Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Reverse (-)

20162069 .. 20163524

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAACGGCGCCGTTTCGTCCCTCAAGCCTCGGCACAAAAGGGTCCCAAACGGCAAGCCCATTCGCGTCGTTTCCCCTTCGCCCGCAGACCACAACGAGGAGGCGATGTATTCTTCTTCTAAGGCCAAGAAGATCGGTCTCAACGGCGGCGGCAAGGCCTCCTTCATGACGTGGAGGCTGCATGACGCCGTCCACGTGGCCAAACACCATTGGATACCCTGCCTCTTCGCAATGGGGGTCCTCTTCTTCATGGGCGTGGAGTACACGCTCCGGATGGTGCCGTCGTCGTCGCCGCCGTTCGATATCGGGTTCGTCACCACCCGCTCGCTCCACCTCCTCCTGGCTTCCAAGCCCAAGCTTAACACCTTGCTCGCTGGCCTTAACACGGTGTTTGTGGCAATGCAGACCACATATATACTATGGGCATGGCTAGTAGAGGGACGCCCAAGACCCACAATCGCGGCCGTCTTCATGTTCACATGCCGGGGCATCCTCGGCTACTCCACCCAACTTCCATTGCCTCAGGGGTTTTTGGGGTCAGGAGCGGACTTCCCAGTCGGGAATGTGTCGTTTTTCCTGTTCTTCTCGGGGCATGTAGCCGGGTCTGTGATTGCATCCTTGGATATGAGAAGAATGCAGAGGTGGGAAATGGCATGGATATTCGATGCCCTCAATGTCCTGCAATCGGTGAGGCTGCTGGGGACAAGAGGGCACTACACGATAGACTTGGCCGTGGGGGTTGGAGCCGGTTTTCTGTTTGATTCTCTGGCCGGAAAGTATGAGGAAAGCAAGAGATCAACTTCTACCAAAGAGGCTCTGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

276

Amino Acids

30.24

Weight (kDa)

