AT3G16990

TENA/THI-4/PQQC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009388
Physical Location & Seq
Reverse (-)
5795123 .. 5796893
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16990.1

Sequence Viewer

Length: 666 bp
ATGGAGAAGAGAGGGGTGATCGACACATGGATTGATAAGCACCGTTCGATCTATACGGCGGCTACACGTCATGCTTTTGTCGTCTCGATCCGTGACGGATCCGTTGATCTCTCGTCCTTCAGAACTTGGCTGGGGCAAGATTATCTGTTCGTGAGGAGGTTTGTGCCGTTTGTAGCGAGTGTGTTGATCAGAGCTTGCAAAGATTCCGGCGAGAGTTCCGATATGGAAGTGGTGCTTGGTGGTATAGCATCGTTGAATGATGAAATAGAATGGTTTAAAAGAGAAGGATCGAAATGGGATGTTGATTTCTCGACCGTTGTGCCTCAAAGAGCTAATCAAGAATATGGCAGGTTTTTGGAAGATCTGATGAGCAGTGAGGTGAAGTATCCGGTGATTATGACAGCTTTCTGGGCAATTGAAGCAGTGTATCAAGAGAGCTTTGCTCATTGTTTAGAAGACGGGAACAAAACTCCGGTGGAGCTTACCGGTGCTTGTCATCGTTGGGGGAATGACGGGTTTAAACAGTATTGTTCGTCTGTCAAGAACATTGCCGAACGTTGTCTGGAGAATGCCTCCGGTGAGGTGCTCGGTGAAGCTGAAGATGTACTTGTACGAGTTCTTGAACTAGAGGTTGCCTTCTGGGAGATGAGCCGTGGAGGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00730 ko01100 map00730 map01100
Pfam Domains
Protein Families
TENA_THI-4

Protein Analysis

221

Amino Acids

25.07

Weight (kDa)

