Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Reverse (-)

39731848 .. 39732259

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0324400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGAGGATTTGGGGGCCTTATGACTCGGGGAAGAAGCAGGTGGCAAAGGCGATGATGGCGGAGATGGTGAGAGTTTTGGTGGATGAGAATAGGCTTAAGAGTGTTCTTGCGGAGATTGTTGGGGCCGCAAGTGTGTACTGGGCAGCTTTGTTTCTTAAAGACCCCAGGCCTAATTTCTTGTTCGGTTCAGATACCCAGAATTGCTTGCTCAATTTGATCAGTGCAAGACTCCTCTCAATAAAAGCCGCTTGGCAATTTGATTCAGGGGAATTGATGAGTTTGTTCATAATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

8.89

Isoelectric Point (pI)

15.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	31
AciI	CCGC	4 cut(s)	62, 113, 129, 249
AfaI	GTAC	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	3 cut(s)	17, 126, 170
ApeKI	GCWGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	17, 126
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	52, 61
BciT130I	CCWGG	1 cut(s)	169
BclI	TGATCA	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	129, 147, 249
BlsI	GCNGC	3 cut(s)	130, 148, 250
Bme1390I	CCNGG	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	17, 126
BmiI	GGNNCC	2 cut(s)	18, 127
BmrFI	CCNGG	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	3 cut(s)	19, 128, 172
BsiHKCI	CYCGRG	1 cut(s)	28
BsnI	GGCC	3 cut(s)	19, 128, 172
BsoBI	CYCGRG	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	4 cut(s)	62, 113, 129, 249
BspANI	GGCC	3 cut(s)	19, 128, 172
BspLI	GGNNCC	2 cut(s)	18, 127
BspMI	ACCTGC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	169
BstAFI	CTTAAG	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	19, 128, 172
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	17, 126
Csp6I	GTAC	1 cut(s)	139
CviJI	RGCY	6 cut(s)	19, 97, 128, 149, 172, 248
CviKI_1	RGCY	6 cut(s)	19, 97, 128, 149, 172, 248
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	167
FaiI	YATR	2 cut(s)	24, 290
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	129, 147, 249
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	129, 147, 249
GluI	GCNGC	3 cut(s)	129, 147, 249
HaeIII	GGCC	3 cut(s)	19, 128, 172
HinfI	GANTC	3 cut(s)	26, 231, 263
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	219
LpnPI	CCDG	6 cut(s)	26, 127, 154, 181, 212, 252
Lsp1109I	GCAGC	1 cut(s)	158
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	1 cut(s)	46
MluCI	AATT	5 cut(s)	175, 202, 214, 257, 272
MlyI	GAGTC	2 cut(s)	20, 225
MnlI	CCTC	1 cut(s)	245
MseI	TTAA	2 cut(s)	99, 159
MspCI	CTTAAG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	18, 127
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	130, 148, 250
PleI	GAGTC	2 cut(s)	20, 225
PpsI	GAGTC	2 cut(s)	20, 225
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	18, 127
PspPI	GGNCC	2 cut(s)	17, 126
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	99, 159
SatI	GCNGC	3 cut(s)	129, 147, 249
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	2 cut(s)	17, 126
SchI	GAGTC	2 cut(s)	20, 225
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	2 cut(s)	45, 151
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	5 cut(s)	175, 202, 214, 257, 272
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	4 cut(s)	62, 113, 129, 249
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	167
TasI	AATT	5 cut(s)	175, 202, 214, 257, 272
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	2 cut(s)	131, 251
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	99, 159
Tru9I	TTAA	2 cut(s)	99, 159
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.