Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Forward (+)

50114891 .. 50116842

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAACGGCACCGTTTCGGCCCTCACTTCTCGGCGCCACAAACGAGCCGCCGCCGCCGCCGCCGCCACAAACGGCCCCACCCCTACCGCCGCCATGTCCAAGAAGCTCCTCCCCGTCCACGGCTGCGGCAACAAGGCTTCCTTCATGACGTGGACGGTGCATGACGCCGTCCACGTCGCCAAGCACCACTGGATACCCTGCTTCTTCGCAATGGGCCTCCTCTTCTTCATGGGCGTCGAGTACACGCTCCGCATGGTGCCCTCCTCCGCGCCGCCCTTCGATGTCGGCTTCGTCACCACGCGCTCCCTCCACCTCCTCCTGGCCTCGAGCCCCCAGCTCAACACATTGCTCGCTGGCCTTAACACGGTGTTTGTGGGAATGCAGACAATGTATATATTGTGGACGTGGCTAATCGAGGGCCGTCCGAGAGCCACCATCGCCGCCCTATTTATGTTCACTTGCCGGGGAATCCTTGGCTATTCCACCCAACTTCCATTGCCTCAGGGATTTTTGGGGTCGGGAGCAGACTTTCCGGTTGGGAATGTATCGTTTTTCTTGTTCTACTCCGGGCATGTAGCAGGGTCTGTAATTGCATCCCTCGACATGAGAAGAATGCAGAGGTGGGAATTGGCATGGACATTTGATGCATTAAATGTGTTGCAAGCTGTGAGATTGTTAGGGACTAGAGGACACTACACAATAGACTTGGCGGTTGGGGTTGGGGCCGGTATTCTCTTTGATTCTCTGGCAGGGAAGTATGAAGAAAGCAAGAGATTAAATTCAAAAGTAGCTTCAACTACTAGTAATGGTACCAAAGAGGCTTTGTTTCCATTAGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

280

Amino Acids

30.35

Weight (kDa)

