Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

24770002 .. 24772236

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGATCCCATACCGAACCACCCCTAACTATGTGGGTAAAAATCATAGCTAATTTTAAAAAGGTAATGCTCACCTGTTGGAGCGATTATGTATTTAAATTATATTTTATAAACCATATAACGTATGGTGACACAATTTACAATTTTAATTTAGAAAATTATATGATTGGTGACCTTACACAAGGCAGGGAGAATCTAATCAGAATATCGCCGCTCTCGCCCCCAGTAAATCGTCTCATCCATCGCCTTGGCTATCCACACTCCTCTCCCCAATCTACTAGCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTTTCTATCTCTAGAGCTCCGATCCTCTGCGGCTATGGCTACAGTCCTCGACTCCATCGTTGTTCCCCGATCCTCTGCTCTCCCTTCTTCAGCCGCGCTCTCTCGGATCCCGGCTCCCTCGTCGCTCTCGTTCTTGTCCGCCGGCCCTCGGTTGCCTCGCTACAGAGGCCTCAAGGTCGGATCAGCTCTCCGAACTCGCTCCGTCGGATCGCTGAGTTACGGTCCCGCTTCCGGACGAGCGAGCCGCCGTGGCGGGCTCGTCGTCTGCGAGGCTCAGGACACTGCCGTCGAAGTGGCTGCTGTTAGTGATGCAACATGGCAGTCACTTGTCCTAGATTCTGAATTCCCTGTTTTGGTTGAATTCTGGGCCCCGTGGTGCGGGCCTTGCCGTATGATCCACCCTATAATTGATGAACTGGCAAAGCAATATGCTGGGAAGCTCAAATGCTACAAAGTTAACACTGATGAGAGTGCTTCAATTGCAACCCGATATGGGATTCGAAGCATCCCAACTGTCATCATATTCAAAGGTGGGGAGAAGAAAGATGCCGTTATTGGTGCTGTTCCAAAATCTACATTAACCACCAGCATAGAGAAGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

307

Amino Acids

33.54

Weight (kDa)

