Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003835.1

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Reverse (-)

102682 .. 104174

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003835.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgaacggcaccgtttcggccctcacttctcggcgccacaaacgagccgccgccgccgccacaaacggccccacccctaccgccgccatgtccaagaagctcctccccgtccacggctgctgcggcaacaaggcctccttcatgacgtggacggtgcatgacgccgtccacgtcgccaagcaccactggataccctgcttcttcgcaatgggcctcctcttcttcatgggcgtcgagtacacgctccgcatggtgccctcctccgcgccgcccttcgatgtcggcttcgtcaccacgcgctccctccacctcctcctggcctcgagcccccagctcaacacattgcttgctggcctcaacacggtgtttgtgggaatgcagacaacgtatatattgtggacgtggctaatcgagggccgtccgagagccaccatcgccgccctatttatgttcacttgccggggaatccttggctactccacccaacttccattgcctcagggatttttgggatctggagcagacttcccggttgggaatgtatcgtttttcttgttctattccgggcatgtagcagggtctgtgattgcatcccttgacatgagaagaatgcagaggtgggaaatggcatggacatttgatgcattaaatgtgttgcaagctgtgagattgttagggactagaggacactacacaatagacttggcggttggggttggggccggcattctctttgattctctggcagggaagtatgaagaaagcaagagattaaattcaaaagtagcttcaactactagtaatggtgccaaagaggctttgtttccattagcagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

279

Amino Acids

30.27

Weight (kDa)

