Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Forward (+)

5350814 .. 5353752

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCAGCCGCCGCAGCTGAAACCGACGTCTCTCTCCGTCGCAGATCTAACTCTCTTAACGGAAACCACACTAACGGCGTCGCCATTGACGGAACCCTAGACAACAACAACCGTCGCGTCGGAGATACAAACACTCACATGGATATATCTGCTAAGAAAACTGACAACGGCTACGCCAATGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGTCGTTCACGACGTGGACGGCGCGTGATATCGTCTACGTGGTGAGATACCATTGGATACCGTGCATGTTCGCTGCCGGACTTCTGTTCTTCATGGGCGTGGAGTACACGCTTCAGATGATTCCCGCGAGATCTGAGCCGTTCGATCTTGGGTTTGTGGTCACGCGCTCTTTGAATCGCGTATTAGCATCTTCACCGGATCTTAACACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGATGCAAACAACGTATATTGTATGGACATGGTTAGTGGAAGGACGAGCACGAGCCACCATCGCGGCTTTATTCATGTTCACTTGTCGCGGCATTCTCGGCTACTCTACTCAGCTTCCTCTCCCTCAGGACTTTCTAGGATCAGGGGTTGATTTTCCGGTGGGAAATGTCTCTTTCTTCCTCTTCTTCTCTGGCCATGTCGCCGGCTCGATGATCGCATCATTGGACATGAGAAGAATGCAGAGGTTGAGACTTGCAATGGTCTTTGACATCCTCAATGTATTACAGTCGATCAGACTGCTCGGTACAAGAGGACATTACACAATCGACCTTGCGGTTGGAGTTGGCGCTGGGATTCTCTTCGACTCATTGGCCGGAAAGTACGAAGAGATGATGAGCAAGAGACATTTAGGCACTGGTTTTAGTTTGATTTCGAAAGACTCTCTAGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

301

Amino Acids

32.98

Weight (kDa)

