Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000187.1

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Reverse (-)

80030 .. 80724

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000187.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgcagacaacgtatatattgtggacgtggctaatcgagggccgtccaagagccaccatcgccgccctatttatgttcacttgccggggaatccttggctactccacccaacttccgttgcctcagggatttttggggtcgggagcagacttcccggttgggaacgtatcatttttcttgttctactccgggcatgtagcagggtctgtgattgcatccctcgacatgagaagaatgcagaggtgggaattggcatggacatttgatgcattgaatgtgttgcaagctgtgagattgttagggactagaggacactacacaatagacttggcggttggggttggggccggtattctctttgattctctggcagggaagtatgaagaaagcaagagactaaattcaaaagtagcttcaactactagtaatggtgccaaagaggctttgtttccattagcagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

154

Amino Acids

16.86

Weight (kDa)

8.85

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	2 cut(s)	63, 332
AcsI	RAATTY	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	274, 405, 417
AhlI	ACTAGT	1 cut(s)	422
AjiI	CACGTC	1 cut(s)	27
AluBI	AGCT	2 cut(s)	287, 413
AluI	AGCT	2 cut(s)	287, 413
Alw26I	GTCTC	1 cut(s)	388
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	40, 345
ApoI	RAATTY	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	40, 345
AsuC2I	CCSGG	3 cut(s)	86, 155, 190
AxyI	CCTNAGG	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	431
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	27
BcnI	CCSGG	3 cut(s)	86, 155, 190
BcoDI	GTCTC	1 cut(s)	388
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	2 cut(s)	306, 423
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	3 cut(s)	86, 155, 190
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	40, 345
BmiI	GGNNCC	2 cut(s)	346, 433
BmrFI	CCNGG	3 cut(s)	86, 155, 190
BmsI	GCATC	2 cut(s)	224, 256
BpuMI	CCSGG	3 cut(s)	86, 155, 190
BsaJI	CCNNGG	2 cut(s)	85, 94
Bse118I	RCCGGY	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	85, 94
BseGI	GGATG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	42, 347
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	4 cut(s)	85, 155, 189, 348
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	42, 347
BspACI	CCGC	2 cut(s)	63, 332
BspANI	GGCC	2 cut(s)	42, 347
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	346, 433
BspT107I	GGYRCC	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	85, 94
BssT1I	CCWWGG	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 440
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	84, 153, 188
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	42, 347
BtgZI	GCGATG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	40, 345
CviAII	CATG	3 cut(s)	194, 226, 255
CviJI	RGCY	8 cut(s)	31, 42, 53, 99, 287, 347, 413, 443
CviKI_1	RGCY	8 cut(s)	31, 42, 53, 99, 287, 347, 413, 443
DdeI	CTNAG	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	197, 229, 258
FaiI	YATR	7 cut(s)	15, 17, 74, 195, 227, 256, 381
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	193, 225, 254
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	306, 423
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	42, 347
HapII	CCGG	4 cut(s)	85, 155, 189, 348
Hin1II	CATG	3 cut(s)	197, 229, 258
HinfI	GANTC	2 cut(s)	90, 362
HpaII	CCGG	4 cut(s)	85, 155, 189, 348
Hpy166II	GTNNAC	2 cut(s)	24, 78
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	2 cut(s)	24, 78
HpyCH4IV	ACGT	3 cut(s)	11, 26, 165
HpyCH4V	TGCA	5 cut(s)	4, 215, 238, 269, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 440
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	3 cut(s)	11, 26, 165
Hsp92II	CATG	3 cut(s)	197, 229, 258
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	8 cut(s)	98, 110, 168, 186, 202, 353, 357, 361
LweI	GCATC	2 cut(s)	224, 256
MaeI	CTAG	2 cut(s)	306, 423
MaeII	ACGT	3 cut(s)	11, 26, 165
MboII	GAAGA	2 cut(s)	243, 395
MluCI	AATT	2 cut(s)	248, 400
MnlI	CCTC	6 cut(s)	31, 132, 230, 234, 302, 433
Mph1103I	ATGCAT	1 cut(s)	271
MspI	CCGG	4 cut(s)	85, 155, 189, 348
MspR9I	CCNGG	3 cut(s)	86, 155, 190
Mva1269I	GAATGC	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	59, 440
NciI	CCSGG	3 cut(s)	86, 155, 190
NlaIII	CATG	3 cut(s)	197, 229, 258
NlaIV	GGNNCC	2 cut(s)	346, 433
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	197
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	90, 362
PkrI	GCNGC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	346, 433
PspPI	GGNCC	2 cut(s)	40, 345
PstNI	CAGNNNCTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	63
Sau96I	GGNCC	2 cut(s)	40, 345
ScrFI	CCNGG	3 cut(s)	86, 155, 190
SetI	ASST	6 cut(s)	14, 29, 168, 245, 289, 415
SfaNI	GCATC	2 cut(s)	224, 256
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	2 cut(s)	248, 400
SsiI	CCGC	2 cut(s)	63, 332
SspMI	CTAG	2 cut(s)	306, 423
StyD4I	CCNGG	3 cut(s)	84, 153, 188
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	3 cut(s)	14, 29, 168
TaqI	TCGA	2 cut(s)	36, 222
TasI	AATT	2 cut(s)	248, 400
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	90, 362
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	105
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	1 cut(s)	197
XspI	CTAG	2 cut(s)	306, 423
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.