Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

25428138 .. 25428474

Gene Structure 337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22691.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCTACCATCCTTGAATCCATCATCGTTCCTCGCTCCTCCGCTCTGCCTTCAGCCACTCTCTCCCCAATCGCCGCCTCCTCCGTTTCTTCCCGCACCGGCCGCCTCGGATTGCCTCACTTCACTGGCCTCAAGGTCAGGGCTCTCCTTCTCTCTCTCACCGACGTTTCTCCCTCCGCCGCCATGCTTCATCTCATCTACGACCACTCCAGCTCTGACGTCATCTTCACCGTTTGCTGCAGCGGAAAGAGCCAGGTCACTCCTAGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

91

Amino Acids

9.34

Weight (kDa)

8.84

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	7 cut(s)	42, 75, 94, 103, 177, 180, 243
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
AoxI	GGCC	2 cut(s)	100, 127
ApeKI	GCWGC	2 cut(s)	237, 240
AsuHPI	GGTGA	2 cut(s)	151, 220
BanII	GRGCYC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	224, 252
BccI	CCATC	2 cut(s)	17, 29
BciT130I	CCWGG	1 cut(s)	254
BfaI	CTAG	2 cut(s)	264, 271
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	5 cut(s)	75, 103, 180, 238, 241
BlsI	GCNGC	5 cut(s)	76, 104, 181, 239, 242
Bme1390I	CCNGG	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	28, 70
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	224, 252
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	102, 129
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	99
BsnI	GGCC	2 cut(s)	102, 129
Bsp1286I	GDGCHC	1 cut(s)	145
BspACI	CCGC	7 cut(s)	42, 75, 94, 103, 177, 180, 243
BspANI	GGCC	2 cut(s)	102, 129
BspMAI	CTGCAG	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	232
BstACI	GRCGYC	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 249
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	224, 252
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	102, 129
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	98
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	8 cut(s)	5, 56, 102, 129, 143, 213, 252, 267
CviKI_1	RGCY	8 cut(s)	5, 56, 102, 129, 143, 213, 252, 267
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	1 cut(s)	187
FaiI	YATR	1 cut(s)	185
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	5 cut(s)	75, 103, 180, 238, 241
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	5 cut(s)	75, 103, 180, 238, 241
FspBI	CTAG	2 cut(s)	264, 271
GluI	GCNGC	5 cut(s)	75, 103, 180, 238, 241
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	102, 129
HapII	CCGG	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	151, 220
Hpy188I	TCNGA	2 cut(s)	110, 217
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	60, 158
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	2 cut(s)	165, 219
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 249
HpySE526I	ACGT	2 cut(s)	165, 219
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	6 cut(s)	111, 112, 124, 223, 239, 266
Lsp1109I	GCAGC	2 cut(s)	224, 252
MaeI	CTAG	2 cut(s)	264, 271
MaeII	ACGT	2 cut(s)	165, 219
MaeIII	GTNAC	1 cut(s)	256
MbiI	CCGCTC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	81, 217
MhlI	GDGCHC	1 cut(s)	145
MnlI	CCTC	8 cut(s)	42, 49, 88, 91, 116, 126, 140, 184
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	102, 249
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	76, 104, 181, 239, 242
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	242
SatI	GCNGC	5 cut(s)	75, 103, 180, 238, 241
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	5 cut(s)	138, 168, 215, 222, 258
SfcI	CTRYAG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	7 cut(s)	42, 75, 94, 103, 177, 180, 243
SspMI	CTAG	2 cut(s)	264, 271
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	2 cut(s)	168, 222
TauI	GCSGC	3 cut(s)	77, 105, 182
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	237, 240
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	130
XspI	CTAG	2 cut(s)	264, 271
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.