	GGNCC	5 cut(s)	141, 185, 318, 319, 332
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	6 cut(s)	58, 138, 143, 182, 301, 393
SfaNI	GCATC	4 cut(s)	250, 277, 465, 487
SinI	GGWCC	3 cut(s)	141, 185, 332
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	4 cut(s)	293, 311, 357, 501
SsiI	CCGC	7 cut(s)	42, 75, 99, 103, 144, 189, 202
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	4 cut(s)	10, 185, 369, 466
TaqI	TCGA	2 cut(s)	240, 285
TasI	AATT	4 cut(s)	293, 311, 357, 501
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	2 cut(s)	238, 469
TseFI	GTSAC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	378, 432
TspRI	CASTG	2 cut(s)	238, 469
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	3 cut(s)	141, 185, 332
XapI	RAATTY	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.