Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

13268826 .. 13274951

Gene Structure 6126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0143500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAATTCGCTTCCTGCTCTATTCTCAGGCCTCAGTCCTTCTCAACCTTCTTTCACGATACCAGCTCTCACCTCTATGCTTTACCCAAGAACCATCTCAACTTGCCCTCTCCATTTTCCCCGGCTTTCCCAAAAAACTCAACCTTTCCAGGAAAATGTCTCCACTTTCATCGCTTCACTGCTTTCAGCTCACTTTCCGGCGCGGACGGGCAGAACCCATCTCAGGAACTCGCTGTTCTTCTTGAAGTTGACGGGGTTCTTATGGATGCGTATCGTTTGGGTAACCGCCCATCCTTCAATGTAGCATTTAAAAAGCTCGGGCTTGACTGTGCAAACTGGACCGAACCTGTTTATTTGGATCTCCTAAGGAAGTGTGCTGGTGATGAGGAAAAGATGCTGATCATGTATTTTAATCGGATTGGTTGGCCTTCGTCATTGCCCACCACTGAGAAGGAATCATTCGTAAAAAATGTTCTGCAAAAAAAGAAAATTGCAATGGATGAGTTTCTGATGTCCAATAGTTTACCTTTGCGACCTGGACTTGAAGAATTTATTGATGATGCATACAATGAAGGAATACCTGTGGTCATATTGACATCCTATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATTGAAAAGCTTGGCCGTGAAAGAATTTTGAAGCTAAAGATTGTTGGGGATAAGGAGGTGGAACAGAGTTTATATGGTCAAGTAGTATTTGGTAAAGTCTTTTCTTCAGGTGTGGATGAGAAACTAGCTAAGGAGGCAGTGAAAACAGTTTCTGCTGAGAAACAAAGGATTGCAGAGGAGGTTGCATCGATGCTAAAGTTGAATGTAGAACTTGATACTACCTCATCTGAAAGCTTACAGAAGATCATAGCTGCCTTGAGGGCAGGGGCAGAAAATGCTGGACTACCTGTCTCCAATTGTGTTCTCATTGCAGGAAGTCAGTCAGGTGTAGTAGGAGCTCAGCGAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACAGCTAGAGCCGAGTTCCCTTCAGCAAGTGCGATATTGGATGGGTTTGGAGGAGCAGACCTAACTATTCATAAACTTAAAAACAAGAAATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

371

Amino Acids

40.64

Weight (kDa)

