Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Forward (+)

22901345 .. 22903490

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAACGGCACCGTTTCGGCCCTCACTTCTCGCCGCCACAAACGACCATCCCCTACCCCAACTCCCGCCAACGCCGCCATGTCCAAGAATCCCGCCCCCGTCCACAAGGCCTCCTTCATGACGTGGACGCTGCATGACGCCGTCCACGTCGCCAGGCACCACTGGATCCCTTGCTTCTTCGCAATGGGGCTCCTCTTCTTCATGGGCGTGGAATACACGCTCCGCATGGTGCCCTCCTCGGCTCCGCCGTTTGATGTCGGCTTCGTCACCACGCGCTGGCTACACCTGCTGCTGGCGTCCAGCCCCAACCTTAATACATTGCTCGCCGGGCTCAACACGGTGTTTGTGGGGATGCAGACGACGTACATATTGTGGACGTGGCTAATCGAGGGCCGTCCGAGAGCCACCATTGCCGCCCTGTTTATGTTCACTTGCCGGGGAATCCTTGGCTACTCTACCCAACTTCCATTGCCTCAGGGATTTTTGGGGTCGGGAGCGGACTTCCCGGTTGGGAATGTATCGTTTTTCTTGTTCTACTCCGGGCATGTAGCAGGGTCGGTGATTGCATCCCTTGACATGAGAAGAATGCAGAGGTGGGAATTAGCATGGACATTTGATGCACTCAATCTGTTACAAGCTGTGAGATTGTTAGGGACAAGAGGACACTACACAATAGACTTGGCGGTTGGGGTTGGGGCCGGTATTCTCTTTGATTCTCTGGCAGGGAAGTATGAAGAAAGCAAGCGATTAATTTCTAAAGTAGTTTCAACCACTAGCAATGGTGCCAAGGAGGCTTTGTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

269

Amino Acids

29.45

Weight (kDa)