9.35

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtPDCT1_2	PF24788	118 - 277	2.1e-92	AtPDCT1/2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	896
AatII	GACGTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	7 cut(s)	117, 235, 338, 376, 390, 515, 540
AciI	CCGC	7 cut(s)	9, 12, 336, 429, 515, 540, 785
AclWI	GGATC	2 cut(s)	417, 598
AcoI	YGGCCR	2 cut(s)	643, 822
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	2 cut(s)	27, 78
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	3 cut(s)	317, 757, 833
AgsI	TTSAA	1 cut(s)	385
AjiI	CACGTC	1 cut(s)	225
AluBI	AGCT	2 cut(s)	17, 565
AluI	AGCT	2 cut(s)	17, 565
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	4 cut(s)	34, 625, 694, 847
AlwI	GGATC	2 cut(s)	417, 598
AoxI	GGCC	2 cut(s)	643, 822
ApeKI	GCWGC	2 cut(s)	14, 284
AspLEI	GCGC	3 cut(s)	235, 378, 800
AsuHPI	GGTGA	2 cut(s)	265, 396
AsuII	TTCGAA	1 cut(s)	884
AxyI	CCTNAGG	1 cut(s)	576
BalI	TGGCCA	1 cut(s)	645
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	26, 271
BccI	CCATC	2 cut(s)	192, 518
BceAI	ACGGC	4 cut(s)	91, 184, 246, 334
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BciVI	GTATCC	1 cut(s)	261
BcoDI	GTCTC	4 cut(s)	34, 625, 694, 847
BfaI	CTAG	3 cut(s)	98, 587, 896
BfoI	RGCGCY	1 cut(s)	801
BfuI	GTATCC	1 cut(s)	261
BglII	AGATCT	2 cut(s)	44, 341
BisI	GCNGC	7 cut(s)	9, 12, 15, 285, 429, 516, 541
BlsI	GCNGC	7 cut(s)	10, 13, 16, 286, 430, 517, 542
BmgBI	CACGTC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	3 cut(s)	407, 444, 677
Bpu14I	TTCGAA	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	250
BsaHI	GRCGYC	2 cut(s)	27, 78
BsaWI	WCCGGW	2 cut(s)	406, 607
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	1 cut(s)	871
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	714
BseGI	GGATG	3 cut(s)	203, 459, 720
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	3 cut(s)	336, 575, 590
BseNI	ACTGG	1 cut(s)	871
BseRI	GAGGAG	2 cut(s)	204, 207
BseXI	GCAGC	2 cut(s)	26, 271
BseYI	CCCAGC	1 cut(s)	800
Bsh1236I	CGCG	7 cut(s)	117, 235, 338, 376, 390, 515, 540
BshFI	GGCC	2 cut(s)	645, 824
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	5 cut(s)	288, 407, 608, 654, 825
BsmAI	GTCTC	4 cut(s)	34, 625, 694, 847
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	2 cut(s)	543, 693
BsnI	GGCC	2 cut(s)	645, 824
Bsp119I	TTCGAA	1 cut(s)	884
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
BspACI	CCGC	7 cut(s)	9, 12, 336, 429, 515, 540, 785
BspANI	GGCC	2 cut(s)	645, 824
BspCNI	CTCAG	3 cut(s)	337, 574, 589
BspFNI	CGCG	7 cut(s)	117, 235, 338, 376, 390, 515, 540
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	2 cut(s)	417, 598
BspT104I	TTCGAA	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	871
BssAI	RCCGGY	1 cut(s)	653
BssMI	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
BssNI	GRCGYC	2 cut(s)	27, 78
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	5 cut(s)	113, 273, 421, 442, 738
Bst6I	CTCTTC	3 cut(s)	638, 815, 831
BstACI	GRCGYC	2 cut(s)	27, 78
BstBAI	YACGTR	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	884
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	4 cut(s)	153, 345, 561, 576
BstF5I	GGATG	3 cut(s)	203, 459, 720
BstFNI	CGCG	7 cut(s)	117, 235, 338, 376, 390, 515, 540
BstH2I	RGCGCY	1 cut(s)	801
BstHHI	GCGC	3 cut(s)	235, 378, 800
BstKTI	GATC	7 cut(s)	47, 344, 358, 412, 593, 666, 744
BstMAI	GTCTC	4 cut(s)	34, 625, 694, 847
BstMBI	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 512, 549
BstNSI	RCATGY	1 cut(s)	280
BstUI	CGCG	7 cut(s)	117, 235, 338, 376, 390, 515, 540
BstV1I	GCAGC	2 cut(s)	26, 271
BstX2I	RGATCY	3 cut(s)	44, 341, 409
BstYI	RGATCY	3 cut(s)	44, 341, 409
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	645, 824
BtgZI	GCGATG	1 cut(s)	496
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	203, 459, 720
BtsIMutI	CAGTG	2 cut(s)	417, 864
Cac8I	GCNNGC	1 cut(s)	655
CfoI	GCGC	3 cut(s)	235, 378, 800
Cfr10I	RCCGGY	1 cut(s)	653
CseI	GACGC	3 cut(s)	67, 106, 201
Csp6I	GTAC	3 cut(s)	316, 756, 832
CviAII	CATG	7 cut(s)	139, 277, 304, 480, 526, 647, 679
CviQI	GTAC	3 cut(s)	316, 756, 832
DdeI	CTNAG	4 cut(s)	153, 345, 561, 576
DpnI	GATC	7 cut(s)	46, 343, 357, 411, 592, 665, 743
DpnII	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
DraIII	CACNNNGTG	1 cut(s)	225
DrdI	GACNNNNNNGTC	1 cut(s)	896
DseDI	GACNNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	2 cut(s)	643, 822
Eam1104I	CTCTTC	3 cut(s)	638, 815, 831
EarI	CTCTTC	3 cut(s)	638, 815, 831
Eco32I	GATATC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	7 cut(s)	142, 280, 307, 483, 529, 650, 682
