Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014419

Physical Location & Seq

Genomic Coordinates Reverse (-)

6484607 .. 6487138

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G087500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAACGGCGCCGTTTCAGCCCTCAAGCCTCGGCACAAAAGGGCCTCAAACGGCAAGCCCCTTCACGTCGTTCACACAAACCACAACTCGGAGGTCCACCAAGTGCAGGACCTGATCATGTCGTCTTCTTCTTCTTCTTTTTCCTCCAAGAAGCTCCGTGTCTACGGCGGCAAGGCCTCCTTCATGACCTGGAGGCTGCATGACGTCCTGCCTGTGGCCAAGCACCATTGGATACCCTGCGTCTTCGCAATGGGCCTCCTCTTCTTCATGGGCGTCGAGTACACGCTCCGAATGGTGCCCTCGTCGTCTCCGCCCTTCGATGTCGGCTTCATCACCACGCGCTCACTCCACCTCCTCTTGGCCTCCAAGCCCAAGCTTAACACCTTGCTCGCTGGTCTTAACACGGTGTTTGTGGGAATGCAGACAACGTATATTGTATGGACATGGCTAGTAGAGGGCCGCCCAAGAGCCACAATCTCAGCTCTTTTCATGTTCACTTGCCGGGGCATTCTCGGCTACTCTACCCAACTTCCATTGCCTCAGGGATTTTTGGGGTCCGGCGCAGACTTCCCGGTTGGCAATGTGTCGTTTTTTCTCTTCTTCTCAGGGCATGTAGCAGGGTCTGTGATTGCATCTTTGGACATGAGGAGAATGCAGAGGTGGGAAATGGCATGGACATTTGATGCACTGAATGTGCTACAAGCACTGAGGTTGCTGGGGACAAGGGGCCACTACACAATAGACTTGGCTGTGGGGGTTGGGGCTGGTTTTCTCTTTGATTCTCTGGCAGGCAAGTATGAAGAAAGCAAGAGATCAAAAGCACCTACAAAAACTGGTACCAAAGAGGCTTTCTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

287

Amino Acids

31.62

Weight (kDa)

