Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

2965052 .. 2966010

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG019400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTTGGTGGGTCGACCGGCTTCCTTGTTGTACGGAGAGGAAAAATATTTTGCTCTTAAAAATTACAGTGCCTGCTGTTTCTGATGCAACATGGCAGTCACTCATCCTTGATGCTAAATTACCTGTTTTGGTTGAATTCTGGGCCCCATGGTGTGGTCCATGTCGTATGATCCACCCTATAATTGATGAACTGGCAAAGCAATATGCTGGGAAGCTCAAATGTTACAAAGTAAACACCGATGAGAGTGCTTCAGTTGCAACCCGATATGGGATCCGAAGCATCCCCACTGTCATCTTATTCAAGGATGGTGAGAAAAAAGAAGCAGTTATTGGGGCTGTTCCCAAATCCACATTAACCACCAGCATAGAAAAGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

127

Amino Acids

14.25

Weight (kDa)

8.84

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	26 - 124	7.1e-31	Thioredoxin
Thioredoxin_2	PF13098	40 - 120	2.3e-09	Thioredoxin-like domain
Thioredoxin_9	PF14595	47 - 117	1.2e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	15
AclWI	GGATC	3 cut(s)	166, 268, 281
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	155, 270
AgsI	TTSAA	2 cut(s)	137, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwI	GGATC	3 cut(s)	166, 268, 281
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	144
ApaI	GGGCCC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	144, 145, 158
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	148
BccI	CCATC	1 cut(s)	302
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	3 cut(s)	144, 145, 158
BmiI	GGNNCC	3 cut(s)	146, 147, 275
BmsI	GCATC	3 cut(s)	76, 103, 291
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 270
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	105, 282, 313
BseLI	CCNNNNNNNGG	2 cut(s)	155, 270
BseNI	ACTGG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	209
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	155, 270
BsnI	GGCC	1 cut(s)	146
Bsp120I	GGGCCC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	171, 273
Bsp19I	CCATGG	1 cut(s)	149
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	146, 147, 275
BspPI	GGATC	3 cut(s)	166, 268, 281
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	171, 273
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	70, 292
BstC8I	GCNNGC	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	105, 282, 313
BstKTI	GATC	2 cut(s)	174, 276
BstMBI	GATC	2 cut(s)	171, 273
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	105, 282, 313
BtsIMutI	CAGTG	2 cut(s)	75, 288
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	144, 145, 158
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	3 cut(s)	93, 150, 162
CviJI	RGCY	4 cut(s)	22, 146, 217, 338
CviKI_1	RGCY	4 cut(s)	22, 146, 217, 338
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	2 cut(s)	173, 275
DpnII	GATC	2 cut(s)	171, 273
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	96, 153, 165
FaiI	YATR	8 cut(s)	94, 151, 163, 170, 182, 207, 270, 368
FatI	CATG	3 cut(s)	92, 149, 161
FblI	GTMKAC	1 cut(s)	15
FokI	GGATG	3 cut(s)	92, 269, 320
FriOI	GRGCYC	1 cut(s)	148
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	3 cut(s)	96, 153, 165
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	16, 235
Hpy188I	TCNGA	2 cut(s)	85, 278
Hpy8I	GTNNAC	2 cut(s)	16, 235
HpyCH4III	ACNGT	2 cut(s)	70, 292
HpyCH4V	TGCA	2 cut(s)	89, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	96, 153, 165
Kzo9I	GATC	2 cut(s)	171, 273
LpnPI	CCDG	7 cut(s)	32, 87, 127, 138, 179, 195, 376
LweI	GCATC	3 cut(s)	76, 103, 291
MaeIII	GTNAC	2 cut(s)	99, 224
MalI	GATC	2 cut(s)	173, 275
MboI	GATC	2 cut(s)	171, 273
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	4 cut(s)	63, 119, 137, 183
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	2 cut(s)	59, 356
MspI	CCGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	171, 273
NlaIII	CATG	3 cut(s)	96, 153, 165
NlaIV	GGNNCC	3 cut(s)	146, 147, 275
NmuCI	GTSAC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	146, 147, 275
PspOMI	GGGCCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	144, 145, 158
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	59, 356
Sau3AI	GATC	2 cut(s)	171, 273
Sau96I	GGNCC	3 cut(s)	144, 145, 158
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	2 cut(s)	127, 219
SfaNI	GCATC	3 cut(s)	76, 103, 291
SinI	GGWCC	1 cut(s)	158
Sse9I	AATT	4 cut(s)	63, 119, 137, 183
SspI	AATATT	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	70, 292
TaqI	TCGA	1 cut(s)	15
TasI	AATT	4 cut(s)	63, 119, 137, 183
Tru1I	TTAA	2 cut(s)	59, 356
Tru9I	TTAA	2 cut(s)	59, 356
TscAI	CASTG	2 cut(s)	75, 295
TseFI	GTSAC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	75, 295
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.