9.65

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	8, 33, 253, 806
AccII	CGCG	2 cut(s)	266, 298
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	1 cut(s)	775
AcyI	GRCGYC	3 cut(s)	34, 162, 231
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	113, 316, 361
AgsI	TTSAA	2 cut(s)	780, 792
AhlI	ACTAGT	1 cut(s)	797
AjiI	CACGTC	3 cut(s)	147, 172, 402
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	4 cut(s)	100, 334, 662, 788
AluI	AGCT	4 cut(s)	100, 334, 662, 788
AlwI	GGATC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	581
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	8 cut(s)	18, 67, 132, 211, 318, 352, 415, 720
ApeKI	GCWGC	2 cut(s)	117, 120
ApoI	RAATTY	1 cut(s)	775
AspLEI	GCGC	3 cut(s)	36, 268, 300
AspS9I	GGNCC	5 cut(s)	19, 68, 211, 415, 720
AsuC2I	CCSGG	3 cut(s)	461, 530, 565
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	258
BanI	GGYRCC	4 cut(s)	8, 33, 253, 806
BanII	GRGCYC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	104, 107
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	5 cut(s)	22, 82, 130, 149, 402
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	183
BcnI	CCSGG	3 cut(s)	461, 530, 565
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	2 cut(s)	681, 798
BfoI	RGCGCY	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	815
Bme1390I	CCNGG	4 cut(s)	317, 461, 530, 565
BmeT110I	CYCGRG	1 cut(s)	322
BmgBI	CACGTC	3 cut(s)	147, 172, 402
BmgT120I	GGNCC	5 cut(s)	19, 68, 211, 415, 720
BmiI	GGNNCC	6 cut(s)	10, 35, 70, 255, 721, 808
BmrFI	CCNGG	4 cut(s)	317, 461, 530, 565
BmsI	GCATC	2 cut(s)	599, 631
BpmI	CTGGAG	1 cut(s)	537
BpuMI	CCSGG	3 cut(s)	461, 530, 565
BsaHI	GRCGYC	3 cut(s)	34, 162, 231
BsaJI	CCNNGG	3 cut(s)	112, 460, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 316, 361
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	498
Bse3DI	GCAATG	3 cut(s)	213, 341, 491
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	112, 460, 469
BseGI	GGATG	1 cut(s)	590
BseLI	CCNNNNNNNGG	3 cut(s)	113, 316, 361
BseMI	GCAATG	3 cut(s)	213, 341, 491
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	4 cut(s)	92, 206, 250, 302
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	104, 107
BseYI	CCCAGC	1 cut(s)	330
Bsh1236I	CGCG	2 cut(s)	266, 298
BshFI	GGCC	8 cut(s)	20, 69, 134, 213, 320, 354, 417, 722
BshNI	GGYRCC	4 cut(s)	8, 33, 253, 806
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	4 cut(s)	460, 530, 564, 723
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	3 cut(s)	113, 316, 361
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	3 cut(s)	381, 615, 726
BsnI	GGCC	8 cut(s)	20, 69, 134, 213, 320, 354, 417, 722
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	258, 329
Bsp143I	GATC	1 cut(s)	512
BspANI	GGCC	8 cut(s)	20, 69, 134, 213, 320, 354, 417, 722
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	266, 298
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	6 cut(s)	10, 35, 70, 255, 721, 808
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	4 cut(s)	8, 33, 253, 806
BsrDI	GCAATG	3 cut(s)	213, 341, 491
BsrFI	RCCGGY	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	112, 460, 469
BssMI	GATC	1 cut(s)	512
BssNI	GRCGYC	3 cut(s)	34, 162, 231
BssT1I	CCWWGG	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	3 cut(s)	13, 154, 364
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	3 cut(s)	34, 162, 231
BstC8I	GCNNGC	4 cut(s)	348, 352, 660, 724
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	590
BstFNI	CGCG	2 cut(s)	266, 298
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	3 cut(s)	36, 268, 300
BstKTI	GATC	1 cut(s)	515
BstMBI	GATC	1 cut(s)	512
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 56, 123, 434, 815
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	4 cut(s)	315, 459, 528, 563
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	2 cut(s)	266, 298
BstV1I	GCAGC	2 cut(s)	104, 107
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
Bsu36I	CCTNAGG	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	8 cut(s)	20, 69, 134, 213, 320, 354, 417, 722
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	418
BtrI	CACGTC	3 cut(s)	147, 172, 402
BtsCI	GGATG	1 cut(s)	590
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	4 cut(s)	348, 352, 660, 724
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	3 cut(s)	36, 268, 300
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	5 cut(s)	19, 68, 211, 415, 720
CseI	GACGC	2 cut(s)	170, 220
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	8 cut(s)	88, 142, 158, 226, 250, 569, 601, 630