FatI	CATG	7 cut(s)	138, 276, 303, 479, 525, 646, 678
FauI	CCCGC	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	7 cut(s)	9, 12, 15, 285, 429, 516, 541
FokI	GGATG	3 cut(s)	210, 466, 707
Fsp4HI	GCNGC	7 cut(s)	9, 12, 15, 285, 429, 516, 541
FspBI	CTAG	3 cut(s)	98, 587, 896
GlaI	GCGC	3 cut(s)	234, 377, 799
GluI	GCNGC	7 cut(s)	9, 12, 15, 285, 429, 516, 541
GsaI	CCCAGC	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	645, 824
HapII	CCGG	5 cut(s)	288, 407, 608, 654, 825
HgaI	GACGC	3 cut(s)	67, 106, 201
HhaI	GCGC	3 cut(s)	235, 378, 800
Hin1I	GRCGYC	2 cut(s)	27, 78
Hin1II	CATG	7 cut(s)	142, 280, 307, 483, 529, 650, 682
Hin6I	GCGC	3 cut(s)	233, 376, 798
HinP1I	GCGC	3 cut(s)	233, 376, 798
HinfI	GANTC	5 cut(s)	331, 385, 805, 815, 890
HpaII	CCGG	5 cut(s)	288, 407, 608, 654, 825
HphI	GGTGA	2 cut(s)	265, 396
Hpy166II	GTNNAC	5 cut(s)	219, 228, 247, 318, 531
Hpy188I	TCNGA	5 cut(s)	122, 188, 327, 346, 746
Hpy188III	TCNNGA	2 cut(s)	220, 578
Hpy8I	GTNNAC	5 cut(s)	219, 228, 247, 318, 531
Hpy99I	CGWCG	7 cut(s)	29, 42, 83, 117, 122, 217, 226
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	5 cut(s)	113, 273, 421, 442, 738
HpyCH4IV	ACGT	4 cut(s)	27, 224, 249, 464
HpyCH4V	TGCA	4 cut(s)	276, 457, 691, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 512, 549
HpyF3I	CTNAG	4 cut(s)	153, 345, 561, 576
HpySE526I	ACGT	4 cut(s)	27, 224, 249, 464
Hsp92I	GRCGYC	2 cut(s)	27, 78
Hsp92II	CATG	7 cut(s)	142, 280, 307, 483, 529, 650, 682
HspAI	GCGC	3 cut(s)	233, 376, 798
KroI	GCCGGC	1 cut(s)	653
KroNI	GCCGGC	1 cut(s)	655
Kzo9I	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
Lsp1109I	GCAGC	2 cut(s)	26, 271
LweI	GCATC	3 cut(s)	407, 444, 677
MaeI	CTAG	3 cut(s)	98, 587, 896
MaeII	ACGT	4 cut(s)	27, 224, 249, 464
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	7 cut(s)	46, 343, 357, 411, 592, 665, 743
MboI	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
MboII	GAAGA	8 cut(s)	292, 393, 619, 625, 628, 696, 802, 848
MflI	RGATCY	3 cut(s)	44, 341, 409
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	1 cut(s)	901
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	809, 884
MmeI	TCCRAC	3 cut(s)	100, 166, 769
MnlI	CCTC	9 cut(s)	182, 185, 188, 579, 585, 641, 687, 734, 755
Mox20I	TGGCCA	1 cut(s)	645
MroNI	GCCGGC	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	57, 414, 904
MslI	CAYNNNNRTG	2 cut(s)	137, 308
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	5 cut(s)	288, 407, 608, 654, 825
Mva1269I	GAATGC	2 cut(s)	543, 693
MvnI	CGCG	7 cut(s)	117, 235, 338, 376, 390, 515, 540
MwoI	GCNNNNNNNGC	3 cut(s)	14, 512, 549
NaeI	GCCGGC	1 cut(s)	655
NdeII	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
NgoMIV	GCCGGC	1 cut(s)	653
NlaIII	CATG	7 cut(s)	142, 280, 307, 483, 529, 650, 682
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	884
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PctI	GAATGC	2 cut(s)	543, 693
PdiI	GCCGGC	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	331, 385, 805
PkrI	GCNGC	7 cut(s)	10, 13, 16, 286, 430, 517, 542
PleI	GAGTC	2 cut(s)	809, 884
PpsI	GAGTC	2 cut(s)	809, 884
Ppu21I	YACGTR	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	800
PspN4I	GGNNCC	1 cut(s)	94
PsuI	RGATCY	3 cut(s)	44, 341, 409
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	3 cut(s)	317, 757, 833
RsaNI	GTAC	3 cut(s)	316, 756, 832
RseI	CAYNNNNRTG	2 cut(s)	137, 308
SaqAI	TTAA	3 cut(s)	57, 414, 904
SatI	GCNGC	7 cut(s)	9, 12, 15, 285, 429, 516, 541
Sau3AI	GATC	7 cut(s)	44, 341, 355, 409, 590, 663, 741
SchI	GAGTC	2 cut(s)	809, 884
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	8 cut(s)	19, 30, 227, 252, 467, 567, 698, 783
SfaNI	GCATC	3 cut(s)	407, 444, 677
SfuI	TTCGAA	1 cut(s)	884
SmiMI	CAYNNNNRTG	2 cut(s)	137, 308
Sse9I	AATT	1 cut(s)	901
SsiI	CCGC	7 cut(s)	9, 12, 336, 429, 515, 540, 785
SspMI	CTAG	3 cut(s)	98, 587, 896
TaaI	ACNGT	5 cut(s)	113, 273, 421, 442, 738
TaiI	ACGT	4 cut(s)	30, 227, 252, 467
TaqI	TCGA	6 cut(s)	354, 659, 740, 777, 813, 884
TasI	AATT	1 cut(s)	901
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	5 cut(s)	11, 14, 431, 518, 543
TfiI	GAWTC	3 cut(s)	331, 385, 805
Tru1I	TTAA	3 cut(s)	57, 414, 904
Tru9I	TTAA	3 cut(s)	57, 414, 904
TscAI	CASTG	2 cut(s)	424, 871
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	14, 284
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	292, 514
TspGWI	ACGGA	3 cut(s)	26, 75, 105
TspRI	CASTG	2 cut(s)	424, 871
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	3 cut(s)	98, 587, 896
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.