9.4

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AasI	GACNNNNNNGTC	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	545
AciI	CCGC	8 cut(s)	212, 344, 408, 453, 540, 559, 567, 693
AclWI	GGATC	8 cut(s)	13, 330, 378, 415, 428, 502, 529, 703
AcsI	RAATTY	2 cut(s)	656, 674
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	5 cut(s)	462, 545, 667, 692, 807
AgsI	TTSAA	3 cut(s)	674, 792, 841
AluBI	AGCT	5 cut(s)	50, 282, 331, 500, 754
AluI	AGCT	5 cut(s)	50, 282, 331, 500, 754
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	8 cut(s)	13, 330, 378, 415, 428, 502, 529, 703
Aor13HI	TCCGGA	1 cut(s)	545
AoxI	GGCC	4 cut(s)	457, 481, 681, 695
ApaI	GGGCCC	1 cut(s)	685
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	2 cut(s)	656, 674
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	5 cut(s)	458, 536, 681, 682, 695
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	3 cut(s)	64, 140, 182
AsuII	TTCGAA	1 cut(s)	814
AvaII	GGWCC	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	685
BamHI	GGATCC	2 cut(s)	5, 420
BanII	GRGCYC	3 cut(s)	333, 573, 685
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	2 cut(s)	249, 377
BceAI	ACGGC	4 cut(s)	546, 584, 687, 848
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	3 cut(s)	279, 326, 647
BfmI	CTRYAG	2 cut(s)	354, 475
BglI	GCCNNNNNGGC	1 cut(s)	564
BisI	GCNGC	5 cut(s)	212, 345, 408, 559, 612
BlsI	GCNGC	5 cut(s)	213, 346, 409, 560, 613
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	5 cut(s)	458, 536, 681, 682, 695
BmiI	GGNNCC	6 cut(s)	7, 422, 429, 538, 683, 684
BmrFI	CCNGG	1 cut(s)	425
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	3 cut(s)	613, 828, 850
BmuI	ACTGGG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	814
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	247, 461, 562, 686
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	5 cut(s)	462, 545, 667, 692, 807
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	224, 735
BseAI	TCCGGA	1 cut(s)	545
BseDI	CCNNGG	4 cut(s)	247, 461, 562, 686
BseGI	GGATG	2 cut(s)	237, 819
BseLI	CCNNNNNNNGG	5 cut(s)	462, 545, 667, 692, 807
BseMII	CTCAG	2 cut(s)	518, 602
BseNI	ACTGG	2 cut(s)	224, 735
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	1 cut(s)	598
BseYI	CCCAGC	1 cut(s)	746
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	4 cut(s)	459, 483, 683, 697
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	425, 456, 546
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	5 cut(s)	462, 545, 667, 692, 807
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	4 cut(s)	459, 483, 683, 697
Bsp119I	TTCGAA	1 cut(s)	814
Bsp120I	GGGCCC	1 cut(s)	681
Bsp1286I	GDGCHC	3 cut(s)	333, 573, 685
Bsp13I	TCCGGA	1 cut(s)	545
Bsp143I	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
BspACI	CCGC	8 cut(s)	212, 344, 408, 453, 540, 559, 567, 693
BspANI	GGCC	4 cut(s)	459, 483, 683, 697
BspCNI	CTCAG	2 cut(s)	519, 601
BspEI	TCCGGA	1 cut(s)	545
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	6 cut(s)	7, 422, 429, 538, 683, 684
BspPI	GGATC	8 cut(s)	13, 330, 378, 415, 428, 502, 529, 703
BspT104I	TTCGAA	1 cut(s)	814
BsrBI	CCGCTC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	224, 735
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	4 cut(s)	247, 461, 562, 686
BssMI	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	3 cut(s)	358, 536, 829
BstBI	TTCGAA	1 cut(s)	814
BstC8I	GCNNGC	4 cut(s)	457, 556, 569, 695
BstDEI	CTNAG	2 cut(s)	527, 588
BstDSI	CCRYGG	2 cut(s)	562, 686
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	237, 819
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	7 cut(s)	8, 338, 386, 423, 497, 524, 711
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
BstMWI	GCNNNNNNNGC	6 cut(s)	217, 350, 480, 564, 699, 794
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	2 cut(s)	354, 475
BstSLI	GKGCMC	1 cut(s)	685
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	598
BstX2I	RGATCY	2 cut(s)	5, 420
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	5, 420
BsuRI	GGCC	4 cut(s)	459, 483, 683, 697
BtgI	CCRYGG	2 cut(s)	562, 686
BtgZI	GCGATG	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	237, 819
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	594, 774
Cac8I	GCNNGC	4 cut(s)	457, 556, 569, 695
CfoI	GCGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	5 cut(s)	458, 536, 681, 682, 695
CviAII	CATG	1 cut(s)	630
DdeI	CTNAG	2 cut(s)	527, 588
DpnI	GATC	7 cut(s)	7, 337, 385, 422, 496, 523, 710
DpnII	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
DraI	TTTAAA	2 cut(s)	58, 97
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