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	498
DinI	GGCGCC	1 cut(s)	35
DpnI	GATC	1 cut(s)	514
DpnII	GATC	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	469
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	329
EgeI	GGCGCC	1 cut(s)	35
EheI	GGCGCC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	8 cut(s)	91, 145, 161, 229, 253, 572, 604, 633
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	8 cut(s)	87, 141, 157, 225, 249, 568, 600, 629
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	1 cut(s)	329
FspBI	CTAG	2 cut(s)	681, 798
GlaI	GCGC	3 cut(s)	35, 267, 299
GsaI	CCCAGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	8 cut(s)	20, 69, 134, 213, 320, 354, 417, 722
HapII	CCGG	4 cut(s)	460, 530, 564, 723
HgaI	GACGC	2 cut(s)	170, 220
HhaI	GCGC	3 cut(s)	36, 268, 300
Hin1I	GRCGYC	3 cut(s)	34, 162, 231
Hin1II	CATG	8 cut(s)	91, 145, 161, 229, 253, 572, 604, 633
Hin6I	GCGC	3 cut(s)	34, 266, 298
HinP1I	GCGC	3 cut(s)	34, 266, 298
HinfI	GANTC	2 cut(s)	465, 737
HpaII	CCGG	4 cut(s)	460, 530, 564, 723
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	6 cut(s)	112, 150, 169, 240, 399, 453
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	2 cut(s)	142, 516
Hpy8I	GTNNAC	6 cut(s)	112, 150, 169, 240, 399, 453
Hpy99I	CGWCG	2 cut(s)	176, 236
HpyAV	CCTTC	2 cut(s)	148, 283
HpyCH4III	ACNGT	3 cut(s)	13, 154, 364
HpyCH4IV	ACGT	4 cut(s)	146, 171, 386, 401
HpyCH4V	TGCA	6 cut(s)	157, 379, 590, 613, 644, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 56, 123, 434, 815
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	4 cut(s)	146, 171, 386, 401
Hsp92I	GRCGYC	3 cut(s)	34, 162, 231
Hsp92II	CATG	8 cut(s)	91, 145, 161, 229, 253, 572, 604, 633
HspAI	GCGC	3 cut(s)	34, 266, 298
KasI	GGCGCC	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	722
KroNI	GCCGGC	1 cut(s)	724
Kzo9I	GATC	1 cut(s)	512
LmnI	GCTCC	4 cut(s)	105, 249, 305, 518
Lsp1109I	GCAGC	2 cut(s)	104, 107
LweI	GCATC	2 cut(s)	599, 631
MaeI	CTAG	2 cut(s)	681, 798
MaeII	ACGT	4 cut(s)	146, 171, 386, 401
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	514
MboI	GATC	1 cut(s)	512
MboII	GAAGA	5 cut(s)	193, 211, 214, 618, 770
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	258, 329
MluCI	AATT	1 cut(s)	775
Mly113I	GGCGCC	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	646
MroNI	GCCGGC	1 cut(s)	722
MseI	TTAA	2 cut(s)	647, 773
MspI	CCGG	4 cut(s)	460, 530, 564, 723
MspR9I	CCNGG	4 cut(s)	317, 461, 530, 565
Mva1269I	GAATGC	3 cut(s)	381, 615, 726
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	2 cut(s)	266, 298
MwoI	GCNNNNNNNGC	5 cut(s)	53, 56, 123, 434, 815
NaeI	GCCGGC	1 cut(s)	724
NarI	GGCGCC	1 cut(s)	34
NciI	CCSGG	3 cut(s)	461, 530, 565
NdeII	GATC	1 cut(s)	512
NgoMIV	GCCGGC	1 cut(s)	722
NlaIII	CATG	8 cut(s)	91, 145, 161, 229, 253, 572, 604, 633
NlaIV	GGNNCC	6 cut(s)	10, 35, 70, 255, 721, 808
NmeAIII	GCCGAG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	1 cut(s)	572
PaeR7I	CTCGAG	1 cut(s)	322
PagI	TCATGA	1 cut(s)	141
PceI	AGGCCT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	3 cut(s)	381, 615, 726
PdiI	GCCGGC	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	465, 737
PflFI	GACNNNGTC	1 cut(s)	164
PluTI	GGCGCC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	6 cut(s)	10, 35, 70, 255, 721, 808
PspPI	GGNCC	5 cut(s)	19, 68, 211, 415, 720
PspXI	VCTCGAGB	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	647, 773
Sau3AI	GATC	1 cut(s)	512
Sau96I	GGNCC	5 cut(s)	19, 68, 211, 415, 720
ScrFI	CCNGG	4 cut(s)	317, 461, 530, 565
SduI	GDGCHC	2 cut(s)	258, 329
SfaNI	GCATC	2 cut(s)	599, 631
SfoI	GGCGCC	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	322
SlaI	CTCGAG	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	1 cut(s)	775
SseBI	AGGCCT	1 cut(s)	134
SspDI	GGCGCC	1 cut(s)	33
SspMI	CTAG	2 cut(s)	681, 798
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	315, 459, 528, 563
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	3 cut(s)	13, 154, 364
TaiI	ACGT	4 cut(s)	149, 174, 389, 404
TaqI	TCGA	4 cut(s)	234, 276, 323, 411
TasI	AATT	1 cut(s)	775
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	8 cut(s)	50, 53, 56, 59, 86, 126, 271, 440
TfiI	GAWTC	2 cut(s)	465, 737
Tru1I	TTAA	2 cut(s)	647, 773
Tru9I	TTAA	2 cut(s)	647, 773
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	117, 120
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	17, 130, 214, 771
TspRI	CASTG	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	775
XceI	RCATGY	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	322
XspI	CTAG	2 cut(s)	681, 798
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.