Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Forward (+)

57812481 .. 57813888

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG397400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCCAAGAAGCTCCTCCCCGTCCACGGCAACAAGGCCTCCTTCATGACGTGGACGGTGCATGACGCCGTCCACGTCGCCAAGCACCACTGGATACCCTGCTTCTTCGCAATGGGCCTCCTCTTCTTCATGGGCGTCGAGTACACGCTCCGCATGGTGCCCTCCTCCGCGCCGCCCTTCGATGTCGGCTTCGTCACCACGCGCTCCCTCCACCTCCTCCTGGCCTCGAGCCCCCAGCTCAACACATTGCTCGCTGGCCTCAACACGGTGTTTGTGGGAATGCAGACAACGTATATATTGTGGACGTGGCTAATCGAGGGCCGTCCAAGAGCCACCATCGCCGCCCTATTTATGTTCACTTGCCGGGGAATCCTTGGTTACTCCACCCAACTTCCGTTGCCTCAGGGATTTTTGGGGTCGGGAGCAGACTTCCCGGTTGGGAATGTATCATTTTTCTTGTTCTACTCCGGGCATGTAGCAGGGTCTGTGATTGCATCCCTCGACATGAGAAGAATGCAGAGGTGGGAATTGGCATGGACATTTGATGCATTAAATGTGTTGCAAGCTGTGAGATTGTTAGGGACTAGAGGACACTACACAATAGACTTGGCGGTTGGGGTTGGGGCCGGTATTCTCTTTGATTCTCTGGCAGGGAAGTATGAAGAAAGCAAGAGACTAAATTCAAAAGTAGCTTCAACTACCAGTAATGGTGCCAAAGAGGCTTTGTTTCCATTAGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

247

Amino Acids

27.12

Weight (kDa)