EciI	GGCGGA	1 cut(s)	442
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	483
Eco24I	GRGCYC	3 cut(s)	333, 573, 685
Eco47I	GGWCC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	682
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	2 cut(s)	656, 674
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	3 cut(s)	333, 573, 685
ErhI	CCWWGG	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	1 cut(s)	633
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	1 cut(s)	629
FauI	CCCGC	3 cut(s)	547, 560, 686
Fnu4HI	GCNGC	5 cut(s)	212, 345, 408, 559, 612
FokI	GGATG	2 cut(s)	224, 806
FriOI	GRGCYC	3 cut(s)	333, 573, 685
Fsp4HI	GCNGC	5 cut(s)	212, 345, 408, 559, 612
FspBI	CTAG	3 cut(s)	279, 326, 647
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	5 cut(s)	212, 345, 408, 559, 612
GsaI	CCCAGC	1 cut(s)	750
HaeIII	GGCC	4 cut(s)	459, 483, 683, 697
HapII	CCGG	3 cut(s)	425, 456, 546
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	633
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	4 cut(s)	193, 365, 650, 811
HpaI	GTTAAC	1 cut(s)	772
HpaII	CCGG	3 cut(s)	425, 456, 546
HphI	GGTGA	3 cut(s)	64, 140, 182
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	7 cut(s)	203, 335, 420, 494, 506, 521, 655
Hpy188III	TCNNGA	3 cut(s)	326, 546, 590
Hpy8I	GTNNAC	1 cut(s)	772
Hpy99I	CGWCG	4 cut(s)	439, 521, 578, 605
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	3 cut(s)	358, 536, 829
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	626, 797
HpyF10VI	GCNNNNNNNGC	6 cut(s)	217, 350, 480, 564, 699, 794
HpyF3I	CTNAG	2 cut(s)	527, 588
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	633
HspAI	GCGC	1 cut(s)	410
Kpn2I	TCCGGA	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
LmnI	GCTCC	4 cut(s)	81, 336, 433, 518
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	3 cut(s)	613, 828, 850
MaeI	CTAG	3 cut(s)	279, 326, 647
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	4 cut(s)	128, 170, 530, 636
MalI	GATC	7 cut(s)	7, 337, 385, 422, 496, 523, 710
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
MboII	GAAGA	2 cut(s)	393, 865
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	2 cut(s)	5, 420
MhlI	GDGCHC	3 cut(s)	333, 573, 685
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	3 cut(s)	59, 472, 499
MroI	TCCGGA	1 cut(s)	545
MroNI	GCCGGC	1 cut(s)	455
MseI	TTAA	5 cut(s)	57, 96, 147, 771, 893
MspI	CCGG	3 cut(s)	425, 456, 546
MspR9I	CCNGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	792
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	6 cut(s)	217, 350, 480, 564, 699, 794
NaeI	GCCGGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	1 cut(s)	633
NlaIV	GGNNCC	6 cut(s)	7, 422, 429, 538, 683, 684
NmuCI	GTSAC	3 cut(s)	128, 170, 636
NspV	TTCGAA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	3 cut(s)	369, 440, 579
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	193, 650, 811
PkrI	GCNGC	5 cut(s)	213, 346, 409, 560, 613
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	333
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	746
PspN4I	GGNNCC	6 cut(s)	7, 422, 429, 538, 683, 684
PspOMI	GGGCCC	1 cut(s)	681
PspPI	GGNCC	5 cut(s)	458, 536, 681, 682, 695
PsuI	RGATCY	2 cut(s)	5, 420
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	57, 96, 147, 771, 893
SatI	GCNGC	5 cut(s)	212, 345, 408, 559, 612
Sau3AI	GATC	7 cut(s)	5, 335, 383, 420, 494, 521, 708
Sau96I	GGNCC	5 cut(s)	458, 536, 681, 682, 695
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	3 cut(s)	333, 573, 685
SfaNI	GCATC	3 cut(s)	613, 828, 850
SfcI	CTRYAG	2 cut(s)	354, 475
SfuI	TTCGAA	1 cut(s)	814
SinI	GGWCC	1 cut(s)	536
SmiI	ATTTAAAT	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	8 cut(s)	212, 344, 408, 453, 540, 559, 567, 693
SspMI	CTAG	3 cut(s)	279, 326, 647
SstI	GAGCTC	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	247
SwaI	ATTTAAAT	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	358, 536, 829
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	363, 603, 814
TauI	GCSGC	4 cut(s)	214, 347, 410, 561
TfiI	GAWTC	3 cut(s)	193, 650, 811
Tru1I	TTAA	5 cut(s)	57, 96, 147, 771, 893
Tru9I	TTAA	5 cut(s)	57, 96, 147, 771, 893
TscAI	CASTG	2 cut(s)	601, 781
TseFI	GTSAC	3 cut(s)	128, 170, 636
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	3 cut(s)	128, 170, 636
TspDTI	ATGAA	1 cut(s)	741
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	2 cut(s)	601, 781
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	656, 674
XbaI	TCTAGA	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	3 cut(s)	279, 326, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.