9.96

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccB1I	GGYRCC	2 cut(s)	8, 277
AccBSI	CCGCTC	2 cut(s)	324, 545
AccII	CGCG	2 cut(s)	66, 461
AccIII	TCCGGA	1 cut(s)	270
AciI	CCGC	7 cut(s)	84, 147, 150, 293, 322, 461, 545
AcoI	YGGCCR	4 cut(s)	198, 462, 729, 768
AcvI	CACGTG	1 cut(s)	196
AcyI	GRCGYC	3 cut(s)	9, 186, 442
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	4 cut(s)	97, 340, 385, 685
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	586
Aor13HI	TCCGGA	1 cut(s)	270
AoxI	GGCC	7 cut(s)	123, 156, 198, 376, 462, 729, 768
ApeKI	GCWGC	2 cut(s)	178, 694
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	43, 238
AsuC2I	CCSGG	2 cut(s)	485, 601
AsuHPI	GGTGA	2 cut(s)	307, 700
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	2 cut(s)	43, 238
AxyI	CCTNAGG	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	714
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	8, 277
BbrPI	CACGTG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	165, 681
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	8 cut(s)	22, 67, 160, 173, 265, 280, 449, 716
BciT130I	CCWGG	1 cut(s)	341
BciVI	GTATCC	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	485, 601
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	207
BisI	GCNGC	6 cut(s)	148, 151, 179, 293, 462, 695
BlsI	GCNGC	6 cut(s)	149, 152, 180, 294, 463, 696
Bme1390I	CCNGG	3 cut(s)	341, 485, 601
Bme18I	GGWCC	2 cut(s)	43, 238
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	43, 238
BmiI	GGNNCC	6 cut(s)	10, 44, 45, 239, 279, 745
BmrFI	CCNGG	3 cut(s)	341, 485, 601
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	3 cut(s)	498, 623, 655
BmuI	ACTGGG	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	485, 601
BsaAI	YACGTR	1 cut(s)	196
BsaHI	GRCGYC	3 cut(s)	9, 186, 442
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	5 cut(s)	29, 484, 493, 618, 732
BsaWI	WCCGGW	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 340, 385, 685
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	554
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	3 cut(s)	237, 405, 515
BseAI	TCCGGA	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	5 cut(s)	29, 484, 493, 618, 732
BseGI	GGATG	3 cut(s)	279, 489, 614
BseLI	CCNNNNNNNGG	4 cut(s)	97, 340, 385, 685
BseMI	GCAATG	3 cut(s)	237, 405, 515
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	113, 326
BseSI	GKGCMC	1 cut(s)	714
BseX3I	CGGCCG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	165, 681
BseYI	CCCAGC	1 cut(s)	697
Bsh1236I	CGCG	2 cut(s)	66, 461
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	7 cut(s)	125, 158, 200, 378, 464, 731, 770
BshNI	GGYRCC	2 cut(s)	8, 277
BsiEI	CGRYCG	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	5 cut(s)	271, 484, 600, 747, 771
BslFI	GGGAC	4 cut(s)	4, 29, 453, 715
BslI	CCNNNNNNNGG	4 cut(s)	97, 340, 385, 685
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	4 cut(s)	4, 29, 453, 715
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	7 cut(s)	125, 158, 200, 378, 464, 731, 770
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp13I	TCCGGA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	132, 794
BspACI	CCGC	7 cut(s)	84, 147, 150, 293, 322, 461, 545
BspANI	GGCC	7 cut(s)	125, 158, 200, 378, 464, 731, 770
BspCNI	CTCAG	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	66, 461
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	6 cut(s)	10, 44, 45, 239, 279, 745
BspT107I	GGYRCC	2 cut(s)	8, 277
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	2 cut(s)	324, 545
BsrDI	GCAATG	3 cut(s)	237, 405, 515
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	554
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	5 cut(s)	29, 484, 493, 618, 732
BssMI	GATC	2 cut(s)	132, 794
BssNI	GRCGYC	3 cut(s)	9, 186, 442
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	230, 248
BstACI	GRCGYC	3 cut(s)	9, 186, 442
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	5 cut(s)	56, 84, 326, 372, 376
BstDEI	CTNAG	2 cut(s)	120, 522
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	3 cut(s)	279, 489, 614
BstFNI	CGCG	2 cut(s)	66, 461
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	135, 797
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	132, 794
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	2 cut(s)	483, 596
BstSCI	CCNGG	3 cut(s)	339, 483, 599
BstSLI	GKGCMC	1 cut(s)	714
BstUI	CGCG	2 cut(s)	66, 461
BstV1I	GCAGC	2 cut(s)	165, 681
BstV2I	GAAGAC	1 cut(s)	460
BstZI	CGGCCG	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	522
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	7 cut(s)	125, 158, 200, 378, 464, 731, 770
BtgI	CCRYGG	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	279, 489, 614
Cac8I	GCNNGC	5 cut(s)	56, 84, 326, 372, 376
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	43, 238
CseI	GACGC	3 cut(s)	55, 194, 450
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	8 cut(s)	166, 182, 250, 426, 472, 480, 593, 654
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	120, 522
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	2 cut(s)	134, 796