8.11

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	203, 286
AclWI	GGATC	2 cut(s)	366, 624
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	5, 548, 660
AcuI	CTGAAG	2 cut(s)	726, 1023
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	6 cut(s)	245, 298, 545, 641, 667, 838
AhdI	GACNNNNNGTC	1 cut(s)	923
AjnI	CCWGG	2 cut(s)	148, 535
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	2 cut(s)	164, 931
AlwI	GGATC	2 cut(s)	366, 624
AlwNI	CAGNNNCTG	1 cut(s)	788
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	29, 425, 649
ApeKI	GCWGC	1 cut(s)	887
ApoI	RAATTY	3 cut(s)	5, 548, 660
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	62, 392
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	339
AxyI	CCTNAGG	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	976
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	1 cut(s)	874
BccI	CCATC	5 cut(s)	102, 226, 298, 641, 1052
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	2 cut(s)	150, 537
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	164, 931
BfaI	CTAG	2 cut(s)	761, 1023
BfmI	CTRYAG	1 cut(s)	601
BglI	GCCNNNNNGGC	1 cut(s)	896
BisI	GCNGC	1 cut(s)	888
BlpI	GCTNAGC	1 cut(s)	975
BlsI	GCNGC	1 cut(s)	889
Bme1390I	CCNGG	3 cut(s)	122, 150, 537
Bme18I	GGWCC	1 cut(s)	339
BmeRI	GACNNNNNGTC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	122, 150, 537
BmsI	GCATC	6 cut(s)	256, 384, 550, 607, 816, 830
Bpu10I	CCTNAGC	1 cut(s)	765
Bpu1102I	GCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	913
BpuMI	CCSGG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	824
BsaBI	GATNNNNATC	2 cut(s)	270, 398
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	365
Bse3DI	GCAATG	3 cut(s)	434, 501, 942
Bse8I	GATNNNNATC	2 cut(s)	270, 398
BseBI	CCWGG	2 cut(s)	150, 537
BseCI	ATCGAT	1 cut(s)	824
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	7 cut(s)	271, 290, 505, 596, 622, 757, 1063
BseJI	GATNNNNATC	2 cut(s)	270, 398
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	3 cut(s)	434, 501, 942
BseMII	CTCAG	6 cut(s)	40, 47, 236, 438, 783, 989
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	827, 1083
BseXI	GCAGC	1 cut(s)	874
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	31, 427, 651
BshVI	ATCGAT	1 cut(s)	824
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	122, 198
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	164, 931
BsnI	GGCC	3 cut(s)	31, 427, 651
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	4 cut(s)	358, 399, 629, 879
Bsp1720I	GCTNAGC	1 cut(s)	975
BspACI	CCGC	2 cut(s)	203, 286
BspANI	GGCC	3 cut(s)	31, 427, 651
BspCNI	CTCAG	6 cut(s)	39, 46, 235, 439, 784, 988
BspDI	ATCGAT	1 cut(s)	824
BspFNI	CGCG	1 cut(s)	203
BspPI	GGATC	2 cut(s)	366, 624
BsrDI	GCAATG	3 cut(s)	434, 501, 942
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	358, 399, 629, 879
Bst2UI	CCWGG	2 cut(s)	150, 537
Bst4CI	ACNGT	2 cut(s)	329, 784
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	8 cut(s)	26, 33, 222, 365, 447, 765, 792, 975
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	7 cut(s)	271, 290, 505, 596, 622, 757, 1063
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	4 cut(s)	361, 402, 632, 882
BstMAI	GTCTC	2 cut(s)	164, 931
BstMBI	GATC	4 cut(s)	358, 399, 629, 879
BstMWI	GCNNNNNNNGC	3 cut(s)	770, 896, 911
BstNI	CCWGG	2 cut(s)	150, 537
BstNSI	RCATGY	1 cut(s)	991
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	120, 148, 535
BstSFI	CTRYAG	1 cut(s)	601
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	874
BstX2I	RGATCY	2 cut(s)	358, 629
BstYI	RGATCY	2 cut(s)	358, 629
Bsu15I	ATCGAT	1 cut(s)	824
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	31, 427, 651
BsuTUI	ATCGAT	1 cut(s)	824
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	7 cut(s)	271, 290, 505, 596, 622, 757, 1063
BtsI	GCAGTG	2 cut(s)	177, 780
BtsIMutI	CAGTG	3 cut(s)	177, 444, 780
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	824
CviAII	CATG	3 cut(s)	403, 988, 993
DdeI	CTNAG	8 cut(s)	26, 33, 222, 365, 447, 765, 792, 975
DpnI	GATC	4 cut(s)	360, 401, 631, 881
DpnII	GATC	4 cut(s)	358, 399, 629, 879
DraI	TTTAAA	1 cut(s)	310
