Prupe.3G087400_v2.0.a1

Phosphatidylcholine diacylglycerol cholinephosphotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014419
Physical Location & Seq
Reverse (-)
6474523 .. 6476638
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G087400.1

Sequence Viewer

Length: 735 bp
ATGTCGTCTTCTTCTTCCTCCAAGAAGCTCCATGTCTACGGCGGCAAGGCCTCCTTCATGACCTGGAGGCTGCATGACGTCCTCTACGTGGCCAAGCACCATTGGATACCCTGTGTCTTCGCAATGGGCTTCCTCTTCTTCGGGAGCGTCGAGTTCACGCTCGGAATGGTTCCCTCGTCGTCTCCGCCCTTTGATGTCGGCTTCGTCACCACGCGCTCCCTCCACCTCCTCCTGGCTTCCAAGCCCAAGCTCAATACATTTCTCGCTGGTTTTAACACGGTGTATGTGGGAATGCAGATAACATATATTCTATGGACATGGCTAGTAGAGGGCCGCCCAAGAGCCACAATCTCAGCGCTCTTCATGTCCACATGCCGGGGCATCCTCGGCTACTCTACCCAACTTCCATTGCCTCAGGGATTTTTGGGGTCAGGCGCAGACTTCCCAGTTGGCAATGTGTCGTTTTTTCTTTTCTTCTCAGGGCATGTAGCAGGGTGTGCGATTGCATCTTTGGACATGAGGAGAATGCAGAGATGGGAAATGGCATGGACATTTGATGCACTGAATGTGCTACAAGCACTGAGGTTGCTGGGAACAAGGGGCCACTACACAATAGACTTGGCTGTGGGGGTTGGGGCTGGTTTTCTCTTTGATTCTCTGGCAGGCAAGTATGAAGAAAGCAAGAGATCAAAAGCACCTACACCAAATGGTACCAAAGAGGCTTTCTTTCTGTGA

Protein Analysis

245

Amino Acids

26.92

Weight (kDa)