9.36

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtPDCT1_2	PF24788	60 - 219	5.8e-92	AtPDCT1/2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	157, 710
AccII	CGCG	2 cut(s)	170, 202
AciI	CCGC	5 cut(s)	151, 168, 173, 342, 611
AcsI	RAATTY	1 cut(s)	679
AcyI	GRCGYC	2 cut(s)	66, 135
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	3 cut(s)	26, 220, 265
AgsI	TTSAA	2 cut(s)	684, 696
AjiI	CACGTC	3 cut(s)	51, 76, 306
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	13, 238, 566, 692
AluI	AGCT	4 cut(s)	13, 238, 566, 692
Alw26I	GTCTC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	6 cut(s)	36, 115, 222, 256, 319, 624
ApoI	RAATTY	1 cut(s)	679
AspLEI	GCGC	2 cut(s)	172, 204
AspS9I	GGNCC	3 cut(s)	115, 319, 624
AsuC2I	CCSGG	3 cut(s)	365, 434, 469
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	402
BaeGI	GKGCMC	1 cut(s)	162
BanI	GGYRCC	2 cut(s)	157, 710
BanII	GRGCYC	1 cut(s)	233
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	3 cut(s)	43, 53, 306
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	87
BcnI	CCSGG	3 cut(s)	365, 434, 469
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	719
BisI	GCNGC	2 cut(s)	173, 342
BlsI	GCNGC	2 cut(s)	174, 343
Bme1390I	CCNGG	4 cut(s)	221, 365, 434, 469
BmeT110I	CYCGRG	1 cut(s)	226
BmgBI	CACGTC	3 cut(s)	51, 76, 306
BmgT120I	GGNCC	3 cut(s)	115, 319, 624
BmiI	GGNNCC	3 cut(s)	159, 625, 712
BmrFI	CCNGG	4 cut(s)	221, 365, 434, 469
BmsI	GCATC	2 cut(s)	503, 535
BpuMI	CCSGG	3 cut(s)	365, 434, 469
BsaHI	GRCGYC	2 cut(s)	66, 135
BsaJI	CCNNGG	3 cut(s)	25, 364, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 220, 265
Bse118I	RCCGGY	1 cut(s)	626
Bse1I	ACTGG	2 cut(s)	95, 702
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	2 cut(s)	117, 245
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	25, 364, 373
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	3 cut(s)	26, 220, 265
BseMI	GCAATG	2 cut(s)	117, 245
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	95, 702
BseRI	GAGGAG	4 cut(s)	5, 110, 154, 206
BseSI	GKGCMC	1 cut(s)	162
BseYI	CCCAGC	1 cut(s)	234
Bsh1236I	CGCG	2 cut(s)	170, 202
BshFI	GGCC	6 cut(s)	38, 117, 224, 258, 321, 626
BshNI	GGYRCC	2 cut(s)	157, 710
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	4 cut(s)	364, 434, 468, 627
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	3 cut(s)	26, 220, 265
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	2 cut(s)	285, 519
BsnI	GGCC	6 cut(s)	38, 117, 224, 258, 321, 626
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	162, 233
BspACI	CCGC	5 cut(s)	151, 168, 173, 342, 611
BspANI	GGCC	6 cut(s)	38, 117, 224, 258, 321, 626
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	2 cut(s)	170, 202
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	159, 625, 712
BspT107I	GGYRCC	2 cut(s)	157, 710
BsrDI	GCAATG	2 cut(s)	117, 245
BsrFI	RCCGGY	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	95, 702
BssAI	RCCGGY	1 cut(s)	626
BssECI	CCNNGG	3 cut(s)	25, 364, 373
BssNI	GRCGYC	2 cut(s)	66, 135
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	58, 268
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	2 cut(s)	66, 135
BstC8I	GCNNGC	3 cut(s)	252, 256, 564
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	494
BstFNI	CGCG	2 cut(s)	170, 202
BstHHI	GCGC	2 cut(s)	172, 204
BstMAI	GTCTC	1 cut(s)	667
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 719
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	219, 363, 432, 467
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	2 cut(s)	170, 202
Bsu36I	CCTNAGG	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	6 cut(s)	38, 117, 224, 258, 321, 626
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	322
BtrI	CACGTC	3 cut(s)	51, 76, 306
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	3 cut(s)	252, 256, 564
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	2 cut(s)	172, 204
Cfr10I	RCCGGY	1 cut(s)	626
Cfr13I	GGNCC	3 cut(s)	115, 319, 624
CseI	GACGC	2 cut(s)	74, 124
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	7 cut(s)	46, 62, 130, 154, 473, 505, 534
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	7 cut(s)	49, 65, 133, 157, 476, 508, 537
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	7 cut(s)	45, 61, 129, 153, 472, 504, 533
Fnu4HI	GCNGC	2 cut(s)	173, 342
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	173, 342
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	2 cut(s)	171, 203
GluI	GCNGC	2 cut(s)	173, 342
GsaI	CCCAGC	1 cut(s)	238
HaeIII	GGCC	6 cut(s)	38, 117, 224, 258, 321, 626
HapII	CCGG	4 cut(s)	364, 434, 468, 627
HgaI	GACGC	2 cut(s)	74, 124
HhaI	GCGC	2 cut(s)	172, 204
Hin1I	GRCGYC	2 cut(s)	66, 135
Hin1II	CATG	7 cut(s)	49, 65, 133, 157, 476, 508, 537
Hin6I	GCGC	2 cut(s)	170, 202
HinP1I	GCGC	2 cut(s)	170, 202
HinfI	GANTC	2 cut(s)	369, 641
HpaII	CCGG	4 cut(s)	364, 434, 468, 627
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	6 cut(s)	25, 54, 73, 144, 303, 357
Hpy188III	TCNNGA	2 cut(s)	46, 420
Hpy8I	GTNNAC	6 cut(s)	25, 54, 73, 144, 303, 357
Hpy99I	CGWCG	2 cut(s)	80, 140
HpyAV	CCTTC	2 cut(s)	52, 187
HpyCH4III	ACNGT	2 cut(s)	58, 268
HpyCH4IV	ACGT	4 cut(s)	50, 75, 290, 305
HpyCH4V	TGCA	6 cut(s)	61, 283, 494, 517, 548, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 719
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	4 cut(s)	50, 75, 290, 305
Hsp92I	GRCGYC	2 cut(s)	66, 135
Hsp92II	CATG	7 cut(s)	49, 65, 133, 157, 476, 508, 537
HspAI	GCGC	2 cut(s)	170, 202
LmnI	GCTCC	4 cut(s)	18, 153, 209, 422
LweI	GCATC	2 cut(s)	503, 535
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	4 cut(s)	50, 75, 290, 305
MaeIII	GTNAC	2 cut(s)	193, 377
MboII	GAAGA	5 cut(s)	97, 115, 118, 522, 674
MhlI	GDGCHC	2 cut(s)	162, 233
MluCI	AATT	2 cut(s)	527, 679
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	1 cut(s)	551
MspI	CCGG	4 cut(s)	364, 434, 468, 627
MspR9I	CCNGG	4 cut(s)	221, 365, 434, 469
Mva1269I	GAATGC	2 cut(s)	285, 519
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	170, 202
MwoI	GCNNNNNNNGC	2 cut(s)	338, 719
NciI	CCSGG	3 cut(s)	365, 434, 469
NlaIII	CATG	7 cut(s)	49, 65, 133, 157, 476, 508, 537
NlaIV	GGNNCC	3 cut(s)	159, 625, 712
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	226
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	2 cut(s)	285, 519
PfeI	GAWTC	2 cut(s)	369, 641
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	174, 343
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	159, 625, 712
PspPI	GGNCC	3 cut(s)	115, 319, 624
PspXI	VCTCGAGB	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	485
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	2 cut(s)	173, 342
Sau96I	GGNCC	3 cut(s)	115, 319, 624
ScrFI	CCNGG	4 cut(s)	221, 365, 434, 469
SduI	GDGCHC	2 cut(s)	162, 233
SfaNI	GCATC	2 cut(s)	503, 535
Sfr274I	CTCGAG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	527, 679
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	5 cut(s)	151, 168, 173, 342, 611
SspMI	CTAG	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	4 cut(s)	219, 363, 432, 467
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	58, 268
TaiI	ACGT	4 cut(s)	53, 78, 293, 308
TaqI	TCGA	5 cut(s)	138, 180, 227, 315, 501
TasI	AATT	2 cut(s)	527, 679
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	175, 344
TfiI	GAWTC	2 cut(s)	369, 641
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	34, 118, 675
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	95
Tth111I	GACNNNGTC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	226
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.