DpnII	GATC	2 cut(s)	132, 794
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	4 cut(s)	198, 462, 729, 768
EagI	CGGCCG	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	230, 248
EarI	CTCTTC	2 cut(s)	230, 248
EclXI	CGGCCG	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	618
Eco147I	AGGCCT	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	43, 238
Eco52I	CGGCCG	1 cut(s)	462
Eco72I	CACGTG	1 cut(s)	196
Eco81I	CCTNAGG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	586
EcoO109I	RGGNCCY	2 cut(s)	43, 238
EcoRII	CCWGG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	618
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	8 cut(s)	169, 185, 253, 429, 475, 483, 596, 657
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	4 cut(s)	4, 29, 453, 715
FatI	CATG	8 cut(s)	165, 181, 249, 425, 471, 479, 592, 653
FauI	CCCGC	2 cut(s)	91, 329
Fnu4HI	GCNGC	6 cut(s)	148, 151, 179, 293, 462, 695
FokI	GGATG	3 cut(s)	286, 476, 601
Fsp4HI	GCNGC	6 cut(s)	148, 151, 179, 293, 462, 695
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	6 cut(s)	148, 151, 179, 293, 462, 695
GsaI	CCCAGC	1 cut(s)	701
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	7 cut(s)	125, 158, 200, 378, 464, 731, 770
HapII	CCGG	5 cut(s)	271, 484, 600, 747, 771
HgaI	GACGC	3 cut(s)	55, 194, 450
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	3 cut(s)	9, 186, 442
Hin1II	CATG	8 cut(s)	169, 185, 253, 429, 475, 483, 596, 657
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	761
HpaII	CCGG	5 cut(s)	271, 484, 600, 747, 771
HphI	GGTGA	2 cut(s)	307, 700
Hpy166II	GTNNAC	3 cut(s)	193, 264, 477
Hpy188III	TCNNGA	4 cut(s)	166, 271, 540, 559
Hpy8I	GTNNAC	3 cut(s)	193, 264, 477
Hpy99I	CGWCG	4 cut(s)	71, 286, 289, 292
HpyAV	CCTTC	2 cut(s)	87, 172
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	170, 195
HpyCH4V	TGCA	5 cut(s)	181, 403, 614, 637, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	2 cut(s)	120, 522
HpySE526I	ACGT	2 cut(s)	170, 195
Hsp92I	GRCGYC	3 cut(s)	9, 186, 442
Hsp92II	CATG	8 cut(s)	169, 185, 253, 429, 475, 483, 596, 657
HspAI	GCGC	1 cut(s)	9
KasI	GGCGCC	1 cut(s)	8
KflI	GGGWCCC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	132, 794
LmnI	GCTCC	4 cut(s)	273, 333, 542, 743
Lsp1109I	GCAGC	2 cut(s)	165, 681
LweI	GCATC	3 cut(s)	498, 623, 655
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	2 cut(s)	170, 195
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	2 cut(s)	134, 796
MbiI	CCGCTC	2 cut(s)	324, 545
MboI	GATC	2 cut(s)	132, 794
MboII	GAAGA	9 cut(s)	105, 108, 142, 217, 235, 238, 460, 574, 642
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	721
Mox20I	TGGCCA	1 cut(s)	200
MroI	TCCGGA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	360, 381
MslI	CAYNNNNRTG	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	5 cut(s)	271, 484, 600, 747, 771
MspR9I	CCNGG	3 cut(s)	341, 485, 601
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	2 cut(s)	66, 461
MwoI	GCNNNNNNNGC	1 cut(s)	495
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	2 cut(s)	485, 601
NdeII	GATC	2 cut(s)	132, 794
NlaIII	CATG	8 cut(s)	169, 185, 253, 429, 475, 483, 596, 657
NlaIV	GGNNCC	6 cut(s)	10, 44, 45, 239, 279, 745
NmeAIII	GCCGAG	2 cut(s)	10, 474
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	2 cut(s)	483, 596
PagI	TCATGA	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 293
PctI	GAATGC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	761
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	6 cut(s)	149, 152, 180, 294, 463, 696
PluTI	GGCGCC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	2 cut(s)	43, 238
Psp5II	RGGWCCY	2 cut(s)	43, 238
Psp6I	CCWGG	1 cut(s)	339
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	6 cut(s)	10, 44, 45, 239, 279, 745
PspPI	GGNCC	2 cut(s)	43, 238
PspPPI	RGGWCCY	2 cut(s)	43, 238
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	360, 381
SatI	GCNGC	6 cut(s)	148, 151, 179, 293, 462, 695
Sau3AI	GATC	2 cut(s)	132, 794
Sau96I	GGNCC	2 cut(s)	43, 238
ScrFI	CCNGG	3 cut(s)	341, 485, 601
SduI	GDGCHC	1 cut(s)	714
SetI	ASST	6 cut(s)	173, 198, 336, 360, 368, 644
SfaNI	GCATC	3 cut(s)	498, 623, 655
SfoI	GGCGCC	1 cut(s)	10
SinI	GGWCC	2 cut(s)	43, 238
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	7 cut(s)	84, 147, 150, 293, 322, 461, 545
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	431
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	339, 483, 599
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	173, 198
TaqI	TCGA	2 cut(s)	300, 663
TaqII	GACCGA	1 cut(s)	125
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	4 cut(s)	150, 153, 295, 464
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	2 cut(s)	360, 381
Tru9I	TTAA	2 cut(s)	360, 381
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	178, 694
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	17, 154, 238, 460
Tth111I	GACNNNGTC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	43, 238
XceI	RCATGY	2 cut(s)	483, 596
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.