Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Forward (+)

48672727 .. 48674362

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG360200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCCAAGAAGCTCCTCCCCGTCCACGGCTGCGGCAACAAGGCCTCCTTCATGACGTGGACGATGCATGACGCCGTCCACGTCGCCAAGCACCACTGGATACCCTGCTTCTTCGCAATGGGCCTCCTCTTCTTCATGGGCGTCGAGTACACGCTCCGCATGGTGCCCTCCTCCGCGCCGCCCTTCGATGTCGGCTTCGTCACCACGCGCTCCCTCCACCTCCTCCTGGCCTCGAGCCCCCAGCTCAACACATTGCTCGCTGGCCTCAACACGGTGTTTGTGGGAATGCAGACAACGTATATATTGTGGACGTGGCTAATCGAGGGCCGTCCGAGAGCCACCATCGCCGCCCTATTTATGTTCACTTGCCGGGGAATCCTTGGCTACTCCACCCAACTTCCATTGCCTCAGGGATTTTTGGGGTCGGGAGCAGACTTTCCGGTTGGGAATGTATCGTTTTTCTTGTTCTACTCCGGGCATGTAGCAGGGTCTGTGATTGCATCCCTCGACATGAGAAGAATGCAGAGGTGGGAATTGGCATGGACATTTGATGCATTAAATGTGTTGCAAGCTGTGAGATTGTTAGGGACTAGAGGACACTACACAATAGACTTGGCGGTTGGGGTTGGGGCCGGTATTCTCTTTGATTCTCTGGCAGGGAAGTATGAAGAAAGCAAGAGACTAAATTCAAAAGTAGCTTCAACTACTAGTAATGGTGCCAAAGAGGCTTTGTTTCCATTAGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

249

Amino Acids

27.31

Weight (kDa)