10.08

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15820
fragaria_vesca	FvH4_6g29670
malus_domestica	MD17G1212200.v1.1
prunus_persica	Prupe.3G087400_v2.0.a1 Prupe.3G087500_v2.0.a1
pyrus_communis	pycom17g21710
rosa_chinensis	RchiOBHm_Chr2g0135261
rosa_laevigata	RLG00000019458
rosa_multiflora	Rmu_sc0003835.1_g000021 Rmu_ssc0000187.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109330
rosa_rugosa	Rorug02G0324400
rosa_samantha	Rh2AG370700 Rh2BG380900 Rh2CG360200 Rh2DG397400
rosa_wichuraiana	Rw2G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	3 cut(s)	8, 295, 836
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	340
AciI	CCGC	3 cut(s)	168, 311, 460
AcoI	YGGCCR	1 cut(s)	216
AcyI	GRCGYC	3 cut(s)	9, 204, 273
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	2 cut(s)	281, 838
AfiI	CCNNNNNNNGG	4 cut(s)	88, 106, 214, 358
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	1 cut(s)	833
AluBI	AGCT	3 cut(s)	154, 376, 482
AluI	AGCT	3 cut(s)	154, 376, 482
Alw26I	GTCTC	1 cut(s)	312
AlwNI	CAGNNNCTG	2 cut(s)	112, 623
AoxI	GGCC	7 cut(s)	42, 174, 216, 253, 360, 457, 727
ApeKI	GCWGC	1 cut(s)	196
Asp718I	GGTACC	1 cut(s)	836
AspLEI	GCGC	3 cut(s)	11, 342, 563
AspS9I	GGNCC	7 cut(s)	42, 94, 109, 253, 457, 555, 727
AsuC2I	CCSGG	2 cut(s)	503, 572
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	3 cut(s)	94, 109, 555
AxyI	CCTNAGG	1 cut(s)	540
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	218
BanI	GGYRCC	3 cut(s)	8, 295, 836
BbsI	GAAGAC	2 cut(s)	117, 235
BbvI	GCAGC	1 cut(s)	183
BceAI	ACGGC	3 cut(s)	22, 67, 181
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	114
BcnI	CCSGG	2 cut(s)	503, 572
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	449
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	169, 197, 460
BlsI	GCNGC	3 cut(s)	170, 198, 461
Bme1390I	CCNGG	3 cut(s)	190, 503, 572
Bme18I	GGWCC	3 cut(s)	94, 109, 555
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	7 cut(s)	42, 94, 109, 253, 457, 555, 727
BmiI	GGNNCC	5 cut(s)	10, 297, 556, 728, 838
BmrFI	CCNGG	3 cut(s)	190, 503, 572
BmsI	GCATC	2 cut(s)	641, 673
BpiI	GAAGAC	2 cut(s)	117, 235
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	503, 572
BsaHI	GRCGYC	3 cut(s)	9, 204, 273
BsaJI	CCNNGG	2 cut(s)	29, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 106, 214, 358
Bse1I	ACTGG	1 cut(s)	838
Bse21I	CCTNAGG	1 cut(s)	540
Bse3DI	GCAATG	3 cut(s)	255, 533, 586
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	29, 502
BseLI	CCNNNNNNNGG	4 cut(s)	88, 106, 214, 358
BseMI	GCAATG	3 cut(s)	255, 533, 586
BseMII	CTCAG	4 cut(s)	492, 554, 618, 698
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	3 cut(s)	248, 344, 661
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	7 cut(s)	44, 176, 218, 255, 362, 459, 729
BshNI	GGYRCC	3 cut(s)	8, 295, 836
BsiSI	CCGG	3 cut(s)	502, 558, 572
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	4 cut(s)	88, 106, 214, 358
BsmAI	GTCTC	1 cut(s)	312
BsmBI	CGTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	3 cut(s)	423, 507, 657
BsnI	GGCC	7 cut(s)	44, 176, 218, 255, 362, 459, 729
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	114, 812
BspACI	CCGC	3 cut(s)	168, 311, 460
BspANI	GGCC	7 cut(s)	44, 176, 218, 255, 362, 459, 729
BspCNI	CTCAG	4 cut(s)	491, 553, 617, 699
BspFNI	CGCG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	5 cut(s)	10, 297, 556, 728, 838
BspT107I	GGYRCC	3 cut(s)	8, 295, 836
BsrDI	GCAATG	3 cut(s)	255, 533, 586
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	2 cut(s)	29, 502
BssMI	GATC	2 cut(s)	114, 812
BssNI	GRCGYC	3 cut(s)	9, 204, 273
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	2 cut(s)	266, 602
BstACI	GRCGYC	3 cut(s)	9, 204, 273
BstC8I	GCNNGC	3 cut(s)	56, 390, 790
BstDEI	CTNAG	4 cut(s)	478, 540, 604, 707
BstFNI	CGCG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	3 cut(s)	11, 342, 563
BstKTI	GATC	2 cut(s)	117, 815
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	2 cut(s)	114, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 513
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	3 cut(s)	188, 501, 570
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	2 cut(s)	117, 235
Bsu36I	CCTNAGG	1 cut(s)	540
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	7 cut(s)	44, 176, 218, 255, 362, 459, 729
BtrI	CACGTC	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	686, 704
Cac8I	GCNNGC	3 cut(s)	56, 390, 790
CaiI	CAGNNNCTG	2 cut(s)	112, 623
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	3 cut(s)	11, 342, 563
Cfr13I	GGNCC	7 cut(s)	42, 94, 109, 253, 457, 555, 727
CseI	GACGC	2 cut(s)	229, 262
Csp6I	GTAC	2 cut(s)	280, 837
