Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008319

Physical Location & Seq

Genomic Coordinates Forward (+)

13287315 .. 13288149

Gene Structure 835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0143600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGGAAGAGACCGAGGCGGCTCAAATGGAGGACAATTCGAAACCGCAGAGGCACGGAAGCGATAGCAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTGTGCTGATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTTCAGAGTTTGCAACCAGCAGAACCGAGTGAAGGCGGTGGTTCCGAAGAGGTTGAACGGCTCCGGCAGAGCATTGAGTCATTGAATTCGCAGCTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAAAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAACCTGATTCAAGGGCGCAGGACCTCTCTGCAAAGCTAGCTGAAGCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATAGAATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

4.58

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15360
fragaria_vesca	FvH4_3g09113 FvH4_3g20140 FvH4_4g22691
malus_domestica	MD03G1226200.v1.1 MD11G1244900.v1.1
prunus_persica	Prupe.4G183200_v2.0.a1
pyrus_communis	pycom03g17390 pycom11g21690
rosa_chinensis	RchiOBHm_Chr2g0145041 RchiOBHm_Chr5g0033941
rosa_laevigata	RLG00000033512
rosa_multiflora	Rmu_sc0001150.1_g000008 Rmu_sc0040826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046280
rosa_rugosa	Rorug05G0143500 Rorug05G0143600
rosa_samantha	Rh5AG234500 Rh5BG235000 Rh5CG265200 Rh5DG241900 Rh6BG019400
rosa_wichuraiana	Rw5G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 20, 47, 219, 305
AclWI	GGATC	1 cut(s)	414
AcsI	RAATTY	3 cut(s)	146, 158, 268
AcuI	CTGAAG	2 cut(s)	341, 408
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	179, 239, 268, 357
AluBI	AGCT	8 cut(s)	99, 121, 142, 277, 302, 382, 386, 392
AluI	AGCT	8 cut(s)	99, 121, 142, 277, 302, 382, 386, 392
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	5, 174
AlwI	GGATC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	96, 274, 302
ApoI	RAATTY	3 cut(s)	146, 158, 268
Asp700I	GAANNNNTTC	2 cut(s)	158, 183
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	108, 286, 289
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	5, 174
BfaI	CTAG	1 cut(s)	383
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	5 cut(s)	21, 97, 275, 303, 306
BlsI	GCNGC	5 cut(s)	22, 98, 276, 304, 307
BmcAI	AGTACT	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	3 cut(s)	226, 245, 348
BmsI	GCATC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
Bpu10I	CCTNAGC	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	2 cut(s)	149, 299
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	114, 185
BseXI	GCAGC	3 cut(s)	108, 286, 289
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	5, 174
Bso31I	GGTCTC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	76, 115, 406
BspACI	CCGC	5 cut(s)	5, 20, 47, 219, 305
BspCNI	CTCAG	2 cut(s)	113, 184
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	226, 245, 348
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	76, 115, 406
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst6I	CTCTTC	4 cut(s)	3, 225, 279, 423
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	100, 171, 329
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	3 cut(s)	79, 118, 409
BstMAI	GTCTC	2 cut(s)	5, 174
BstMBI	GATC	3 cut(s)	76, 115, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 314, 383
BstV1I	GCAGC	3 cut(s)	108, 286, 289
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	1 cut(s)	113
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	100, 171, 329
DpnI	GATC	3 cut(s)	78, 117, 408
DpnII	GATC	3 cut(s)	76, 115, 406
Eam1104I	CTCTTC	4 cut(s)	3, 225, 279, 423
EarI	CTCTTC	4 cut(s)	3, 225, 279, 423
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	341, 408
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRI	GAATTC	2 cut(s)	158, 268
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	116
FaiI	YATR	1 cut(s)	114
FatI	CATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	21, 97, 275, 303, 306
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	5 cut(s)	21, 97, 275, 303, 306
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	5 cut(s)	21, 97, 275, 303, 306
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	2 cut(s)	260, 353
HpaII	CCGG	1 cut(s)	247
Hpy188I	TCNGA	5 cut(s)	174, 189, 229, 321, 442
Hpy188III	TCNNGA	3 cut(s)	113, 151, 410
HpyAV	CCTTC	2 cut(s)	173, 209
HpyCH4V	TGCA	2 cut(s)	196, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 314, 383
HpyF3I	CTNAG	3 cut(s)	100, 171, 329
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	76, 115, 406
LmnI	GCTCC	2 cut(s)	139, 249
LpnPI	CCDG	6 cut(s)	87, 164, 213, 260, 350, 363
Lsp1109I	GCAGC	3 cut(s)	108, 286, 289
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	78, 117, 408
MboI	GATC	3 cut(s)	76, 115, 406
MboII	GAAGA	5 cut(s)	20, 242, 296, 347, 440
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	6 cut(s)	37, 146, 158, 268, 414, 447
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	7 cut(s)	10, 25, 45, 173, 226, 274, 380
MroXI	GAANNNNTTC	2 cut(s)	158, 183
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	102, 314, 383
NdeII	GATC	3 cut(s)	76, 115, 406
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	3 cut(s)	226, 245, 348
NmuCI	GTSAC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	41
PagI	TCATGA	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	158, 183
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	22, 98, 276, 304, 307
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	226, 245, 348
PspPI	GGNCC	1 cut(s)	367
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	5 cut(s)	21, 97, 275, 303, 306
Sau3AI	GATC	3 cut(s)	76, 115, 406
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	41
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	164, 278
SmoI	CTYRAG	2 cut(s)	164, 278
Sse9I	AATT	6 cut(s)	37, 146, 158, 268, 414, 447
SsiI	CCGC	5 cut(s)	5, 20, 47, 219, 305
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	144
TaqI	TCGA	1 cut(s)	41
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	6 cut(s)	37, 146, 158, 268, 414, 447
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	2 cut(s)	23, 308
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	96, 274, 302
Tsp45I	GTSAC	1 cut(s)	133
TspGWI	ACGGA	2 cut(s)	72, 152
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	3 cut(s)	146, 158, 268
XmnI	GAANNNNTTC	2 cut(s)	158, 183
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.