4.9

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TENA_THI-4 PF03070 12 - 218 9.5e-38 TENA/THI-4/PQQC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 339
AciI CCGC 1 cut(s) 59
AclI AACGTT 1 cut(s) 556
AclWI GGATC 4 cut(s) 82, 93, 106, 295
AcuI CTGAAG 2 cut(s) 103, 618
AfaI GTAC 2 cut(s) 606, 612
AflIII ACRYGT 1 cut(s) 65
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 3 cut(s) 256, 419, 623
AjiI CACGTC 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 6 cut(s) 194, 332, 404, 438, 481, 596
AluI AGCT 6 cut(s) 194, 332, 404, 438, 481, 596
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 4 cut(s) 82, 93, 106, 295
AsiGI ACCGGT 1 cut(s) 485
AsuHPI GGTGA 5 cut(s) 28, 391, 403, 590, 602
BamHI GGATCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 588
BceAI ACGGC 3 cut(s) 72, 151, 636
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciVI GTATCC 1 cut(s) 396
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 626
BfuAI ACCTGC 1 cut(s) 339
BfuI GTATCC 1 cut(s) 396
BglII AGATCT 1 cut(s) 361
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 4 cut(s) 427, 459, 557, 589
BpmI CTGGAG 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 652
BsaWI WCCGGW 4 cut(s) 388, 472, 485, 575
Bse118I RCCGGY 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 652
BseGI GGATG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 315
BshTI ACCGGT 1 cut(s) 485
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 5 cut(s) 207, 389, 473, 486, 576
BsmAI GTCTC 1 cut(s) 88
BsmBI CGTCTC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 574
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
BspACI CCGC 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 339
BspPI GGATC 4 cut(s) 82, 93, 106, 295
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 485
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 1 cut(s) 652
BssMI GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
Bst4CI ACNGT 4 cut(s) 44, 316, 525, 663
Bst6I CTCTTC 1 cut(s) 2
BstC8I GCNNGC 1 cut(s) 196
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 8 cut(s) 21, 51, 90, 101, 109, 189, 290, 364
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 410, 419
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 2 cut(s) 98, 361
BstYI RGATCY 2 cut(s) 98, 361
BsuI GTATCC 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 652
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 2 cut(s) 379, 429
BtsIMutI CAGTG 2 cut(s) 379, 429
BveI ACCTGC 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 485
Csp6I GTAC 2 cut(s) 605, 611
CspAI ACCGGT 1 cut(s) 485
CviAII CATG 2 cut(s) 27, 71
CviJI RGCY 9 cut(s) 62, 130, 194, 332, 404, 438, 481, 596, 651
CviKI_1 RGCY 9 cut(s) 62, 130, 194, 332, 404, 438, 481, 596, 651
CviQI GTAC 2 cut(s) 605, 611
DpnI GATC 8 cut(s) 20, 50, 89, 100, 108, 188, 289, 363
DpnII GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
DraI TTTAAA 2 cut(s) 277, 520
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco57I CTGAAG 2 cut(s) 103, 618
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 2 cut(s) 30, 74
FaiI YATR 7 cut(s) 28, 54, 72, 224, 245, 345, 398
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 591, 623
FatI CATG 2 cut(s) 26, 70
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 626
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 584
HapII CCGG 5 cut(s) 207, 389, 473, 486, 576
Hin1II CATG 2 cut(s) 30, 74
HinfI GANTC 1 cut(s) 203
HpaII CCGG 5 cut(s) 207, 389, 473, 486, 576
HphI GGTGA 5 cut(s) 28, 391, 403, 590, 602
Hpy188I TCNGA 4 cut(s) 122, 191, 220, 366
Hpy188III TCNNGA 8 cut(s) 85, 151, 310, 338, 431, 541, 563, 620
HpyAV CCTTC 3 cut(s) 127, 278, 646
HpyCH4III ACNGT 4 cut(s) 44, 316, 525, 663
HpyCH4IV ACGT 2 cut(s) 67, 556
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 419
HpySE526I ACGT 2 cut(s) 67, 556
Hsp92II CATG 2 cut(s) 30, 74
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
LmnI GCTCC 1 cut(s) 478
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 626
MaeII ACGT 2 cut(s) 67, 556
MaeIII GTNAC 1 cut(s) 92
MalI GATC 8 cut(s) 20, 50, 89, 100, 108, 188, 289, 363
MboI GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
MboII GAAGA 4 cut(s) 19, 371, 467, 611
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 2 cut(s) 98, 361
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 1 cut(s) 414
MnlI CCTC 9 cut(s) 5, 147, 150, 333, 370, 574, 583, 622, 650
MseI TTAA 2 cut(s) 276, 519
MspI CCGG 5 cut(s) 207, 389, 473, 486, 576
MssI GTTTAAAC 1 cut(s) 520
MunI CAATTG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 574
MwoI GCNNNNNNNGC 2 cut(s) 410, 419
NdeII GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
NlaIII CATG 2 cut(s) 30, 74
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 92
PctI GAATGC 1 cut(s) 574
PfeI GAWTC 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 485
PkrI GCNGC 1 cut(s) 61
PmeI GTTTAAAC 1 cut(s) 520
Psp1406I AACGTT 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 100
PsuI RGATCY 2 cut(s) 98, 361
RsaI GTAC 2 cut(s) 606, 612
RsaNI GTAC 2 cut(s) 605, 611
SaqAI TTAA 2 cut(s) 276, 519
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 8 cut(s) 18, 48, 87, 98, 106, 186, 287, 361
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 1 cut(s) 257
Sse9I AATT 1 cut(s) 414
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 626
TaaI ACNGT 4 cut(s) 44, 316, 525, 663
TaiI ACGT 2 cut(s) 70, 559
TaqI TCGA 5 cut(s) 21, 47, 86, 290, 311
TasI AATT 1 cut(s) 414
TatI WGTACW 1 cut(s) 604
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 276, 519
Tru9I TTAA 2 cut(s) 276, 519
TscAI CASTG 2 cut(s) 379, 429
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 3 cut(s) 80, 91, 111
TspRI CASTG 2 cut(s) 379, 429
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.