CviAII	CATG	9 cut(s)	118, 184, 200, 268, 444, 490, 611, 643, 672
CviQI	GTAC	2 cut(s)	280, 837
DdeI	CTNAG	4 cut(s)	478, 540, 604, 707
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	2 cut(s)	116, 814
DpnII	GATC	2 cut(s)	114, 812
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	266, 602
EarI	CTCTTC	2 cut(s)	266, 602
EciI	GGCGGA	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	176
Eco47I	GGWCC	3 cut(s)	94, 109, 555
Eco81I	CCTNAGG	1 cut(s)	540
EcoO109I	RGGNCCY	2 cut(s)	42, 109
EcoRII	CCWGG	1 cut(s)	188
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	9 cut(s)	121, 187, 203, 271, 447, 493, 614, 646, 675
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	9 cut(s)	117, 183, 199, 267, 443, 489, 610, 642, 671
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	169, 197, 460
Fsp4HI	GCNGC	3 cut(s)	169, 197, 460
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	3 cut(s)	10, 341, 562
GluI	GCNGC	3 cut(s)	169, 197, 460
GsaI	CCCAGC	1 cut(s)	719
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	7 cut(s)	44, 176, 218, 255, 362, 459, 729
HapII	CCGG	3 cut(s)	502, 558, 572
HgaI	GACGC	2 cut(s)	229, 262
HhaI	GCGC	3 cut(s)	11, 342, 563
Hin1I	GRCGYC	3 cut(s)	9, 204, 273
Hin1II	CATG	9 cut(s)	121, 187, 203, 271, 447, 493, 614, 646, 675
Hin6I	GCGC	3 cut(s)	9, 340, 561
HinP1I	GCGC	3 cut(s)	9, 340, 561
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	3 cut(s)	502, 558, 572
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	5 cut(s)	73, 97, 163, 282, 495
Hpy188I	TCNGA	2 cut(s)	91, 290
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	5 cut(s)	73, 97, 163, 282, 495
Hpy99I	CGWCG	3 cut(s)	71, 278, 307
HpyAV	CCTTC	3 cut(s)	71, 190, 325
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	3 cut(s)	66, 204, 428
HpyCH4V	TGCA	6 cut(s)	106, 199, 421, 632, 655, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 513
HpyF3I	CTNAG	4 cut(s)	478, 540, 604, 707
HpySE526I	ACGT	3 cut(s)	66, 204, 428
Hsp92I	GRCGYC	3 cut(s)	9, 204, 273
Hsp92II	CATG	9 cut(s)	121, 187, 203, 271, 447, 493, 614, 646, 675
HspAI	GCGC	3 cut(s)	9, 340, 561
KasI	GGCGCC	1 cut(s)	8
KpnI	GGTACC	1 cut(s)	840
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	114, 812
LmnI	GCTCC	2 cut(s)	159, 291
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	641, 673
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	3 cut(s)	66, 204, 428
MalI	GATC	2 cut(s)	116, 814
MboI	GATC	2 cut(s)	114, 812
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	218
Mly113I	GGCGCC	1 cut(s)	9
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	378, 399
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	3 cut(s)	502, 558, 572
MspR9I	CCNGG	3 cut(s)	190, 503, 572
Mva1269I	GAATGC	3 cut(s)	423, 507, 657
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	17, 513
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	2 cut(s)	503, 572
NdeII	GATC	2 cut(s)	114, 812
NlaIII	CATG	9 cut(s)	121, 187, 203, 271, 447, 493, 614, 646, 675
NlaIV	GGNNCC	5 cut(s)	10, 297, 556, 728, 838
NmeAIII	GCCGAG	2 cut(s)	10, 492
NspI	RCATGY	1 cut(s)	614
PagI	TCATGA	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	176
PctI	GAATGC	3 cut(s)	423, 507, 657
PfeI	GAWTC	1 cut(s)	779
PkrI	GCNGC	3 cut(s)	170, 198, 461
PluTI	GGCGCC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	5 cut(s)	10, 297, 556, 728, 838
PspPI	GGNCC	7 cut(s)	42, 94, 109, 253, 457, 555, 727
PspPPI	RGGWCCY	1 cut(s)	109
PstNI	CAGNNNCTG	2 cut(s)	112, 623
RsaI	GTAC	2 cut(s)	281, 838
RsaNI	GTAC	2 cut(s)	280, 837
SaqAI	TTAA	2 cut(s)	378, 399
SatI	GCNGC	3 cut(s)	169, 197, 460
Sau3AI	GATC	2 cut(s)	114, 812
Sau96I	GGNCC	7 cut(s)	42, 94, 109, 253, 457, 555, 727
ScrFI	CCNGG	3 cut(s)	190, 503, 572
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	641, 673
SfoI	GGCGCC	1 cut(s)	10
SinI	GGWCC	3 cut(s)	94, 109, 555
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	3 cut(s)	168, 311, 460
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	449
StuI	AGGCCT	1 cut(s)	176
StyD4I	CCNGG	3 cut(s)	188, 501, 570
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	3 cut(s)	69, 207, 431
TaqI	TCGA	2 cut(s)	276, 318
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	2 cut(s)	171, 462
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	2 cut(s)	378, 399
Tru9I	TTAA	2 cut(s)	378, 399
TscAI	CASTG	2 cut(s)	693, 711
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	6 cut(s)	17, 172, 256, 319, 478, 813
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	693, 711
VpaK11BI	GGWCC	3 cut(s)	94, 109, 555
XceI	RCATGY	1 cut(s)	614
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	449
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.