DriI	GACNNNNNGTC	1 cut(s)	923
EaeI	YGGCCR	1 cut(s)	649
Eam1105I	GACNNNNNGTC	1 cut(s)	923
Ecl136II	GAGCTC	1 cut(s)	974
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	2 cut(s)	726, 1023
Eco81I	CCTNAGG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	974
EcoO65I	GGTNACC	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	148, 535
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	976
FaeI	CATG	3 cut(s)	406, 991, 996
FatI	CATG	3 cut(s)	402, 987, 992
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	888
FokI	GGATG	7 cut(s)	277, 278, 512, 583, 629, 764, 1070
FriOI	GRGCYC	1 cut(s)	976
Fsp4HI	GCNGC	1 cut(s)	888
FspBI	CTAG	2 cut(s)	761, 1023
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	888
HaeIII	GGCC	3 cut(s)	31, 427, 651
HapII	CCGG	2 cut(s)	122, 198
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	406, 991, 996
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	644, 868
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	122, 198
HphI	GGTGA	2 cut(s)	62, 392
Hpy166II	GTNNAC	2 cut(s)	250, 524
Hpy188I	TCNGA	3 cut(s)	417, 510, 865
Hpy188III	TCNNGA	4 cut(s)	56, 224, 242, 627
Hpy8I	GTNNAC	2 cut(s)	250, 524
HpyAV	CCTTC	7 cut(s)	49, 58, 304, 438, 445, 566, 1047
HpyCH4III	ACNGT	2 cut(s)	329, 784
HpyCH4V	TGCA	8 cut(s)	332, 478, 494, 563, 620, 809, 821, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	770, 896, 911
HpyF3I	CTNAG	8 cut(s)	26, 33, 222, 365, 447, 765, 792, 975
Hsp92II	CATG	3 cut(s)	406, 991, 996
HspAI	GCGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	358, 399, 629, 879
LmnI	GCTCC	2 cut(s)	971, 1070
Lsp1109I	GCAGC	1 cut(s)	874
LweI	GCATC	6 cut(s)	256, 384, 550, 607, 816, 830
MaeI	CTAG	2 cut(s)	761, 1023
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	360, 401, 631, 881
MboI	GATC	4 cut(s)	358, 399, 629, 879
MboII	GAAGA	4 cut(s)	230, 557, 732, 889
MfeI	CAATTG	1 cut(s)	931
MflI	RGATCY	2 cut(s)	358, 629
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	6 cut(s)	5, 489, 548, 621, 660, 931
Mph1103I	ATGCAT	1 cut(s)	565
MseI	TTAA	4 cut(s)	309, 411, 1004, 1095
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	2 cut(s)	122, 198
MspR9I	CCNGG	3 cut(s)	122, 150, 537
MunI	CAATTG	1 cut(s)	931
MvaI	CCWGG	2 cut(s)	150, 537
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	770, 896, 911
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	4 cut(s)	358, 399, 629, 879
NlaIII	CATG	3 cut(s)	406, 991, 996
NmeAIII	GCCGAG	1 cut(s)	1054
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	991
PaeI	GCATGC	1 cut(s)	991
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	889
Psp124BI	GAGCTC	1 cut(s)	976
Psp6I	CCWGG	2 cut(s)	148, 535
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	148, 535
PspPI	GGNCC	1 cut(s)	339
PsrI	GAACNNNNNNTAC	2 cut(s)	456, 488
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	358, 629
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	976
SaqAI	TTAA	4 cut(s)	309, 411, 1004, 1095
SatI	GCNGC	1 cut(s)	888
Sau3AI	GATC	4 cut(s)	358, 399, 629, 879
Sau96I	GGNCC	1 cut(s)	339
ScrFI	CCNGG	3 cut(s)	122, 150, 537
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	6 cut(s)	256, 384, 550, 607, 816, 830
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	892
SmoI	CTYRAG	1 cut(s)	892
SphI	GCATGC	1 cut(s)	991
Sse9I	AATT	6 cut(s)	5, 489, 548, 621, 660, 931
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	203, 286
SspMI	CTAG	2 cut(s)	761, 1023
SstI	GAGCTC	1 cut(s)	976
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	3 cut(s)	120, 148, 535
TaaI	ACNGT	2 cut(s)	329, 784
TaqI	TCGA	1 cut(s)	824
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	6 cut(s)	5, 489, 548, 621, 660, 931
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	4 cut(s)	309, 411, 1004, 1095
Tru9I	TTAA	4 cut(s)	309, 411, 1004, 1095
TscAI	CASTG	3 cut(s)	184, 451, 780
TseI	GCWGC	1 cut(s)	887
TspDTI	ATGAA	3 cut(s)	158, 585, 1076
TspRI	CASTG	3 cut(s)	184, 451, 780
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	3 cut(s)	5, 548, 660
XceI	RCATGY	1 cut(s)	991
XspI	CTAG	2 cut(s)	761, 1023
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.