9.57

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15820
fragaria_vesca FvH4_6g29670
malus_domestica MD17G1212200.v1.1
prunus_persica Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis pycom17g21710
rosa_chinensis RchiOBHm_Chr2g0135261
rosa_laevigata RLG00000019458
rosa_multiflora Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii Rroxscaffold_2G00109330
rosa_rugosa Rorug02G0324400
rosa_samantha Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana Rw2G030630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 710
AccI GTMKAC 1 cut(s) 36
AccII CGCG 1 cut(s) 214
AciI CCGC 3 cut(s) 42, 185, 334
AcoI YGGCCR 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 712
AfeI AGCGCT 1 cut(s) 357
AfiI CCNNNNNNNGG 3 cut(s) 88, 232, 375
AjnI CCWGG 2 cut(s) 62, 231
AjuI GAANNNNNNNTTGG 1 cut(s) 707
AluBI AGCT 2 cut(s) 28, 250
AluI AGCT 2 cut(s) 28, 250
Alw26I GTCTC 1 cut(s) 186
Aor51HI AGCGCT 1 cut(s) 357
AoxI GGCC 4 cut(s) 48, 90, 331, 601
ApeKI GCWGC 1 cut(s) 70
Asp718I GGTACC 1 cut(s) 710
AspLEI GCGC 3 cut(s) 216, 358, 437
AspS9I GGNCC 2 cut(s) 331, 601
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 414
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 1 cut(s) 710
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 528
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 64, 233
BciVI GTATCC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 359
BfuI GTATCC 1 cut(s) 99
BisI GCNGC 3 cut(s) 43, 71, 334
BlsI GCNGC 3 cut(s) 44, 72, 335
Bme1390I CCNGG 3 cut(s) 64, 233, 377
BmgT120I GGNCC 2 cut(s) 331, 601
BmiI GGNNCC 3 cut(s) 171, 602, 712
BmrFI CCNGG 3 cut(s) 64, 233, 377
BmrI ACTGGG 1 cut(s) 440
BmsI GCATC 3 cut(s) 390, 515, 547
BmuI ACTGGG 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 376, 385
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 232, 375
Bse1I ACTGG 1 cut(s) 446
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 3 cut(s) 129, 407, 460
BseBI CCWGG 2 cut(s) 64, 233
BseDI CCNNGG 2 cut(s) 376, 385
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 88, 232, 375
BseMI GCAATG 3 cut(s) 129, 407, 460
BseMII CTCAG 4 cut(s) 366, 428, 492, 572
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 2 cut(s) 218, 535
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 4 cut(s) 50, 92, 333, 603
BshNI GGYRCC 1 cut(s) 710
BsiSI CCGG 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 88, 232, 375
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsmI GAATGC 2 cut(s) 297, 531
BsnI GGCC 4 cut(s) 50, 92, 333, 603
Bsp143I GATC 1 cut(s) 686
BspACI CCGC 3 cut(s) 42, 185, 334
BspANI GGCC 4 cut(s) 50, 92, 333, 603
BspCNI CTCAG 4 cut(s) 365, 427, 491, 573
BspFNI CGCG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 171, 602, 712
BspQI GCTCTTC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 710
BsrDI GCAATG 3 cut(s) 129, 407, 460
BsrI ACTGG 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 376, 385
BssMI GATC 1 cut(s) 686
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 64, 233
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 140, 365
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 497
BstBAI YACGTR 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 4 cut(s) 352, 414, 478, 581
BstF5I GGATG 1 cut(s) 381
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 3 cut(s) 216, 358, 437
BstKTI GATC 1 cut(s) 689
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 1 cut(s) 686
BstMWI GCNNNNNNNGC 2 cut(s) 387, 497
BstNI CCWGG 2 cut(s) 64, 233
BstNSI RCATGY 2 cut(s) 375, 488
BstSCI CCNGG 3 cut(s) 62, 231, 375
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 4 cut(s) 50, 92, 333, 603
BtsCI GGATG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 560, 578
Cac8I GCNNGC 1 cut(s) 664
CciI TCATGA 1 cut(s) 57
CfoI GCGC 3 cut(s) 216, 358, 437
Cfr13I GGNCC 2 cut(s) 331, 601
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 711
CviAII CATG 9 cut(s) 32, 58, 74, 318, 364, 372, 485, 517, 546
CviQI GTAC 1 cut(s) 711
DdeI CTNAG 4 cut(s) 352, 414, 478, 581
DpnI GATC 1 cut(s) 688
DpnII GATC 1 cut(s) 686
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 140, 365
EarI CTCTTC 2 cut(s) 140, 365
EciI GGCGGA 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 357
Eco81I CCTNAGG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 62, 231
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 9 cut(s) 35, 61, 77, 321, 367, 375, 488, 520, 549
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 9 cut(s) 31, 57, 73, 317, 363, 371, 484, 516, 545
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 43, 71, 334
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 3 cut(s) 43, 71, 334
FspBI CTAG 1 cut(s) 323
GlaI GCGC 3 cut(s) 215, 357, 436
GluI GCNGC 3 cut(s) 43, 71, 334
GsaI CCCAGC 1 cut(s) 593
GsuI CTGGAG 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 4 cut(s) 50, 92, 333, 603
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 136
HhaI GCGC 3 cut(s) 216, 358, 437
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 9 cut(s) 35, 61, 77, 321, 367, 375, 488, 520, 549
Hin6I GCGC 3 cut(s) 214, 356, 435
HinP1I GCGC 3 cut(s) 214, 356, 435
HinfI GANTC 1 cut(s) 653
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 37, 156, 369
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 58, 142
Hpy8I GTNNAC 3 cut(s) 37, 156, 369
Hpy99I CGWCG 2 cut(s) 152, 181
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 78, 87
HpyCH4V TGCA 5 cut(s) 73, 295, 506, 529, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 497
HpyF3I CTNAG 4 cut(s) 352, 414, 478, 581
HpySE526I ACGT 2 cut(s) 78, 87
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 9 cut(s) 35, 61, 77, 321, 367, 375, 488, 520, 549
HspAI GCGC 3 cut(s) 214, 356, 435
KpnI GGTACC 1 cut(s) 714
Kzo9I GATC 1 cut(s) 686
LguI GCTCTTC 1 cut(s) 365
LmnI GCTCC 3 cut(s) 33, 144, 221
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 3 cut(s) 390, 515, 547
MaeI CTAG 1 cut(s) 323
MaeII ACGT 2 cut(s) 78, 87
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 688
MboI GATC 1 cut(s) 686
MboII GAAGA 8 cut(s) 3, 6, 109, 127, 130, 352, 466, 686
MlsI TGGCCA 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MseI TTAA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 3 cut(s) 64, 233, 377
Mva1269I GAATGC 2 cut(s) 297, 531
MvaI CCWGG 2 cut(s) 64, 233
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 387, 497
NciI CCSGG 1 cut(s) 377
NdeII GATC 1 cut(s) 686
NlaIII CATG 9 cut(s) 35, 61, 77, 321, 367, 375, 488, 520, 549
NlaIV GGNNCC 3 cut(s) 171, 602, 712
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 2 cut(s) 375, 488
PagI TCATGA 1 cut(s) 57
PceI AGGCCT 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 365
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 147
PctI GAATGC 2 cut(s) 297, 531
PfeI GAWTC 1 cut(s) 653
PkrI GCNGC 3 cut(s) 44, 72, 335
Ppu21I YACGTR 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 62, 231
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 2 cut(s) 62, 231
PspN4I GGNNCC 3 cut(s) 171, 602, 712
PspPI GGNCC 2 cut(s) 331, 601
RsaI GTAC 1 cut(s) 712
RsaNI GTAC 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 3 cut(s) 43, 71, 334
Sau3AI GATC 1 cut(s) 686
Sau96I GGNCC 2 cut(s) 331, 601
ScrFI CCNGG 3 cut(s) 64, 233, 377
SetI ASST 8 cut(s) 30, 65, 81, 90, 228, 252, 587, 700
SfaNI GCATC 3 cut(s) 390, 515, 547
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 3 cut(s) 42, 185, 334
SspMI CTAG 1 cut(s) 323
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 3 cut(s) 62, 231, 375
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 81, 90
TaqI TCGA 1 cut(s) 150
TauI GCSGC 2 cut(s) 45, 336
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 567, 585
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 46, 352, 687
TspRI CASTG 2 cut(s) 567, 585
XceI RCATGY 2 cut(s) 375, 488
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 1 cut(s) 323
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.