9.94

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtPDCT1_2	PF24788	84 - 243	1.2e-91	AtPDCT1/2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	294
AccB1I	GGYRCC	4 cut(s)	8, 156, 229, 782
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccBSI	CCGCTC	1 cut(s)	497
AccII	CGCG	1 cut(s)	274
AciI	CCGC	9 cut(s)	34, 66, 75, 93, 223, 245, 414, 497, 683
AclWI	GGATC	2 cut(s)	160, 173
AcyI	GRCGYC	2 cut(s)	138, 296
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	276, 292
AgsI	TTSAA	1 cut(s)	768
AjiI	CACGTC	3 cut(s)	123, 148, 378
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	638
AluI	AGCT	1 cut(s)	638
AlwI	GGATC	2 cut(s)	160, 173
AoxI	GGCC	4 cut(s)	18, 108, 391, 696
ApeKI	GCWGC	2 cut(s)	130, 289
AseI	ATTAAT	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	19, 391, 696
AsuC2I	CCSGG	4 cut(s)	328, 437, 506, 541
AsuHPI	GGTGA	2 cut(s)	259, 571
AxyI	CCTNAGG	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	165
BanI	GGYRCC	4 cut(s)	8, 156, 229, 782
BanII	GRGCYC	2 cut(s)	192, 333
BbvI	GCAGC	2 cut(s)	117, 276
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	4 cut(s)	22, 125, 232, 378
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	4 cut(s)	328, 437, 506, 541
BfaI	CTAG	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	791
BisI	GCNGC	5 cut(s)	34, 75, 131, 290, 414
BlsI	GCNGC	5 cut(s)	35, 76, 132, 291, 415
Bme1390I	CCNGG	5 cut(s)	154, 328, 437, 506, 541
BmgBI	CACGTC	3 cut(s)	123, 148, 378
BmgT120I	GGNCC	3 cut(s)	19, 391, 696
BmiI	GGNNCC	8 cut(s)	10, 158, 167, 191, 231, 243, 697, 784
BmrFI	CCNGG	5 cut(s)	154, 328, 437, 506, 541
BmsI	GCATC	3 cut(s)	342, 575, 607
BpuMI	CCSGG	4 cut(s)	328, 437, 506, 541
BsaHI	GRCGYC	2 cut(s)	138, 296
BsaJI	CCNNGG	4 cut(s)	237, 436, 445, 786
BsaXI	ACNNNNNCTCC	5 cut(s)	46, 76, 95, 125, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 292
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	5 cut(s)	189, 317, 408, 467, 784
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	4 cut(s)	237, 436, 445, 786
BseGI	GGATG	3 cut(s)	47, 357, 566
BseLI	CCNNNNNNNGG	2 cut(s)	276, 292
BseMI	GCAATG	5 cut(s)	189, 317, 408, 467, 784
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	2 cut(s)	182, 226
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	117, 276
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	4 cut(s)	20, 110, 393, 698
BshNI	GGYRCC	4 cut(s)	8, 156, 229, 782
BsiSI	CCGG	5 cut(s)	327, 436, 506, 540, 699
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	276, 292
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	4 cut(s)	20, 110, 393, 698
Bsp1286I	GDGCHC	3 cut(s)	192, 234, 333
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	9 cut(s)	34, 66, 75, 93, 223, 245, 414, 497, 683
BspANI	GGCC	4 cut(s)	20, 110, 393, 698
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	8 cut(s)	10, 158, 167, 191, 231, 243, 697, 784
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	160, 173
BspT107I	GGYRCC	4 cut(s)	8, 156, 229, 782
BsrBI	CCGCTC	1 cut(s)	497
BsrDI	GCAATG	5 cut(s)	189, 317, 408, 467, 784
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	4 cut(s)	237, 436, 445, 786
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	2 cut(s)	138, 296
BssT1I	CCWWGG	2 cut(s)	445, 786
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	13, 340
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	2 cut(s)	138, 296
BstC8I	GCNNGC	4 cut(s)	278, 294, 324, 743
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	47, 357, 566
BstFNI	CGCG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 286, 328, 410, 791
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	5 cut(s)	152, 326, 435, 504, 539
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	117, 276
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	20, 110, 393, 698
BtrI	CACGTC	3 cut(s)	123, 148, 378
BtsCI	GGATG	3 cut(s)	47, 357, 566
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	4 cut(s)	278, 294, 324, 743
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	3 cut(s)	19, 391, 696
CseI	GACGC	3 cut(s)	136, 146, 285
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	8 cut(s)	79, 118, 134, 202, 226, 545, 577, 606
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	445, 786
Eco147I	AGGCCT	1 cut(s)	110