9.24

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtPDCT1_2	PF24788	62 - 221	5.9e-92	AtPDCT1/2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	163, 716
AccII	CGCG	2 cut(s)	176, 208
AciI	CCGC	6 cut(s)	33, 157, 174, 179, 348, 617
AcsI	RAATTY	1 cut(s)	685
AcyI	GRCGYC	2 cut(s)	72, 141
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	26, 226, 271
AgsI	TTSAA	2 cut(s)	690, 702
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	3 cut(s)	57, 82, 312
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	4 cut(s)	13, 244, 572, 698
AluI	AGCT	4 cut(s)	13, 244, 572, 698
Alw26I	GTCTC	1 cut(s)	673
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	6 cut(s)	42, 121, 228, 262, 325, 630
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	685
AspLEI	GCGC	2 cut(s)	178, 210
AspS9I	GGNCC	3 cut(s)	121, 325, 630
AsuC2I	CCSGG	2 cut(s)	371, 475
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	168
BanI	GGYRCC	2 cut(s)	163, 716
BanII	GRGCYC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	3 cut(s)	43, 59, 312
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	93
BcnI	CCSGG	2 cut(s)	371, 475
BcoDI	GTCTC	1 cut(s)	673
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	2 cut(s)	591, 708
BfuI	GTATCC	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	725
BisI	GCNGC	4 cut(s)	31, 34, 179, 348
BlsI	GCNGC	4 cut(s)	32, 35, 180, 349
Bme1390I	CCNGG	3 cut(s)	227, 371, 475
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	3 cut(s)	57, 82, 312
BmgT120I	GGNCC	3 cut(s)	121, 325, 630
BmiI	GGNNCC	3 cut(s)	165, 631, 718
BmrFI	CCNGG	3 cut(s)	227, 371, 475
BmsI	GCATC	3 cut(s)	54, 509, 541
BpuMI	CCSGG	2 cut(s)	371, 475
BsaHI	GRCGYC	2 cut(s)	72, 141
BsaJI	CCNNGG	3 cut(s)	25, 370, 379
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 226, 271
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	3 cut(s)	123, 251, 401
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	25, 370, 379
BseGI	GGATG	1 cut(s)	500
BseLI	CCNNNNNNNGG	3 cut(s)	26, 226, 271
BseMI	GCAATG	3 cut(s)	123, 251, 401
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	4 cut(s)	5, 116, 160, 212
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	176, 208
BshFI	GGCC	6 cut(s)	44, 123, 230, 264, 327, 632
BshNI	GGYRCC	2 cut(s)	163, 716
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	4 cut(s)	370, 440, 474, 633
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	3 cut(s)	26, 226, 271
BsmAI	GTCTC	1 cut(s)	673
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	2 cut(s)	291, 525
BsnI	GGCC	6 cut(s)	44, 123, 230, 264, 327, 632
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	168, 239
BspACI	CCGC	6 cut(s)	33, 157, 174, 179, 348, 617
BspANI	GGCC	6 cut(s)	44, 123, 230, 264, 327, 632
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	176, 208
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	165, 631, 718
BspT107I	GGYRCC	2 cut(s)	163, 716
BsrDI	GCAATG	3 cut(s)	123, 251, 401
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	25, 370, 379
BssNI	GRCGYC	2 cut(s)	72, 141
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	72, 141
BstC8I	GCNNGC	3 cut(s)	258, 262, 570
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	500
BstFNI	CGCG	2 cut(s)	176, 208
BstHHI	GCGC	2 cut(s)	178, 210
BstMAI	GTCTC	1 cut(s)	673
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 725
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	225, 369, 473
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	2 cut(s)	176, 208
BstV1I	GCAGC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	6 cut(s)	44, 123, 230, 264, 327, 632
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	328
BtrI	CACGTC	3 cut(s)	57, 82, 312
BtsCI	GGATG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	258, 262, 570
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	2 cut(s)	178, 210
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	3 cut(s)	121, 325, 630
CseI	GACGC	2 cut(s)	80, 130
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	7 cut(s)	52, 68, 136, 160, 479, 511, 540
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	2 cut(s)	69, 556
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	7 cut(s)	55, 71, 139, 163, 482, 514, 543
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	7 cut(s)	51, 67, 135, 159, 478, 510, 539
Fnu4HI	GCNGC	4 cut(s)	31, 34, 179, 348
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	31, 34, 179, 348
FspBI	CTAG	2 cut(s)	591, 708
GlaI	GCGC	2 cut(s)	177, 209
GluI	GCNGC	4 cut(s)	31, 34, 179, 348
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	6 cut(s)	44, 123, 230, 264, 327, 632
HapII	CCGG	4 cut(s)	370, 440, 474, 633
HgaI	GACGC	2 cut(s)	80, 130
HhaI	GCGC	2 cut(s)	178, 210
Hin1I	GRCGYC	2 cut(s)	72, 141
Hin1II	CATG	7 cut(s)	55, 71, 139, 163, 482, 514, 543
Hin6I	GCGC	2 cut(s)	176, 208
HinP1I	GCGC	2 cut(s)	176, 208
HinfI	GANTC	2 cut(s)	375, 647
HpaII	CCGG	4 cut(s)	370, 440, 474, 633
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	6 cut(s)	25, 60, 79, 150, 309, 363
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	2 cut(s)	52, 426
Hpy8I	GTNNAC	6 cut(s)	25, 60, 79, 150, 309, 363
Hpy99I	CGWCG	2 cut(s)	86, 146
HpyAV	CCTTC	2 cut(s)	58, 193
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	4 cut(s)	56, 81, 296, 311
HpyCH4V	TGCA	6 cut(s)	67, 289, 500, 523, 554, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 725
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	4 cut(s)	56, 81, 296, 311
Hsp92I	GRCGYC	2 cut(s)	72, 141
Hsp92II	CATG	7 cut(s)	55, 71, 139, 163, 482, 514, 543
HspAI	GCGC	2 cut(s)	176, 208
LmnI	GCTCC	4 cut(s)	18, 159, 215, 428
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	54, 509, 541
MaeI	CTAG	2 cut(s)	591, 708
MaeII	ACGT	4 cut(s)	56, 81, 296, 311
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	5 cut(s)	103, 121, 124, 528, 680
MhlI	GDGCHC	2 cut(s)	168, 239
MluCI	AATT	2 cut(s)	533, 685
Mph1103I	ATGCAT	2 cut(s)	69, 556
MseI	TTAA	1 cut(s)	557
MspI	CCGG	4 cut(s)	370, 440, 474, 633
MspR9I	CCNGG	3 cut(s)	227, 371, 475
Mva1269I	GAATGC	2 cut(s)	291, 525
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	2 cut(s)	176, 208
MwoI	GCNNNNNNNGC	2 cut(s)	344, 725
NciI	CCSGG	2 cut(s)	371, 475
NlaIII	CATG	7 cut(s)	55, 71, 139, 163, 482, 514, 543
NlaIV	GGNNCC	3 cut(s)	165, 631, 718
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	2 cut(s)	69, 556
NspI	RCATGY	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	232
PagI	TCATGA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	2 cut(s)	291, 525
PfeI	GAWTC	2 cut(s)	375, 647
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	32, 35, 180, 349
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	165, 631, 718
PspPI	GGNCC	3 cut(s)	121, 325, 630
PspXI	VCTCGAGB	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	4 cut(s)	31, 34, 179, 348
Sau96I	GGNCC	3 cut(s)	121, 325, 630
ScrFI	CCNGG	3 cut(s)	227, 371, 475
SduI	GDGCHC	2 cut(s)	168, 239
SfaNI	GCATC	3 cut(s)	54, 509, 541
Sfr274I	CTCGAG	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	2 cut(s)	533, 685
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	6 cut(s)	33, 157, 174, 179, 348, 617
SspMI	CTAG	2 cut(s)	591, 708
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	225, 369, 473
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	4 cut(s)	59, 84, 299, 314
TaqI	TCGA	5 cut(s)	144, 186, 233, 321, 507
TasI	AATT	2 cut(s)	533, 685
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	3 cut(s)	36, 181, 350
TfiI	GAWTC	2 cut(s)	375, 647
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	40, 124, 681
TspRI	CASTG	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	232
XspI	CTAG	2 cut(s)	591, 708
Zsp2I	ATGCAT	2 cut(s)	69, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.