9.75

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtPDCT1_2	PF24788	93 - 252	1.6e-91	AtPDCT1/2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	809
AccB1I	GGYRCC	4 cut(s)	8, 33, 256, 809
AccII	CGCG	2 cut(s)	269, 301
AcsI	RAATTY	1 cut(s)	778
AcyI	GRCGYC	3 cut(s)	34, 165, 234
AfaI	GTAC	2 cut(s)	242, 811
AfiI	CCNNNNNNNGG	3 cut(s)	119, 319, 364
AgsI	TTSAA	2 cut(s)	783, 795
AhlI	ACTAGT	1 cut(s)	800
AjiI	CACGTC	3 cut(s)	150, 175, 405
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	4 cut(s)	106, 337, 665, 791
AluI	AGCT	4 cut(s)	106, 337, 665, 791
AlwNI	CAGNNNCTG	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	7 cut(s)	18, 73, 214, 321, 355, 418, 723
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	778
Asp718I	GGTACC	1 cut(s)	809
AspLEI	GCGC	3 cut(s)	36, 271, 303
AspS9I	GGNCC	5 cut(s)	19, 74, 214, 418, 723
AsuC2I	CCSGG	2 cut(s)	464, 568
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	4 cut(s)	8, 33, 256, 809
BanII	GRGCYC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	5 cut(s)	22, 88, 136, 152, 405
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	464, 568
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	2 cut(s)	684, 801
BfoI	RGCGCY	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	186
Bme1390I	CCNGG	3 cut(s)	320, 464, 568
BmeT110I	CYCGRG	1 cut(s)	325
BmgBI	CACGTC	3 cut(s)	150, 175, 405
BmgT120I	GGNCC	5 cut(s)	19, 74, 214, 418, 723
BmiI	GGNNCC	6 cut(s)	10, 35, 76, 258, 724, 811
BmrFI	CCNGG	3 cut(s)	320, 464, 568
BmsI	GCATC	2 cut(s)	602, 634
BpuMI	CCSGG	2 cut(s)	464, 568
BsaHI	GRCGYC	3 cut(s)	34, 165, 234
BsaJI	CCNNGG	3 cut(s)	118, 463, 472
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 319, 364
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	3 cut(s)	216, 344, 494
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	118, 463, 472
BseGI	GGATG	1 cut(s)	593
BseLI	CCNNNNNNNGG	3 cut(s)	119, 319, 364
BseMI	GCAATG	3 cut(s)	216, 344, 494
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	4 cut(s)	98, 209, 253, 305
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	333
Bsh1236I	CGCG	2 cut(s)	269, 301
BshFI	GGCC	7 cut(s)	20, 75, 216, 323, 357, 420, 725
BshNI	GGYRCC	4 cut(s)	8, 33, 256, 809
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	4 cut(s)	463, 533, 567, 726
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	3 cut(s)	119, 319, 364
BsmFI	GGGAC	1 cut(s)	694
BsmI	GAATGC	2 cut(s)	384, 618
BsnI	GGCC	7 cut(s)	20, 75, 216, 323, 357, 420, 725
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	261, 332
BspANI	GGCC	7 cut(s)	20, 75, 216, 323, 357, 420, 725
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	2 cut(s)	269, 301
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	6 cut(s)	10, 35, 76, 258, 724, 811
BspT107I	GGYRCC	4 cut(s)	8, 33, 256, 809
BsrDI	GCAATG	3 cut(s)	216, 344, 494
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	3 cut(s)	118, 463, 472
BssNI	GRCGYC	3 cut(s)	34, 165, 234
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	3 cut(s)	13, 157, 367
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	3 cut(s)	34, 165, 234
BstC8I	GCNNGC	3 cut(s)	351, 355, 663
BstDEI	CTNAG	1 cut(s)	501
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	593
BstFNI	CGCG	2 cut(s)	269, 301
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	3 cut(s)	36, 271, 303
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 56, 59, 62, 437
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	575
BstSCI	CCNGG	3 cut(s)	318, 462, 566
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	2 cut(s)	269, 301
BstV1I	GCAGC	1 cut(s)	110
Bsu36I	CCTNAGG	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	7 cut(s)	20, 75, 216, 323, 357, 420, 725
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	421
BtrI	CACGTC	3 cut(s)	150, 175, 405
BtsCI	GGATG	1 cut(s)	593
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	351, 355, 663
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	3 cut(s)	36, 271, 303
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	5 cut(s)	19, 74, 214, 418, 723
CseI	GACGC	2 cut(s)	173, 223
Csp6I	GTAC	2 cut(s)	241, 810