Eco24I	GRGCYC	2 cut(s)	192, 333
Eco81I	CCTNAGG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	445, 786
EcoT38I	GRGCYC	2 cut(s)	192, 333
ErhI	CCWWGG	2 cut(s)	445, 786
FaeI	CATG	8 cut(s)	82, 121, 137, 205, 229, 548, 580, 609
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	8 cut(s)	78, 117, 133, 201, 225, 544, 576, 605
FauI	CCCGC	2 cut(s)	73, 100
Fnu4HI	GCNGC	5 cut(s)	34, 75, 131, 290, 414
FokI	GGATG	3 cut(s)	34, 364, 553
FriOI	GRGCYC	2 cut(s)	192, 333
Fsp4HI	GCNGC	5 cut(s)	34, 75, 131, 290, 414
FspBI	CTAG	1 cut(s)	774
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	5 cut(s)	34, 75, 131, 290, 414
HaeIII	GGCC	4 cut(s)	20, 110, 393, 698
HapII	CCGG	5 cut(s)	327, 436, 506, 540, 699
HgaI	GACGC	3 cut(s)	136, 146, 285
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	2 cut(s)	138, 296
Hin1II	CATG	8 cut(s)	82, 121, 137, 205, 229, 548, 580, 609
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	88, 441, 713
HpaII	CCGG	5 cut(s)	327, 436, 506, 540, 699
HphI	GGTGA	2 cut(s)	259, 571
Hpy166II	GTNNAC	5 cut(s)	103, 126, 145, 375, 429
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	2 cut(s)	118, 492
Hpy8I	GTNNAC	5 cut(s)	103, 126, 145, 375, 429
Hpy99I	CGWCG	2 cut(s)	152, 364
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	13, 340
HpyCH4IV	ACGT	4 cut(s)	122, 147, 362, 377
HpyCH4V	TGCA	5 cut(s)	133, 355, 566, 589, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 286, 328, 410, 791
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	4 cut(s)	122, 147, 362, 377
Hsp92I	GRCGYC	2 cut(s)	138, 296
Hsp92II	CATG	8 cut(s)	82, 121, 137, 205, 229, 548, 580, 609
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	4 cut(s)	195, 225, 247, 494
Lsp1109I	GCAGC	2 cut(s)	117, 276
LweI	GCATC	3 cut(s)	342, 575, 607
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	4 cut(s)	122, 147, 362, 377
MaeIII	GTNAC	2 cut(s)	265, 630
MalI	GATC	1 cut(s)	167
MbiI	CCGCTC	1 cut(s)	497
MboI	GATC	1 cut(s)	165
MboII	GAAGA	5 cut(s)	169, 187, 190, 594, 746
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	3 cut(s)	192, 234, 333
MluCI	AATT	2 cut(s)	599, 750
MseI	TTAA	2 cut(s)	312, 749
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	5 cut(s)	327, 436, 506, 540, 699
MspR9I	CCNGG	5 cut(s)	154, 328, 437, 506, 541
Mva1269I	GAATGC	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	5 cut(s)	74, 286, 328, 410, 791
NciI	CCSGG	4 cut(s)	328, 437, 506, 541
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	8 cut(s)	82, 121, 137, 205, 229, 548, 580, 609
NlaIV	GGNNCC	8 cut(s)	10, 158, 167, 191, 231, 243, 697, 784
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	548
PagI	TCATGA	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 245
PctI	GAATGC	1 cut(s)	591
PfeI	GAWTC	3 cut(s)	88, 441, 713
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	35, 76, 132, 291, 415
PshBI	ATTAAT	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	8 cut(s)	10, 158, 167, 191, 231, 243, 697, 784
PspPI	GGNCC	3 cut(s)	19, 391, 696
PsuI	RGATCY	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	312, 749
SatI	GCNGC	5 cut(s)	34, 75, 131, 290, 414
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	3 cut(s)	19, 391, 696
ScrFI	CCNGG	5 cut(s)	154, 328, 437, 506, 541
SduI	GDGCHC	3 cut(s)	192, 234, 333
SetI	ASST	8 cut(s)	125, 150, 288, 312, 365, 380, 596, 640
SfaNI	GCATC	3 cut(s)	342, 575, 607
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	599, 750
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	9 cut(s)	34, 66, 75, 93, 223, 245, 414, 497, 683
SspMI	CTAG	1 cut(s)	774
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	5 cut(s)	152, 326, 435, 504, 539
StyI	CCWWGG	2 cut(s)	445, 786
TaaI	ACNGT	2 cut(s)	13, 340
TaiI	ACGT	4 cut(s)	125, 150, 365, 380
TaqI	TCGA	1 cut(s)	387
TasI	AATT	2 cut(s)	599, 750
TauI	GCSGC	3 cut(s)	36, 77, 416
TfiI	GAWTC	3 cut(s)	88, 441, 713
Tru1I	TTAA	2 cut(s)	312, 749
Tru9I	TTAA	2 cut(s)	312, 749
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	130, 289
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	17, 106, 190, 747
TspRI	CASTG	1 cut(s)	167
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	276
VspI	ATTAAT	1 cut(s)	749
XceI	RCATGY	1 cut(s)	548
XspI	CTAG	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.