CviAII	CATG	8 cut(s)	94, 145, 161, 229, 253, 572, 604, 633
CviQI	GTAC	2 cut(s)	241, 810
DdeI	CTNAG	1 cut(s)	501
DinI	GGCGCC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	35
EheI	GGCGCC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	8 cut(s)	97, 148, 164, 232, 256, 575, 607, 636
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	8 cut(s)	93, 144, 160, 228, 252, 571, 603, 632
FokI	GGATG	1 cut(s)	580
FriOI	GRGCYC	1 cut(s)	332
FspBI	CTAG	2 cut(s)	684, 801
GlaI	GCGC	3 cut(s)	35, 270, 302
GsaI	CCCAGC	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	7 cut(s)	20, 75, 216, 323, 357, 420, 725
HapII	CCGG	4 cut(s)	463, 533, 567, 726
HgaI	GACGC	2 cut(s)	173, 223
HhaI	GCGC	3 cut(s)	36, 271, 303
Hin1I	GRCGYC	3 cut(s)	34, 165, 234
Hin1II	CATG	8 cut(s)	97, 148, 164, 232, 256, 575, 607, 636
Hin6I	GCGC	3 cut(s)	34, 269, 301
HinP1I	GCGC	3 cut(s)	34, 269, 301
HinfI	GANTC	2 cut(s)	468, 740
HpaII	CCGG	4 cut(s)	463, 533, 567, 726
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	6 cut(s)	118, 153, 172, 243, 402, 456
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	2 cut(s)	145, 519
Hpy8I	GTNNAC	6 cut(s)	118, 153, 172, 243, 402, 456
Hpy99I	CGWCG	2 cut(s)	179, 239
HpyAV	CCTTC	2 cut(s)	151, 286
HpyCH4III	ACNGT	3 cut(s)	13, 157, 367
HpyCH4IV	ACGT	3 cut(s)	149, 174, 404
HpyCH4V	TGCA	6 cut(s)	160, 382, 593, 616, 647, 661
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 56, 59, 62, 437
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	3 cut(s)	149, 174, 404
Hsp92I	GRCGYC	3 cut(s)	34, 165, 234
Hsp92II	CATG	8 cut(s)	97, 148, 164, 232, 256, 575, 607, 636
HspAI	GCGC	3 cut(s)	34, 269, 301
KasI	GGCGCC	1 cut(s)	33
KpnI	GGTACC	1 cut(s)	813
LmnI	GCTCC	4 cut(s)	111, 252, 308, 521
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	602, 634
MaeI	CTAG	2 cut(s)	684, 801
MaeII	ACGT	3 cut(s)	149, 174, 404
MaeIII	GTNAC	1 cut(s)	292
MboII	GAAGA	5 cut(s)	196, 214, 217, 621, 773
MhlI	GDGCHC	2 cut(s)	261, 332
MluCI	AATT	3 cut(s)	588, 626, 778
Mly113I	GGCGCC	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	3 cut(s)	360, 650, 776
MspI	CCGG	4 cut(s)	463, 533, 567, 726
MspR9I	CCNGG	3 cut(s)	320, 464, 568
Mva1269I	GAATGC	2 cut(s)	384, 618
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	2 cut(s)	269, 301
MwoI	GCNNNNNNNGC	5 cut(s)	53, 56, 59, 62, 437
NarI	GGCGCC	1 cut(s)	34
NciI	CCSGG	2 cut(s)	464, 568
NlaIII	CATG	8 cut(s)	97, 148, 164, 232, 256, 575, 607, 636
NlaIV	GGNNCC	6 cut(s)	10, 35, 76, 258, 724, 811
NmeAIII	GCCGAG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	575
PaeR7I	CTCGAG	1 cut(s)	325
PagI	TCATGA	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	2 cut(s)	384, 618
PfeI	GAWTC	2 cut(s)	468, 740
PflFI	GACNNNGTC	1 cut(s)	167
PluTI	GGCGCC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	6 cut(s)	10, 35, 76, 258, 724, 811
PspPI	GGNCC	5 cut(s)	19, 74, 214, 418, 723
PspXI	VCTCGAGB	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	584
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	2 cut(s)	242, 811
RsaNI	GTAC	2 cut(s)	241, 810
SaqAI	TTAA	3 cut(s)	360, 650, 776
Sau96I	GGNCC	5 cut(s)	19, 74, 214, 418, 723
ScrFI	CCNGG	3 cut(s)	320, 464, 568
SduI	GDGCHC	2 cut(s)	261, 332
SetI	ASST	9 cut(s)	108, 152, 177, 315, 339, 407, 623, 667, 793
SfaNI	GCATC	2 cut(s)	602, 634
SfoI	GGCGCC	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SpeI	ACTAGT	1 cut(s)	800
Sse9I	AATT	3 cut(s)	588, 626, 778
SspDI	GGCGCC	1 cut(s)	33
SspMI	CTAG	2 cut(s)	684, 801
StyD4I	CCNGG	3 cut(s)	318, 462, 566
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	13, 157, 367
TaiI	ACGT	3 cut(s)	152, 177, 407
TaqI	TCGA	5 cut(s)	237, 279, 326, 414, 600
TasI	AATT	3 cut(s)	588, 626, 778
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	468, 740
Tru1I	TTAA	3 cut(s)	360, 650, 776
Tru9I	TTAA	3 cut(s)	360, 650, 776
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	17, 133, 217, 774
TspRI	CASTG	1 cut(s)	194
Tth111I	GACNNNGTC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	778
XceI	RCATGY	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	325
XspI	CTAG	2 cut(s)	684, 801
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.